Array 1 29559-27392 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIGC02000026.1 Litorilinea aerophila strain ATCC BAA-2444 NODE_26_length_96690_cov_45.631639, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 29558 29 100.0 32 ............................. TGGCGGGAAGCAAACAGGCGGCGCAAGAACAA 29497 29 100.0 32 ............................. ATGTCCCGCCAATTCAGTTCTGCGATGACCTG 29436 29 100.0 32 ............................. CGGGCCGAAAGGGATAGGGAGTACGTGAAGGT 29375 29 100.0 32 ............................. CCCCCAGTGCTCATAATTTCGCCGTAGGTGTC 29314 29 100.0 32 ............................. AGATACCGGTCATCAGCGGTAACGGCATCCGC 29253 29 100.0 32 ............................. ACAGGCGACGGCGGCCTCTTGTTGCCGGTATC 29192 29 96.6 32 ............................A GCGGTGTCGCCGCCGGAAACGGCGGAGGTGTC 29131 29 100.0 32 ............................. CCGGTATCGACGGTGGCTGCCATGGGCAAGGC 29070 29 100.0 32 ............................. AAGTACCCCAGGTCAGATGCTACCACCTTGTC 29009 29 100.0 33 ............................. CTGGGGGGCTGGTATGACACCGACACAGGGATC 28947 29 100.0 32 ............................. TGGCGCACAAGATTGCCCAGGCGCTGGAAGTC 28886 29 100.0 31 ............................. CGGATGCTGCCGCGGCGCCCCCGGCCGGATA 28826 29 100.0 35 ............................. AAGCCAAGGCAATAGGGAATGGGTCCATTCACTCA 28762 29 100.0 32 ............................. GTGCGTGGGAAGCTGAAGACCACGGAGAAGGC 28701 29 100.0 32 ............................. CTGTTGTGCCGCGGCCCATCCGGCGAATTGAC 28640 29 100.0 32 ............................. TTGGACCGCTACCAATTCTGGTTCGATGGCGA 28579 29 100.0 32 ............................. CGGCTGGGCTTCCTCATGGTTGATGATCTCCA 28518 29 100.0 31 ............................. CGGCTGCTCTCGCTTAGCCACGACGAGAAAT 28458 29 100.0 32 ............................. TCCAGGTAGGTCTTCGGCATCTACAGCTCCTT 28397 29 100.0 32 ............................. AAGGGACCGTTCTGTTGGTCAAAAACGTGCCG 28336 29 100.0 32 ............................. GGGCTAGATTTGGCAGCGCGACGCCGTTACAA 28275 29 100.0 32 ............................. CGTCCGTCTCGCCCTCCACGTTGGTGGCCTTG 28214 29 100.0 32 ............................. TGTGCTACAATCTACAACATAAGCGCAGTTAT 28153 29 100.0 32 ............................. GCGATAGGCGCGCAGCAGGATCGATATTGAGA 28092 29 96.6 32 .C........................... CGGCGTCGGCGTGGCGAAGAAACACAAACAGG 28031 29 96.6 32 .C........................... TCGCATTCGGCTCCATGCGACGGAGCCGGGAC 27970 29 96.6 32 .C........................... TGGCCTGCATCGCAATGGCGCGGTGCGGGCCA 27909 29 96.6 33 ............................A GCAGGCGCAATTGTGGCAGCCACTGGCGCGCTT 27847 29 96.6 32 .C........................... AATTCCCGGGCCATTCGGTTCCATTTGTTGAT 27786 29 96.6 32 .C........................... CGGAGCTGCGGCGCATGGCCCTGGAAGCGCAT 27725 29 93.1 32 .C..........................A GCACCGGCCCCGATCTCTCCCGGCCCCTCACC 27664 29 96.6 32 .C........................... ATTGAGCAGGTGCTCCAGTACATGCAGGATAC 27603 29 93.1 32 .C..........................A TCCAGGTTAGCGAACGCACGTTCCACAATGAC 27542 29 96.6 32 .C........................... AAAAAGGCTGCCACGGCCTGGCTGAACGGCAC 27481 29 100.0 32 ............................. ATTGAGCAGATGCTTCAGTACATGCAGGACAC 27420 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 36 29 98.8 32 GTATTCCCCACACGCGTGGGGGTGAACCG # Left flank : GTGCGCCATGCCTGTCGGGATCTCTTTCACCGGGAGCGGCTGTTGGGGCGCATTTTAGACGACATCGACCAGTTGTTAAACCTGACCCGGCCCATGACCCGGGGGCAGGCAGATCTGACCGTGGATGTGGATGCGGACCCGGCCCTGCCGGGCGAGCTGTGGGCACCGGAAGAGGAAGACGACACCGTGGCGGGGGGCGTGAACTATGGTGGTGATGATTCTTGAGCGGGTGCCTGCCTCGTTGCGGGGTGAACTGAGCCGCTGGCTCATCGAGCCCCACCCGGGGGTATTCATCGGGCACGTGTCGGGCATGGTGCGGGATCGCCTGTGGGAGAAGTGCTGTCGGCGTCGGGACACAGGGGGCATTCTGCAGGCGTGGTCGACAAACAACGAGCAGCGGTTTACAATACGGACCTACGGGGACACCCGGCGGGCCATCGTGGATTTTGAAGGTTTGCAATTGGTGTGCGTGAAACCTGTGCAAAACTCGCGCAAATAGA # Right flank : ATGTCGGTCCCATTCCATTAACCATGGAAGGGCCCTGCCCCGCTGTCACGCAAGGATGGGTGACCTACGTCCTGTCGTCCGCCGCCGTATCCCGGGGGAGGGCGGCGGGTGCATGGGCGGGTTCACATCCCGTCGCAGGTCCGGTCTCCTGGCCGGACAGGGGCCCTGCCCCGCTGTCACGCAAGGATGGGTGACCTACGCCCCGTCGTCCGTCGCCGTGTCCCAGGTGGAGAGCGGCGGGTGCATAGGCGGGTTCACATCCCGTCGTAGGTCCGGTCTCCTGGCCGGACAGGGGGCTTTTTTCCCTCAGGTCGCCAACGCCCGGTACAGGTTCACCATCTCGATGGCGGCCAGGGCCGCCTCGGCCCCCTTGTTGCCGGCCTTGCTCCCCGCCCGCTCGATGGCCTGTTCGATGTTCTCGGTGGTGAGGACGCCGAAGGTCACAGGGACGTCGCCCTGTTGCAGGCCCACCTGGGCCACCCCCTTGGCCACCTCGGCCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18765-33323 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIGC02000029.1 Litorilinea aerophila strain ATCC BAA-2444 NODE_29_length_80960_cov_40.189947, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 18765 37 100.0 37 ..................................... ACATCCGGGCCCGAAAATGTGACAACACTCCCCACCG 18839 37 100.0 35 ..................................... GAACCAGGCCGCATTCAGCCTGGGCCAGCTGGTGG 18911 37 100.0 40 ..................................... CCCAGGGTGACGATAGGGGTGACGATAGGGTGACGATAAA 18988 37 100.0 38 ..................................... GGCGATAGCCTCTTCCCACGTGGCCCCCCGCAAAGCCG 19063 37 100.0 38 ..................................... TTCCCCAGTGGTAGAGCCCCCCAGGGTGACGATGGTGA 19138 37 100.0 35 ..................................... CAGTGTTCGCGGTGCGGGGCGCGCACGGCAAGTGA 19210 37 100.0 36 ..................................... TCGCTGCCCGGTCACGGCCCGATAGATGGTAATCTT 19283 37 100.0 36 ..................................... TCCGCAACTCAAAAGCCGCCTGCCATCCCTCTGGAC 19356 37 100.0 36 ..................................... AGGCCGCGTCGCGCATGGCCACCAGGGCCTGGCCGA 19429 37 100.0 36 ..................................... CTTCGTCAAATGAGTGAACAATACAAGTTTCAACCC 19502 37 100.0 37 ..................................... AAGAATGGAAGGCCCTACGGCTGTCGCGGTCATGGCT 19576 37 100.0 37 ..................................... AGTCCGCGCACCAGGACCGTGCCCCCCCACTCGGGCA 19650 37 100.0 37 ..................................... TGGCCATCACCGCATCTGCCCCACGCAGGGCCGGTCG 19724 37 100.0 35 ..................................... AATGACGGTTCGTTCGCTGCCATCCCGGTATTTGA 19796 37 100.0 36 ..................................... TGGCCAGCTCGTGCCTTTTAAGTCCGTTTGGTTCGC 19869 37 100.0 36 ..................................... ACCCACACCACACCACACCTCCTCTATGGAAGAGGG 19942 37 100.0 35 ..................................... CGTTTTCCGCCGCCCGCGTTGGCGGAAAACGAAAA 20014 37 100.0 36 ..................................... ACCATCCGCAAGCCGGTACGGGCCGGGCGCTGCCCC 20087 37 100.0 35 ..................................... ATGTCCTCTCCCCCCTTTAGGGGGGAGCTTCCGGC 20159 37 100.0 36 ..................................... TGCGCCTAGCCGTCACTAGCAGTGGGGCGCCGCCAT 20232 37 100.0 37 ..................................... TCATTCGATCCGGGCGATTGTCAGTTGGGGCTACAGA 20306 37 100.0 35 ..................................... TGGCACCAACATGGCGGCCTCCGCGTCGGTCACCT 20378 37 100.0 37 ..................................... TGCAATAGTGTTCAGTTCACAAAAAGGAGGAGAGATG 20452 37 100.0 36 ..................................... ATGTCCTGACGGCCCCGTCCGGGCCGGGTTGATGCA 20525 37 100.0 36 ..................................... GAGAGAAAACTCGACTCATCGTCTGCCGATAACTCG 20598 37 100.0 36 ..................................... CATCCTGGCCAGCGACGGGACCATATCCAGGGCGTA 20671 37 100.0 35 ..................................... AGGTTTTTGTCGGGGGGACCGCCCCCCCGCAACTG 20743 37 100.0 36 ..................................... ATTTTAGTCAGGTCGGCGATCTGGTACTCGTGGATT 20816 37 100.0 36 ..................................... ATATGGACCGTGTCTCCTACCCGGCGCTTTTCGACG 20889 37 100.0 36 ..................................... CGCCATTTTTGGGCCACCTCGCCCGGGAGGCCCTGC 20962 37 100.0 37 ..................................... GCTGGATCGCGTCCTGGGTGGTGCTCAACTCGACAAC 21036 37 100.0 35 ..................................... GGGCCATACTGCTGCCAGGTGGCTGACCACTCCCC 21108 37 100.0 37 ..................................... ACTGATACGCAAGTGGTCAATAGTCGTACCGTTCAGC 21182 37 100.0 37 ..................................... GGGCTATACGCAAACCAGGATGGCAGGCCCGGACGCC 21256 37 100.0 35 ..................................... GTACAACGCCTGGGCCACCTGGGCCGGATCATTCA 21328 37 100.0 37 ..................................... AGCTAGCCGGGCCTTCCTCTTCGCCCCCGTCTTCGTC 21402 37 100.0 36 ..................................... TTTCCGTACCCACGCGAAAAACAAGCGCGCTGCATC 21475 37 100.0 36 ..................................... AGCCGGTGGAGGGGGACACGGCCAAAGACGCGCTCC 21548 37 100.0 36 ..................................... GGCAGCATCGGCATTGTCCAGCAAATGGAAGATTCC 21621 37 100.0 37 ..................................... TGGAGTTCGCCGCCATACAAGAAGTCGTCAACAAAGA 21695 37 100.0 36 ..................................... TCTACCAGTGAGCTGGCGGCCGGTGCCGTAACCGCA 21768 37 100.0 35 ..................................... CGGCGTAGCATACGCCTTCTGCTCCGCCTGTACGG 21840 37 100.0 37 ..................................... TACCACAACGGGGAAGAGCTCATTGACTTGGGGGCGG 21914 37 100.0 35 ..................................... CTCATCCCGGCCACACACCACGATGCCGGTCATGT 21986 37 100.0 36 ..................................... CGGCGGCGACCTGAAAACGATTGCTGACCGTATCGA 22059 37 100.0 36 ..................................... CGTTCTCGCTCCAACTCCGGCTGGGGCGGCCCCCGG 22132 37 100.0 36 ..................................... CAGATAGAGGGTCGGCGGCCTGGATCGGCCATGTTG 22205 37 100.0 35 ..................................... GCGTGGCCGTCCCAGCCCTCGCCTGCTCTACAACC 22277 37 100.0 36 ..................................... TTTGCCTGGCGTGTGGCACTTGTAATCCGGCACCGT 22350 37 100.0 36 ..................................... CGATGGATCCAGGATATCATCGCTGCTACTCCGGGA 22423 37 100.0 35 ..................................... TCCCCAGGCGTCCCGTCCCGACTCCCGCAGGTAGA 22495 37 100.0 35 ..................................... CGCCAGATACATCAACCTGTACTGCTCCTGCATAA 22567 37 100.0 35 ..................................... CGTCGCATTCTTCCGCCGCTTGAAAGCGGGTGAAA 22639 37 100.0 36 ..................................... CGTTTCTAGCCCGGCCCGGGCCAGAGCCCGATTGTT 22712 37 100.0 34 ..................................... ACCCCTGGCTGCTATTGGTCGCCAGGCGCTACAG 22783 37 100.0 35 ..................................... CATTCCGCACCAAATTGCGCCCCACCCAAGCACAG 22855 37 100.0 36 ..................................... CGTAGAGCGTTACGGCGTCTACACCGGAACGTTTCT 22928 37 100.0 38 ..................................... CTCATCCCGGCCACACACCACGATGCCGGTCATGTTGC 23003 37 100.0 36 ..................................... TGTGCTTATTTCGCCACGCCGACCTCGCCGCTGCGA 23076 37 100.0 37 ..................................... TTGCGCCAGCGTCGACGGCATGGCAAAAAGCGCGGCC 23150 37 100.0 36 ..................................... TCCGCCAGATACAATGCAGGCTGTAGTTGCCGCTGA 23223 37 100.0 36 ..................................... CCGCTTCTATGTCCGCCAGCAGCAGGCAGTGGCCGA 23296 37 100.0 37 ..................................... TTGGGTTAGGCCCCAGGGTGGCGTGGTAGCGCCGTCC 23370 37 100.0 37 ..................................... TGCACCAGCGCGAAATCGGCGCCCGGCCACAGCGTCA 23444 37 100.0 36 ..................................... ATAGCTTCGGCCCCGGCAGTCGGCCCTCATGCGGCG 23517 37 100.0 36 ..................................... CATTGTCGCCGGCGCCTGGCCACATTGTAGCCGGTG 23590 37 100.0 34 ..................................... TTCACCCACCCCACGTAGGTTGACACCTGATGGG 23661 37 100.0 39 ..................................... ACACCTGGCGCGGCAAACGGGCATGCGTCCAGCAGGAAG 23737 37 100.0 38 ..................................... ATGGTGAACGTGGCCTACTACTGGCGGCCCGACATCCC 23812 37 100.0 35 ..................................... CACCGTTTGGCGGCCCAAAAATCGCAGCCGGCTCC 23884 37 100.0 38 ..................................... ACAATCCACCAGCTTCCGTCCCGGGCCTGCCAGGGTTG 23959 37 100.0 37 ..................................... GACGAGGAGGGGCTCTGGGTGCGCAGTCTGGCCGGCA 24033 37 100.0 37 ..................................... ATTATGGCTGGTTGCAACTCGCCTTTTTCCGGTCCAG 24107 37 100.0 35 ..................................... ACGCGCTAAGCGCCACCAAGGCCAGCCTGTTCAAG 24179 37 100.0 34 ..................................... CCAGGCAGGCGCAGCGGCCCAGGCTGCCAACGCG 24250 37 100.0 35 ..................................... ATTATATGTCCTCCTTGCCCGGTTATTGTCGCCCG 24322 37 100.0 42 ..................................... CACCCAGCCGATGCGTGGCAGACGCACGCGCTTTTCTTCCAC 24401 37 100.0 39 ..................................... TCGACGCAGCAAGCGGGCAGTTCACCGGACGTGTGGCGG 24477 37 100.0 37 ..................................... AGCCATGAGCGTTGAAATCATGACGCGTGTCTGGCAT 24551 37 100.0 37 ..................................... CGCCCGATGAGTACGTCGCCCGGCTCCAGCGTGCGCC 24625 37 100.0 36 ..................................... ACTGGATGCCGGGAAAGAGGGCTTCCTGCAGATGAA 24698 37 100.0 35 ..................................... GCGCAGATTCAGCGCATGATTGAGGCCACAGACAA 24770 37 100.0 36 ..................................... TTCCGCTCGTAGCGGTAGCAGATGGGACACAATCCG 24843 37 100.0 36 ..................................... ACGTTGTCTGGCGTGGTGTACTTGATTTGGTCGCGC 24916 37 100.0 37 ..................................... GCGGTTCCGTGCTCGCCGGCGCGCCGTCGCCGCACGG 24990 37 100.0 36 ..................................... CGTACTACTGTGTTATCTACGGCCAACGTGAGCACG 25063 37 100.0 35 ..................................... ATATAGTCGGCCTCCGGGGCGAATGTGTGAGCACT 25135 37 100.0 35 ..................................... TGTCGGTCGTGGCGGCACAGACAGCGGCCTTTCCG 25207 37 100.0 37 ..................................... TCACAGTTCATGGCCGCAACGGCCAAGGAGGATGCAG 25281 37 100.0 37 ..................................... ACATTTAGCCGAAAACGTGACATCCACGTCACATTTT 25355 37 100.0 35 ..................................... GTTCAGCGCGGGCGAGGCTGCCCAGGCCATGCTGG 25427 37 100.0 34 ..................................... TGCTATCACTACAGCCATTGGGGCCATCGCCTGG 25498 37 100.0 37 ..................................... CGACGGTCAGATCCTCCCACACGTCCAGCGCACCCAG 25572 37 100.0 38 ..................................... ATGCTGTTAAAGCCGCCAACCCCCAGGGCGCGATATTG 25647 37 100.0 36 ..................................... CCTGCTCAGCCCCATCGGCCTGGTCGTGGCTGCGGT 25720 37 100.0 36 ..................................... CCACCGGATCCAGGGGCGCAAGTTGATCAGGCCGAA 25793 37 100.0 36 ..................................... CGTAGTGGCCGAACTGGCGCAGGTAGGCGTCCACCG 25866 37 100.0 37 ..................................... ACAGCGCAGGCGGCCGAGCCTGGCGCCGGAGGCGTCG 25940 37 100.0 37 ..................................... CGGCACCACCGAGCAACCGAACACCGGCGTTCGGAGC 26014 37 100.0 38 ..................................... CTTGCTCGGTACAGAGGCGGCCGGCGGCGCGACATTCT 26089 37 100.0 37 ..................................... GCGCTCCAGCTCCAGTTGTCGTCGGCGCTCGTTCGAG 26163 37 100.0 35 ..................................... AGCAAATGGAGGAATCACTGATGCCACCGCGAATC 26235 37 100.0 37 ..................................... GGCCGTTGGCGTGGCGTAGAGCACCCGACGTCCGGCC 26309 37 100.0 34 ..................................... AATCTGCCCGCCGTGAGCATCCGAGGCCCTGGGC 26380 37 100.0 35 ..................................... CCAATTGACGATTTCTGACGGTGTGCCCAGGCCGA 26452 37 100.0 38 ..................................... CGAATCTACATTGACTACACAGATAACGGCGGAATCTG 26527 37 100.0 38 ..................................... CACCGTTGACTTGGCAAAATCGCACCAGTCCTCCATCT 26602 37 100.0 36 ..................................... TCACTGTTGGCCAACTCCAGTTTGCCGAAACGGGTG 26675 37 100.0 37 ..................................... ATTGAGCTTCACGCCAGGCCGCCCGGTGCACGGCAAA 26749 37 100.0 36 ..................................... GGTCCATTCCCAAGTCTTGCAGAATGTCCAGGTGCG 26822 37 100.0 37 ..................................... CCAGGTGGTTGCGATACGTTGGCTTGCTCACGCTTCC 26896 37 100.0 36 ..................................... TTTGATGCGCTCAAAAACATCGTCGTCAACATCAGG 26969 37 100.0 36 ..................................... ACCTCCCAGTAGGTGTCCACGAACCATACGCTTCCA 27042 37 100.0 37 ..................................... CGCATCATCGAGGCCAACAGCACGCCGCGCACGAAGG 27116 37 100.0 37 ..................................... GTGAACGGCCTGCGCTACAGCACGGCCACAGCCACAT 27190 37 100.0 36 ..................................... AATAATCTGCGCCGGCGCCTGGCCACATTGTAGCCG 27263 37 100.0 36 ..................................... AGCAACCCCGGCAACCGCTCCCAACCCCGCTGCGCC 27336 37 100.0 34 ..................................... CTGGCCAGTAGCTGCGGGATCAGAGCAGTCGCAG 27407 37 100.0 36 ..................................... GACCCAAGTTTTTCAATTGGGGCAGCGGGCCATATG 27480 37 100.0 39 ..................................... TGCCCGCGGCCCACGCCGAGGACGACCGCCCATCAGCTC 27556 37 100.0 36 ..................................... CGCTTTGACGGCAGACGCCATCAGGTTGGCCGATAG 27629 37 100.0 36 ..................................... TCAGATCTGTCTGAGGCGCTGGCTGCACTACAACGA 27702 37 100.0 39 ..................................... CAGCATATCCGCTGGCCAGGCAGACATGGTCGGAGTCGA 27778 37 100.0 37 ..................................... CAGTACGCCAGCACGTTGCCCGTGGTGCCACTGGCTG 27852 37 100.0 36 ..................................... TAACGGGCACTGCTTCAGAAGTAGCCACCCAGTTAC 27925 37 100.0 38 ..................................... GGACTGAAGGAGCAACAGCCATGAAGCGCAACGACTGC 28000 37 100.0 36 ..................................... TCTCGTGAGGCCCACGGCAAGCGCCGTAGTTGTTCT 28073 37 100.0 39 ..................................... CAGTTATCTACGCCGCTGGGGACGGCGCATCTCGCAGTG 28149 37 100.0 35 ..................................... GCCAAAAACAAATCCACCTGGATCCCGGCAGCATG 28221 37 100.0 36 ..................................... CTCTTTTGACGAAATTTTGTCGAGTTTGAACGAGTT 28294 37 100.0 37 ..................................... AATGTTTATCGTGTGATACAGGAGGCAACACCATGGG 28368 37 100.0 36 ..................................... AACGGGAAATTCTACTGGATCGAGACGACAAGAACA 28441 37 100.0 36 ..................................... CAATGATCCGAACATCGAAAGCATCTGGTTGGGGTT 28514 37 100.0 35 ..................................... GCCATGAAATGCGTCAATTGCGGTGCGGACATCGA 28586 37 100.0 35 ..................................... GTCGGTCGCAGCTGCGCAGGCAACGGCCTTGCCGT 28658 37 100.0 36 ..................................... CGGTATCCGGCACGCGATTGCAGGCCGGGGGGCACG 28731 37 100.0 38 ..................................... CCCGGTTGCCGTCGAACGCGCCCGGCGTCTCCTGGCGG 28806 37 100.0 36 ..................................... AGCCACATTGACGATCCGGACATGGTCCGGGGGCGC 28879 37 100.0 37 ..................................... GGAAATATCCGGGGACCAGCTACGATTGGCCGACAGT 28953 37 100.0 39 ..................................... AACTATGGAGGCACAGCCAGGGCCGAGAAGATGACGATA 29029 37 100.0 36 ..................................... CATCGCCCTGGTGGGCCGTACGTCCATCTTCGCCAA 29102 37 100.0 38 ..................................... CCGGGCAGGCCGGCCGTTCTGGTGGAGGGCGAGCTGGG 29177 37 100.0 35 ..................................... AATCATAACCACCTGGGCCCGGCTGCAGCGTTCCA 29249 37 100.0 36 ..................................... ATCATCAATAGCGCCCACTCGGTGCAGCCACCGCAC 29322 37 100.0 34 ..................................... TACCTGGTGCAGAGTGGGGCCTAACGCCTGTTTC 29393 37 100.0 35 ..................................... AGGCTAAGCGGGGATGTGGACATCGTGGAGGCGGT 29465 37 100.0 38 ..................................... CGGCGTGCGCGTGGACACGGCCACGCGTGCGCGTATCG 29540 37 100.0 38 ..................................... CGGCGTGCGCGTGGACACGGCCACGCGTGCGCGTATCG 29615 37 100.0 38 ..................................... TCCGTAGTCGCCCGGCGCGCCCAGTTGACGGCCGGACA 29690 37 100.0 36 ..................................... CAGTTATATTGCGTTTTCTGCCAGGGGCAACACCAG 29763 37 100.0 37 ..................................... ATCGCCAGCCAACAGGCCGACACCGATGAACAGCTGA 29837 37 100.0 36 ..................................... ACCATTTTCTTCCTGGCCGCGCTGGCCGTCTGGTGG 29910 37 100.0 37 ..................................... TTCGATGATGCTCACGATCTCGTGCACCACGTAGAAG 29984 37 100.0 37 ..................................... TGAGAGGGCGCGGCAGGAGGCGGCCAGCATTCCCTTC 30058 37 100.0 37 ..................................... AGCGTCTTCCAGCCCCACTGGGCGGCGTGGGACCCGT 30132 37 100.0 36 ..................................... TCCTTCTCTCGTTCAGGGTTTGATCCTGACCATACA 30205 37 100.0 35 ..................................... AACTTCGGCAACATCTATGCGGGCCAGCAGATGTT 30277 37 100.0 36 ..................................... ATACGTCGTCTGACGGCATTTCGTGCTTCATGTCCG 30350 37 100.0 37 ..................................... CTGCCAGAGAATTGTACATCGGGGGCCGTAATGTAAA 30424 37 100.0 35 ..................................... GAGCCATTGTGCCTGCTGCTCTGTGGGCTGATGAC 30496 37 100.0 35 ..................................... GAGCCATTGTGCCTGCTGCTCTGTGGGCTGATGAC 30568 37 100.0 36 ..................................... CGCCTGACCGGCGCGCCGGTCAATGTGCCTGCCAGG 30641 37 100.0 37 ..................................... AACAATCTACAGTTCGGAGTAGAGATTCTATAGGAGG 30715 37 100.0 35 ..................................... CTCTTTGAGGAAGAGGAGCTACAAACGCTGATGAA 30787 37 100.0 37 ..................................... GACATCTACAGGTGTCGCCTCTGCAACCATCCCCGAG 30861 37 100.0 37 ..................................... AAATCTGCCTGAGCTGTCCATATATGTGCGCCAGCTG 30935 37 100.0 35 ..................................... AGGGAAAACGCCAAAAGAACCGTCGAACAGGTTAG 31007 37 100.0 35 ..................................... GAACCGTATCTTGATGGCAGAATCGTTAATGTAGA 31079 37 100.0 36 ..................................... CCTCCTGACGATCTGGTAATCGAGGATTTGGCTGGC 31152 37 100.0 36 ..................................... CAAACACAGACAGAAGGAGAAGGCAGCATGATTGAT 31225 37 100.0 36 ..................................... ACGCAGGCGATATTCGCCGGAGGAGCCGGTGCTGTC 31298 37 100.0 36 ..................................... AGGCTGAATTTCAACCCTGTATGATGGCCCTCGTTT 31371 37 100.0 36 ..................................... TGCCAAGAACTACAAGCAGCTCCAGGAATCTCGCTC 31444 37 100.0 37 ..................................... GTGCCTCGTTGCCGATACTGGTATATTCCTCAACGCC 31518 37 100.0 39 ..................................... CCGGCATGAGCACCAACTGGAACGGCGAGGAGAAGCAGC 31594 37 100.0 38 ..................................... AACAGTCGGTCCCTACTGGGCGCTTACTGGGCGCTTAC 31669 37 100.0 35 ..................................... AGCGGAACGCTGGGGGCCACGGTAGGCGTGGATCG 31741 37 100.0 35 ..................................... TAAAATGCACGATGGTACGTGGTGTTTTGTCCCTC 31813 37 100.0 37 ..................................... CTTCGTCCCGCCCCTTCACCCGACGCCAGCCGGCGTC 31887 37 100.0 38 ..................................... TTGGTGCACTTTTTTAATGTTGTTTCGGTTGACATGTG 31962 37 100.0 36 ..................................... CGGGCCAGATGCCGAGATGACCAGGCCAGTGCTGCT 32035 37 100.0 38 ..................................... TGACTCTGTCAAGATATCCCCGCTGTTAAGCTGGATGG 32110 37 100.0 38 ..................................... AATCTGGACGCGTCCGGCGGGCTGGAGTTCAACAGTGG 32185 37 100.0 35 ..................................... CTCCACCAGGCCGCCGGAAACGAGATTGGCCGCAG 32257 37 100.0 37 ..................................... TAAAAAGAACGGGCGCCGCCCCAAACGAGTTGAGACG 32331 37 100.0 38 ..................................... TTTGTACTCTGAGGAATAAATCATGGCGGTGGGGGATG 32406 37 100.0 39 ..................................... ACGGAGCTGCACTACATCAATCGCAACCCGCGCCGGGCG 32482 37 100.0 36 ..................................... TTTTTTTTCAGGTCAGCGATACTGATACCCATCCGG 32555 37 100.0 37 ..................................... GCCGCTGCACGTACCGGGTGCCCGGGTGGACAGGGAG 32629 37 100.0 35 ..................................... CGATTTGCCAACACCTGTCGCACAGGCGCAACCAG 32701 37 100.0 36 ..................................... TCCCTATCACCACACATTCAAACTCTGGCGTGCAAG 32774 37 100.0 35 ..................................... TGTAGCATCCGATCACACGCGAGGCCGGGATCACG 32846 37 100.0 37 ..................................... CGAATTGATCCGAGAGGACATTTTGCGGGATTTCGCC 32920 37 100.0 34 ..................................... CTGGACGAAGCGGTTCAATCAGCGAGCGGCGCAC 32991 37 100.0 36 ..................................... TGCGCCAGAACAGGCGTTCCAGGCGCTTCGGGCGCC 33064 37 100.0 40 ..................................... CACCGCCATCGCGCTGGACGACGACCACCGCGGCATCTGC 33141 37 100.0 38 ..................................... AGCGTCCGGGTCCTGCCAGGCGTAGGCGCGCCGGTAGT 33216 37 100.0 34 ..................................... TGCTCCGGCGTCGCTGTCGGCCTGCTGGTGCTGG 33287 37 86.5 0 ...............................GCCCC. | ========== ====== ====== ====== ===================================== ========================================== ================== 199 37 99.9 36 GTCGAAGGCCCACCCAACCCATCCGAGGGATTGAAAC # Left flank : TGTTTTTTGAACGAGCGGGACTACCTGCGTCTGCAGGCCATGCTGGCTGAGCATCTGGAGGACGCGAAGGATTCAGTTCGCATCTATCCCCTCTGTGGGACCTGTCAGGAGCGGGTGGAGACGGTGGGGGGACCACCGCCGGAGGAGCCGGATCTCTATGTTGTTTAGCAAAGTGAGGAAGGGAGCAGAAAAAAGCTGCGAGCAAGGGAGCAGGGCCGACCCTGGAGGGAAATCCTCGCAAGGGCGGGTCCTGGCTTTGGCCAGTGTATCAGCCAGGGGTGGGATGGCCGTTCTAGGCTGGATGAAATGGTGGACAATGGTTGGGATCCATAACCGAGCCGGATTGGCGGAGAGGAGAAGACCCGGTCCTCGCAGGTGGGAGGCGATACGGCTGTGCTGTGGTATAATAGCATTGTGGGTTGCAGAACCCATCAAAAAGGGGGAGCATAGGGGACGAAAATCCCAGGATCCCACGTGTTTTTAGGGAAAATGCGAGAGCG # Right flank : CCCTCTCCCACCACGCCAACACCACCCCTCTGGCCCCCAATGTGGTAAAATGCAGGTATGACACGGCAACTACCAGAAAAAGTCGCCCAAAAACTGGCCAACCTGCCCGACCGGCCCGGTTGCTACCTCATGCTCGATGGGCACGGCAAGGTCCTCTATGTGGGAAAAGCCGTCGTCCTGCGCAACCGGGTCCGCAGCTATTTCCATGCTTCCGCCCAACATTCGCCCAAAACCCAGGCCCTGGTGGAAGAGATCCAGGACATCTCCTGGTGGGTCACCCAGACCGAGCTGGAAGCCCTCATCCTGGAAAATGAGCTGATCAAACGCCACCGGCCCCGCTACAACGTCCGCCTGAAGGACGACCGCCAGTACCCCTACATCAAGGTCAACTGGCAGGACGACTTCCCCAAGGTGGAGGTGGTCCGCCGGATGGACAAGGACGGCGCCCGCTACTTCGGCCCCTATACCAGCGCCCGCGCCTGCTACCAAACCCTGGACGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAGGCCCACCCAACCCATCCGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 1 174776-174437 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIGC02000002.1 Litorilinea aerophila strain ATCC BAA-2444 NODE_2_length_315190_cov_45.834068, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 174775 38 100.0 37 ...................................... TACCTGGTCAACCTCCAATTGAACATGTGGGTCAACG 174700 38 100.0 37 ...................................... AAAAGCGCACTAATGCAAATGAACAGGACAAGTCTCT 174625 38 100.0 38 ...................................... TGTTTTTTTATGGGTTGGTTACTTTACCGGGTCGCCAT 174549 38 100.0 38 ...................................... AATGGCGACCAGTGAGCCAAAGAAACGGTTGTTCATTT 174473 37 81.6 0 ........................C..A-...C.CG.A | ========== ====== ====== ====== ====================================== ====================================== ================== 5 38 96.3 38 GAGCCGAAACAAAAAATCCCCGCCAGGGGATTGCGACC # Left flank : CCGGCGGATGGGTCCATACTCGGCCAGAAAAAGGGCGGTGGGCAGGGCCTCCACAGCCAGAAGACGCCGGAGCGCAACCTGAGCGGACGGGGAAAGCAAAGAGAGGAGACGAGGGGGCGCCTGGGGGGAGAGCAAGAACGCGTGAATGGTCTGCACCCATGCCTCCTTTTGATTGACATGGCTCCGGCGCAGAGAGAGGCGGGTGGCCATGGCGCGCAAATCCCGGTGGGGAAGACGCTGCAGATGGTGCCAGAGTGTGGACATGGTGACGACCTAGGGAGGGGGAAAAAATCGAGTTTGACGCCTGGGGCGTCTGGACGTATAATAAGTATGGCAGGTGAAGGGAGACGCGTCAAATCGCGCCAGATTGTGAAGGTTTGGAGGGGTTGTGTTGTCCATTTCACCGCGAAAAGTGGCCTGTAGGGGGGGGCGAGCCGAAAAGTGGCGCGATAAAACCACGGTTCGGGGTGAAAAACGGGCAAATCTGGCGCGATCAGGGG # Right flank : GAAATCCTGATAGGGGCTGAAAGGCCGCCGTGGGGCGGCTTTTTTTCTTTGTGAGAGGCGTCTTATTTATCTTGGGGGCGAAGCGGATGATGGCCTCCCTGCCACGCAGAGAGGCCAGGAGGCCGGACTTATGACGTGGCCGTGAACCGCAGGAGTAGCGCAAGTTCAGCTTTTCATCATTCTGAGCTCCGCGAATCTACCCCACGCGAAAACGCCAGGCGGGGAGGAACGTTCCTCCTCGCCTGGCGTGGGCGACATCATCAAGACCCCTGTAGGGCTGCCCGGGCCAGCCACGCCGCACCCACGGCCGGCTCCACGGTCGGGTGGCCCACAACGGCCTGGGGCAGCAGGTGCCCCACCCGCTCTCGCACCCGGGCGGCCAGGTGACCCGGCCCAGTGGCGGCCTGGAGCAGGTTGCCGGCCAATATCAGGGGGAAGGGCTCCGGGCCCTCCGCCAAACCCAGGCCCCGGGCCACCGCCAGCACTGCCGCCACCAGCTC # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGCCGAAACAAAAAATCCCCGCCAGGGGATTGCGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 18501-61 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIGC02000021.1 Litorilinea aerophila strain ATCC BAA-2444 NODE_21_length_115497_cov_47.498422, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 18500 37 100.0 36 ..................................... TCCAGCAACGCCAGGCGGCGCAAGGCGTGTCTCAAT 18427 37 100.0 37 ..................................... TGGCGATTGTGGCGGCGGGGACGGGGGGAGGGGCGTG 18353 37 100.0 40 ..................................... AGGCCCAACGGGCCGCGGATCGCCAACAGCCTGCGCCGGG 18276 37 100.0 36 ..................................... GGAGCGCCAGAACGGCGGCCCCCTGGGCGACCTGGC 18203 37 100.0 39 ..................................... AGGTGGACGGCCAGCGCTGGCTGGCCATCGAGCCCCATA 18127 37 100.0 36 ..................................... GCCACTCGAACCAGGCCGACAGGGCGCGGTAGCGGG 18054 37 100.0 36 ..................................... TCGGTGTAGGTGGTGCTCCCGGCGTTGTCGGTCACC 17981 37 100.0 40 ..................................... TTTGGTCGCTTCGGCGATGGCCGCCTCCACCGCCTCACGA 17904 37 100.0 35 ..................................... AGGCAGCGCTGGAAGAGGAACGCAATCGCATCTAT 17832 37 100.0 38 ..................................... TGCTGGCCTGGCTGGAGGAGCAGGAGGCGGGATTTGAA 17757 37 100.0 37 ..................................... GTAACCCGGACCCTGAGGCCCTGCGCGCCATCATCGG 17683 37 100.0 36 ..................................... ACCCAACGGTCGGGATGCCGGTACAGGTAATAGGCG 17610 37 100.0 39 ..................................... CACCGCATCATCGCCGGCGACGGCCACCTGTTGCTGCTC 17534 37 100.0 36 ..................................... TCAAGGGGGATACGCCAGCATGGGCAACCACCGCTC 17461 37 100.0 37 ..................................... ATGCGGGCGTACTACTGGGCCGACCGCCTGGCATCTG 17387 37 100.0 36 ..................................... TGCAGAACCTGTGGCAGGCGATCCAGCCCATCCTGA 17314 37 100.0 36 ..................................... ATGCGAGCCCAACCGGTCGGCGTCAACACGGGCTCA 17241 37 100.0 36 ..................................... TCCAGGGGCCGGGGCGTCGGTATCTCATCTGCAGCG 17168 37 100.0 39 ..................................... TTGCCCCGTTCCACCAGGATCAGGTTGGCCCGGGTGTCG 17092 37 100.0 37 ..................................... AGGTGCTGGTGTAGCCGCTGCAGGGGGCCGATGATGT 17018 37 100.0 35 ..................................... ACATAGGGGCGTTCGCACATGCCAAGGAATTCCTC 16946 37 100.0 39 ..................................... AGCTCGAAACCGTACTGCCACACGTACGAGTTCAACAAG 16870 37 100.0 36 ..................................... AACCAGATGGCGACGGCTACCGGCACCGTGTAGAAC 16797 37 100.0 40 ..................................... ATTGATGTACTCGCCCAGGCGCACGCCCAGGGTCTGCGCG 16720 37 100.0 35 ..................................... GCACGGCCTCGATATGCCACTGGCGCACCGGCTGC 16648 37 100.0 40 ..................................... GCAACAATGCGGCGCATTTCCGGCCAGAGGTTTCGAGAAG 16571 37 100.0 36 ..................................... TGCCGGGCCGGCGTCATGTGTGGCTGCGGGGCCGGC 16498 37 100.0 38 ..................................... CGCCGCAATCCAGGCCGACGTTGGCGTCCGGCCAGCGC 16423 37 100.0 38 ..................................... CGGAAATTGCGCCGGTCCGTGCGTTTCGGTGGCGCGGT 16348 37 100.0 37 ..................................... TGGCTCTTCGTGAACTTGGGCAGCCGTGGGCAGGAGG 16274 37 100.0 38 ..................................... AACGCTTCAACTGGCGTCGGCTGCGCGAAGAGGGCGAG 16199 37 100.0 36 ..................................... CCACGTTGTCTAGCTCCAGGCGCTGGCGCTCCTTCT 16126 37 100.0 37 ..................................... GTATTGTCTGGCCGTGCTTCACAAGCACTGGCCGGAG 16052 37 100.0 36 ..................................... CGCACACGCGCCTGGTTGGGGATGCACGCCTTGATG 15979 37 100.0 37 ..................................... ACTGTCGCAACAAATCGGCGAACCAGGCGGAGTTGTT 15905 37 100.0 36 ..................................... GGGCGTAGGCGGATGGCGCGCCGTCGTTGTTGGCCG 15832 37 100.0 37 ..................................... TGAAGGCTATTTACAACATAACTGCGCTTATGTTGTA 15758 37 100.0 34 ..................................... AGGGGTTATCTCTTTCAATGCGGGTGAGCCATTC 15687 37 100.0 35 ..................................... GGGCGCGGAGGTGTACGAGCGGCTGACGGTCAACG 15615 37 100.0 37 ..................................... AACATGGCAATGTTGCGGCTGTCGAGGGGGGCGTAGT 15541 37 100.0 38 ..................................... TTGACGCATCCGGATTGGTTCTGTTAGATGCCACCGTA 15466 37 100.0 35 ..................................... TCACCGTCATAATGGCGCAGGCAGATGGCCTGGAG 15394 37 100.0 36 ..................................... GGCTGACAATTTCAAGTTGTCCATTTGTTCTGACAG 15321 37 100.0 37 ..................................... GGAGTTGCAACGATTCACGACTCGCCTCCCTCCTCCG 15247 37 100.0 39 ..................................... AGGCGGAGCCGAATCAGCAGGCCGCAATGGGGGCGGATG 15171 37 100.0 37 ..................................... TGGTTTTTCCGTAGAACGAGAACACTGTCTTGTGTTT 15097 37 100.0 39 ..................................... AGAAACGATAACGACAGCGGCCTCCAACATGGCCTCAGG 15021 37 100.0 37 ..................................... TCCATGTCCAGTGCATGTGTTGGAAGGAGGCGGTGGT 14947 37 100.0 37 ..................................... AAAAGCGCCAGGTACAGGGCCAGCGGCTGGCGCAGCG 14873 37 100.0 35 ..................................... TGGAGCAGCTCGCGGTACGTATACTCCAGGCCGCG 14801 37 100.0 37 ..................................... TGGGTATCGGCCAACTGACTGTTGGCCATGATTGCCT 14727 37 100.0 37 ..................................... CCACGCGCACGTGGGTGGATTGAGCTCGCCGCGACTA 14653 37 100.0 36 ..................................... GGGCGAAGAGCATGTTGCGCGGGAACTTGCGCCAGA 14580 37 100.0 38 ..................................... CTCCAACCAGGCATCCTGGTTCAGGATCAGCACATCCG 14505 37 100.0 37 ..................................... CTCTCCGAACCACTGGACGAAATCGCTCAGCGCCATG 14431 37 100.0 36 ..................................... CTTCCGGGGATTCGGTGGATTCTGACCCCCTCGCCG 14358 37 100.0 37 ..................................... GGCCCCGGCCACCGCGGCCAGCGGGGTGGAGATGGCC 14284 37 100.0 37 ..................................... GAAGGGGCCACCGTATTGCTGGTGCAGGTAGAGGGGC 14210 37 100.0 38 ..................................... GGAAGCGGCCATGCTCCAGGAGGTGCCGGCATGAGCAC 14135 37 100.0 37 ..................................... AAGTCTGGTTGGGACATGAACATCCGGAGACCGTGGG 14061 37 100.0 38 ..................................... GTTGATGCACTGACACCGTGGCCAGCAGCTACCAGTGC 13986 37 100.0 38 ..................................... TGTCCACGGCCTGCCCGGTGCGTGTGGCGAAGACGGGG 13911 37 100.0 38 ..................................... TCAAGGGCCTCCAGCAGGTTGACGGCGGCCAGCGCCAC 13836 37 100.0 38 ..................................... TCACCGGTCATGGGCGCGGCAATTCGGGGCGACGGGCG 13761 37 100.0 39 ..................................... GATAGCGATAGTTCGCTCCCACCTTGAGGTGGCGGACGA 13685 37 100.0 39 ..................................... GTTTGCGTGTGAATTTGTTCTCTTATTTCCTTACCTTGA 13609 37 100.0 37 ..................................... GCACCGAAGCCGACACGACTGAAGGAGCTGGCCGGGA 13535 37 100.0 36 ..................................... GCGCACCGTAGAACGGATCCCGGCCAGAATGCGGTT 13462 37 100.0 39 ..................................... ACACGGCGAAATCATCCAGATGGATGTAGGCGTCTGACT 13386 37 100.0 38 ..................................... AGACGGGTAGATTGGTGAGCAGCCAGACGGTCACGTCC 13311 37 100.0 38 ..................................... CGGATTGTCGATTAGCAGGAAGGAGGTTTCCATGAACA 13236 37 100.0 37 ..................................... TGGCGCAGATGTTCGACGTGTCCACGGACTATCTGCT 13162 37 100.0 35 ..................................... TGGCCCGACGGGTGGCTGGCCCGGGGCTGGCCGTG 13090 37 100.0 38 ..................................... AGGTCTCGGCATCGCCGAATTCATCCAGGCCCAGCTCA 13015 37 100.0 37 ..................................... TTCGGATCTCAGCGGTGACAGCGGCGTTGACGCGGGG 12941 37 100.0 36 ..................................... AGAACCAGTTGGCTGCACTGATCACCATGTCCACCA 12868 37 100.0 36 ..................................... TACCACCGGCGACGTACTGGCCGGGTTGGTGGATTG 12795 37 100.0 36 ..................................... CCCGTCCGTTCCTGCGGCCGGCAGCTGATGAAAAGC 12722 37 100.0 35 ..................................... TCGTGCTGGCCGTGGCCGCCGTCCGAGGCTGGCTG 12650 37 100.0 35 ..................................... GCTCTAGACCGTCCAGCTGGGCATCCCGCACCTTC 12578 37 100.0 35 ..................................... TACCACCGGCGACGTACTGGCCGGGTTGGTGGATT 12506 37 100.0 36 ..................................... ATTCGGCCAGGATTCCCCAATCTTTTCCGTGTCTGG 12433 37 100.0 37 ..................................... GCAGGTGTTGGTCGCCGAGTATGAGGACGATTTGGCA 12359 37 100.0 37 ..................................... AGTTCGGCGACCACCCGATAGGCGCCGTCAGTCAGCG 12285 37 100.0 38 ..................................... TTCAGGAGTTTTCCGCCGTTGTTGCCTCCATCTCCGAG 12210 37 100.0 36 ..................................... AAGGGGACGAAGGGTAGGTGTCGAGGCGGTCATAGT 12137 37 100.0 36 ..................................... CGGCGCCACTTTTTATCTGCAGGTGCGTGGTGGCAA 12064 37 100.0 40 ..................................... GAGTTGCCGAGTGAGGCGGGGCCAGCGGCCGCCTGGGAAG 11987 37 100.0 34 ..................................... ATGACAATCACGATATTTCCACAGGTTCATCCGG 11916 37 100.0 37 ..................................... AGGAGGAAGAGGCGGATCCTTACGAGGCATTCTTGGG 11842 37 100.0 38 ..................................... ACGGCGCTGGAGATTCAGCTGGATCTGGGAAAGCCTGG 11767 37 100.0 36 ..................................... AGAATAGCGGCGAACGATGCAGTCCGGCCACATGTG 11694 37 100.0 39 ..................................... AGGGCCGCATCCAGCACGCCTTCATCGGCGGCCGCCGCG 11618 37 100.0 37 ..................................... ATCAGCTCGGCGTAGTCGATGCCGAGCTGGGCGAGCG 11544 37 100.0 40 ..................................... TGACCGGGACCAACGGGGGGTATGGCGTCACCTGGCCGCA 11467 37 100.0 36 ..................................... AGGCGGAGACGTTCACGCAGAAGCTGACGGCCATGG 11394 37 100.0 36 ..................................... TATCGATCGGGCCCGCTGCGGCGCAGGCTGCCGGCG 11321 37 100.0 37 ..................................... TGGTATGCGGGTGGTCGGTTGGTTGCTATTCGCTACG 11247 37 100.0 36 ..................................... ACACATGGGATCACAAACCGAAGTTCGAAGTGGTGT 11174 37 100.0 37 ..................................... CTTCTATCGCGGCCATCAGACGATCAGGAGATTGGTG 11100 37 100.0 36 ..................................... GGCCATGATCGCCGTCACCCGTTCCGATCTGATGGA 11027 37 100.0 36 ..................................... AGGCCTGGAGCACGGCCATCAGTTTCTATCAGGAGT 10954 37 100.0 36 ..................................... AGCCGTAGACCTGTCTCAGGTCGTACACTTTGTTCT 10881 37 100.0 39 ..................................... ATGTTTCCGACTTTTCCGCCGCTCGGCTGGGGCCAGCCA 10805 37 100.0 36 ..................................... ACGCCATCGATTCCTCCAGCAACCCTGGGGCGGTGG 10732 37 100.0 36 ..................................... CCCACCCGCTCCACCGAACGAACCCGGGCGGGAGGG 10659 37 100.0 37 ..................................... CTTCCTCGGCTCCGGCACCACCCTCGTCGCCTGCGAG 10585 37 100.0 37 ..................................... CGATACACCTACGCCTCTTCCCGCATCCGCTCCAGGG 10511 37 100.0 38 ..................................... GGCCGACACGGATGAGATTCCTGCGGAGCTCGACCCGC 10436 37 100.0 38 ..................................... GGCTGATCCCCCAGTCCCAGGAGGCAGCGGACCTCATG 10361 37 100.0 38 ..................................... AGATTGAGCGTGAACAGGCAGGTGTGCATTTCAGCGCC 10286 37 100.0 36 ..................................... CGGCGCTGGAGAAGGAGCATAGGAAATGAGCAGCAA 10213 37 100.0 37 ..................................... GCTTCAGCCTGGACACGGCCCGGGCTGCGGGCGGCGG 10139 37 100.0 39 ..................................... TTGAGCAATTCCAACGCGACATGATCGTCATTCTCATAG 10063 37 100.0 37 ..................................... AGGCAGAGCCAGGCCAGGAGGTCACAATGGAAGCGGA 9989 37 100.0 38 ..................................... AGGAGTTGCGGGCCTCGAACTCGTTCTGGCAGGCGCCG 9914 37 100.0 36 ..................................... GTGACAGGATCACGATCAGACACGAACATGGCCAAC 9841 37 100.0 37 ..................................... AGGCAACCACGAGTCAGGATTTTCCCCAGCCGGCAGG 9767 37 100.0 38 ..................................... ATCCTCGGCGTCCAGCCGCAGGTCGGCCATGGCCGCGG 9692 37 100.0 37 ..................................... AGGCCATACATCCTTTATTTCCACGCCAACACGGCCA 9618 37 100.0 36 ..................................... AGGATACGGATAGCCAGGAACAATATGGGGTCTGGA 9545 37 100.0 38 ..................................... AGCAGCAGCACCGGCACCTGCCCGGCCAGGGTGGCTAC 9470 37 100.0 36 ..................................... ACAGGAGGATGACCTGATGCGCCATTGCACCGACCT 9397 37 100.0 37 ..................................... GAGTTTCGGCGATCACGGCTACATCCACGGCACTTTC 9323 37 100.0 37 ..................................... AGAATCCCTTCCGCTTCTGTAGGACGAGCTGCTTCGC 9249 37 100.0 41 ..................................... GAAAGACCCGGCCATAGGCGGCCAGCAGCAGGGGCGCGTCG 9171 37 100.0 37 ..................................... ACAGCGCTGACCCCGACTACCTGGCCCGCTGTGGCCG 9097 37 100.0 37 ..................................... GACACAGTGAAGGCAGTGGTCTCAGCTGATCCGAAGG 9023 37 100.0 37 ..................................... TGGAGCAACTCGCGGTCCGTGTACTCCAGGCCGCCGG 8949 37 100.0 36 ..................................... AGCGTCCAGACTGGTCCTGCCGCGCGCGCTCGAACG 8876 37 100.0 37 ..................................... TGGAGGCCATCCGGCTCCTGATTCCCCGGATTGTGTG 8802 37 100.0 36 ..................................... ACCTTTACGCCGACCTTGGTGCCAGCCCAGGAAGTG 8729 37 100.0 35 ..................................... TTGCGATTCTTTATCTGTATGACCCGGTGATGGAG 8657 37 100.0 39 ..................................... GCTCCTGTTCAATCCGGGCCTGGCGCAGTTCCCGCCGGG 8581 37 100.0 37 ..................................... TGGTGGATCTGCCTGCCGCTGAACTTGCGGAACGCAG 8507 37 100.0 36 ..................................... TGGAAGAAGCAGGGGCCATGGCGGGCGGCCAGCCGC 8434 37 100.0 37 ..................................... TTAACCGAAATCGTCAGAACGGCGTGGAACGATATTG 8360 37 100.0 37 ..................................... ACTGTATCGCCGACTATGGAAAGTGGTGTACTGGGCC 8286 37 100.0 37 ..................................... TATGGGGCTGATATACTAAGCGACTCCTACATCAACG 8212 37 100.0 35 ..................................... TGGATTCCGTTCGCTGCATCCCACAGGTTCCACAG 8140 37 100.0 37 ..................................... AAAAATCTGAGCTGACTGCGGTACCGCTCGCAGTCCT 8066 37 100.0 39 ..................................... AGCAAATTGTCGGCCGCTGCCCCGATCCGAAACTTCGGG 7990 37 100.0 37 ..................................... ACACCCAGGGCTTCGGACGCCCTGGGGGGGCGAATTT 7916 37 100.0 37 ..................................... TTTTAGAACTCTCGTTCCCGCTCCAGGCGGGCATTGA 7842 37 100.0 37 ..................................... TTCCATCCGGATGTATTCGTCCAGCTGGGGTTTCAAG 7768 37 100.0 36 ..................................... CGGCGACGTGGCAACGGTGCAACGGGGGCAGCTGAA 7695 37 100.0 37 ..................................... GCCAGCACAAAATCGCAGTCGTGGTAGGCGCTGTTCA 7621 37 100.0 37 ..................................... CTCCGCAGGAGCGACAGGAACGCTTACTGGATAAGGT 7547 37 100.0 38 ..................................... ATATTGATTGTCATAGGCGCCATTGCAGCGCTGGCGTG 7472 37 100.0 36 ..................................... ACCCCTCTGCGCCGTCCTAATTGATCCTCAGGAGGA 7399 37 100.0 37 ..................................... CCTGAACAACCTCCTGGAACTTGGACTTCAGCCCCTG 7325 37 100.0 36 ..................................... ATACACGGGATGGCCCAGGCCGGGAGTCCAAATGTT 7252 37 100.0 36 ..................................... TGTGGAGCTTGCGCGCCGGCATGAACATCTACGTGC 7179 37 100.0 38 ..................................... GGCTGGCCAAAATATAGTAGGTCCCCGGCTGCAGCCAG 7104 37 100.0 37 ..................................... GGCGTCGCCGGCCAGGGCCTCGAATACATCTTCCTGC 7030 37 100.0 37 ..................................... GGCAGCGACGCCAAGACTGGGCCTCTATCCGACCTCT 6956 37 100.0 38 ..................................... AGATGATGGCAAACTTGGACGCTCTCCGAGGGCTTTTG 6881 37 100.0 38 ..................................... AGGTGTGCGGCTTCGCGGGGGTGCGGGCGGTGGCGGGG 6806 37 100.0 37 ..................................... CCTGGATGAAGCGCGCTTCCGGGGCCACCAGGGCATC 6732 37 100.0 36 ..................................... TGAGCTTCCGGAGGGGACCATCTGGGTGGATGCGCC 6659 37 100.0 36 ..................................... ATGGCCCTCTTCATCAGCGGCCAGCCACCGGGCCAT 6586 37 100.0 36 ..................................... ACGTTGACGTCCACCCGCTGCCCGGCCAACCCGGGC 6513 37 100.0 39 ..................................... ATGGCACCAGCCGGTGCGCCCGTCCGGCAGCTCTACCTG 6437 37 100.0 36 ..................................... TTGAGTTCGGGCGCCTCCGCATCGTAGATGAGATGC 6364 37 100.0 37 ..................................... CATCTACAACGACCTGGACGTGGAGAGCGTGGCCTAC 6290 37 100.0 36 ..................................... GCATGGGCAAGGGCGACGTTCAGGTGCTGGGGCCGG 6217 37 100.0 36 ..................................... GTTCCATAGGTACGTCCTGGGAAAGCTGGAGCACCG 6144 37 100.0 35 ..................................... GCCCGTAGGTAGTTGTCCCGGGCGCTGCGGCTCAG 6072 37 100.0 36 ..................................... AACACCGTCAGGGCCTGCTCCACGCTTTCGCTGATG 5999 37 100.0 39 ..................................... GCAGGCTACCCGGACCTGCTTCCAGCTGCACCACGCCGT 5923 37 100.0 35 ..................................... TGGAGGTGCTGCGATGGATAATATAGATGAAATGG 5851 37 100.0 36 ..................................... AGATGGTTGCGATAGGTTGCTTTCTCGTTCACGGTT 5778 37 100.0 35 ..................................... TTCCCGCCACATTCCGGGCAGGGGCCGGATGCGAG 5706 37 100.0 36 ..................................... AGCAAATCCCGCAGCTCCAGAATCCCGCTCACAATT 5633 37 100.0 36 ..................................... CCCATACCCGGAAGGAGACCGCCCGATCCTCGAACC 5560 37 100.0 37 ..................................... GGCCGCTCAGAACGCAATCCGTCGCGCTCTGCAACTG 5486 37 100.0 35 ..................................... AAGACCAAAAGGAGGCAATATGCACATCAAATCCA 5414 37 100.0 35 ..................................... GCTGGCCCGGCGGGTTGTGGGGCTTATCACGTCCT 5342 37 100.0 36 ..................................... ACAAATCGAGCAGGAAATGCCATCGAAATACCAGCC 5269 37 100.0 36 ..................................... ACGTCAGCTCGGTGTAGGCGAAACCCTCCGAGACCG 5196 37 100.0 38 ..................................... AGGGCCTGGCCGCGCCGGAGTCCAGCACCAGGGCCCGG 5121 37 100.0 37 ..................................... GCAGCCCAAAGGGCCGCTCTCCAAAGCTCATTCTCTA 5047 37 100.0 36 ..................................... AAATTTCACCAATTTCGGGCGCGTGTTGCGTCCCCC 4974 37 100.0 36 ..................................... AGGTGAAGATGGCCAGCCGGTCGTTCATGGGCAGCT 4901 37 100.0 36 ..................................... ATGGCAGTTGCGCTTTCGACGTTGACGGCCCGCCTG 4828 37 100.0 37 ..................................... ACTACCTCATGCTCCAGGCCTGGCCCGGCCCGCAGGT 4754 37 100.0 39 ..................................... TGCCAGGTGAAAGAGCAGGGCCGACCGCTGTCGTCCGTT 4678 37 100.0 37 ..................................... TACAACAACTCTCTGACCGAAAAATCATCTCCGTTGA 4604 37 100.0 38 ..................................... AGGTGATGGCGGCCCTGTTGGCCGGGCAGTCGGTTTCG 4529 37 100.0 40 ..................................... TGAAGCAACTGGGGCCGCTGCTTCGCCAGTACAACGGCGC 4452 37 100.0 36 ..................................... TTCAGCGCCTGCACCTCCCGCCGGTAGGCCTGCAGC 4379 37 100.0 37 ..................................... GTCCAGACGGTGCGCATTGCCCGGGCCGGATCCGCGG 4305 37 100.0 36 ..................................... TCTGTCCACAACAGGGCGTTGACCAGCACCTGGTAA 4232 37 100.0 38 ..................................... ACGGTCACGTCGCTACTGTCCACTGCGACAGCGATACC 4157 37 100.0 36 ..................................... TGCAGAGCACCTGGACTACAGCCTGGGAGGCTGTGG 4084 37 100.0 37 ..................................... TTGGGCATTGTAAAGGGTTATAAAGCCGCCGGAGCTA 4010 37 100.0 36 ..................................... AGCAGGTAGGCCACGATGGAATTGGCCGCGGAGCCC 3937 37 100.0 35 ..................................... TTTGGCCAGCCCCAGGAGGCCCTGGATGCCGGGCA 3865 37 100.0 37 ..................................... CAGCGGCTTTCCAGCCAGGTTTCCTTCCGGGGCATGG 3791 37 100.0 35 ..................................... CCGACCGGCGTTGCAACAGCTGCACTGGCTGGGCA 3719 37 100.0 38 ..................................... ATGCGGGCGTACTACTGGGCCGACCGCCTGGCAACTGT 3644 37 100.0 35 ..................................... AGCCACTCCTTAAATCCGTTAATGCGCTCCCGAAC 3572 37 100.0 36 ..................................... TCCGCGCCGATGAAGTGGGCCTGCGCACGGTCTACC 3499 37 100.0 37 ..................................... AGCCCAGGGCCGACTCCAGGGCCTGAACGCGGCGCAG 3425 37 100.0 37 ..................................... TGCAACCACTTCACCTGGCCGTCAAAGGTGAAGCCGC 3351 37 100.0 36 ..................................... TCATGGGATGAGGCCAAAACCGCGCCTGCCGACATG 3278 37 100.0 36 ..................................... TCAGTCCGAAGACGGTTGGGGCGTTCACCGACATCG 3205 37 100.0 37 ..................................... ATGCATAGCCTGCTGCCGTGAGCCATGCTGTCATGTC 3131 37 100.0 36 ..................................... TGGAGACGACCGAGAGTCTTCTGCAGGAGGCCCGGC 3058 37 100.0 36 ..................................... ACAGATCCAAATGCCAGTCAGTTGCAGGCAATGCGG 2985 37 100.0 38 ..................................... AGGCAGGCAGCCACCACCATCGCCGCCGCCACCATCCG 2910 37 100.0 36 ..................................... ACGGAGCAGCCAGTGGCTTGGTTGATATGCTGGAGG 2837 37 100.0 41 ..................................... TCCATGTCCAGTGCATGTGTTGGAAGGAGGCGGTGGTCGGT 2759 37 100.0 39 ..................................... ATCCAAAAGTCAAGACAGTTTCACACGGCCAGGTAGAAG 2683 37 100.0 37 ..................................... AGGGGCTGTGCCCAGCGCCAGGGGGTGGCCGCCAGGG 2609 37 100.0 37 ..................................... GGGGCCGTGAGCAGTGGGCCACCAACGGCCTGCTCAG 2535 37 100.0 38 ..................................... ACTTGACCACGGTCTCCAAAATGTGGGGACGCCTGGTG 2460 37 100.0 37 ..................................... TGGAAGACCTGGGCGTGGACACAGAGACGGCCCTGGA 2386 37 100.0 38 ..................................... ACGAGCTGGACGTCATTGCCCAGGCCGGGCTGGCCGGG 2311 37 100.0 35 ..................................... AGCCGGTCCTGCTGCAGGGTCTGCACCACCGGCAA 2239 37 100.0 34 ..................................... GCATTCGCAGCTTTCGGCCGCGGCCATGATCCAA 2168 37 100.0 37 ..................................... AGGCTCTCCGCCAGGGCCTCCCGCTGGGCGGCGCTGA 2094 37 100.0 36 ..................................... ATGTCCGCACAGTGGGCGGCCGTGAGGACCAGGCGA 2021 37 100.0 37 ..................................... GCCTTCACCGGCGCCTCTTCCGGCCACCGGAAGAGCA 1947 37 100.0 36 ..................................... CTTACAGATGCATTGCGGTATTTGGGGCTGTGGGGC 1874 37 100.0 37 ..................................... ATGGCAGTTGCGCTTTCGACGTTGACGGCCCGCCTGC 1800 37 100.0 36 ..................................... CGACGGCACCTGGGGCTTTTTCGACCAGGAGCCGTG 1727 37 100.0 37 ..................................... TCGATGCTATGGGGCTCGATGGCCAGCCAGCGCTGGG 1653 37 100.0 37 ..................................... GCTTCAGCCTGGACACGGCCCGGGCTGCGGGCGGCGA 1579 37 100.0 37 ..................................... ACGTGGACATCGTCTGCGGAGGGACCATCGATGAACG 1505 37 100.0 37 ..................................... AGTTGCGCGTCCTGCCCGGGGCCACGGTGTACAGCGG 1431 37 100.0 38 ..................................... AGGAGCAACACCGGCACCTGCCCGGTGAACGTCCGGGC 1356 37 100.0 35 ..................................... AGTAGAAGGCTGCCGGATGGTAGCGCTTCAGGTAG 1284 37 100.0 36 ..................................... CCTGGCGCGTCTTGTCCACCGTTTCGTCTCCGATGG 1211 37 100.0 36 ..................................... GAACTCAAGGGCTCCTACAAGCTGCCCTTCGCGGAG 1138 37 100.0 36 ..................................... CTGACAGCTGGGCGACCGGACCGGGCATTCGGATCG 1065 37 100.0 35 ..................................... TGCTGGACGAATTTCTGACGGCCAAGCGGGCCGCC 993 37 100.0 38 ..................................... ACGGCCATCGTCATGTCCCGGGCCAACGCGGACCTGCG 918 37 100.0 36 ..................................... AGGAACAGGGCGAAGACGAAGAGCCGGAACGCTGGG 845 37 100.0 38 ..................................... CTGAGTGAGCAGCGCATCTGCCAGCCCTACGGGGACGA 770 37 100.0 40 ..................................... ATGACCTCCATCGTCGCCGAACTCATCCAGCGCGGCTGGA 693 37 100.0 37 ..................................... AGTGGGTGACGGGCCAGTTCGTGCGGCCGTTGTTGAC 619 37 100.0 39 ..................................... AGGGTCTCGCTCACCGTGCCCCAGGCCGCGCGCATGCGG 543 37 100.0 40 ..................................... CAACCATATGATTGGAGCGGCTGGCATATTCAGCCGTGAG 466 37 100.0 37 ..................................... GGCCACGCTCTCTGGCCAGGGCCTTGCCGACGGCACG 392 37 100.0 36 ..................................... AGTTGAACACTTGGCGCAGGCGCCGGAAACAGGTGG 319 37 100.0 36 ..................................... ACATCGGGTGTGCCGACAGGCTCTCGTAATCCAGCT 246 37 100.0 38 ..................................... AGCGTTGAGCTGCGTCCCCGCGGCGACAGCAGCGGCTC 171 37 100.0 37 ..................................... ACGCCTGAGCAGCAAGCGTCAGGCACGGCGTCTGCTG 97 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 250 37 100.0 37 GTTGAAGCAGACGATCCAACAGAGTGGATACTGAAAG # Left flank : ATCATGGAGCAACGCATGCCCGGCCCACCGCGGTCGGTGCGGCAGTGTGTGGATTGTGAATTTCGGCGGTTCTGCAACGATACGATCTGATGGTCATGTTGCTCTTGGTCGACGCCCATACAGTGTGCCCTGGTGTTGGCAGCCCCATCGCAGCCCAGGGGCATGGGGGAGTGCATCATGGGCGCTCGCGGTAGCGGCCTGAAGCGCATGAGAACACGCCCCGTCGCAAACGGTCTGCGTCCATGGCTTCTTAAATGCGGGGGAGGGTCGCCACTGGGCCGCGATCTGGAACACATGTACGATCCGCCTCTGGAGGGCCGCTTTCTGGGGTGTCGCAAAAGGAGGCCGGAATGGGGCAAAAAGCAAATTGCGAAAAAATGGACTGAGCGGATAAGATGCAACGAAATCGGCCGTTGGCGGGAGCCGTTGAGAGCCTCTACATGCGTTTTTTCTTAAGGATGAGGGTTGCAAAGAAGGTTTGGTGTGGTGTGCGTGGGCGG # Right flank : GCTGTATTGGCACGACGGATCAACGACGCTGGCCAGGAGTTGAAGCAGACGATCCAACAGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGCAGACGATCCAACAGAGTGGATACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 4570-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIGC02000036.1 Litorilinea aerophila strain ATCC BAA-2444 NODE_36_length_56975_cov_45.064769, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 4569 34 100.0 34 .................................. CGCCGGGTCCCAGTTGGCCAGGGTGTCCCAGTCC 4501 34 100.0 34 .................................. CCGCTTGTCGGAAACCTGTTGCTATCGGCGGGCA 4433 34 100.0 35 .................................. CTACGTGAGATTGTGGACCCCGGCCACCATTTCGA 4364 34 100.0 34 .................................. TTAGGCACCGTGTCCGAAATCCGGGACAACGTGA 4296 34 100.0 36 .................................. ATCCTCCAAACCTCCACCAGAGCACTGCGAACTCCA 4226 34 100.0 34 .................................. GCCTCTGGTAGCCCCCCCCTCCCCCCGACGTGAA 4158 34 100.0 34 .................................. TGCTCGACGACGTGGAGGACGACGAAAACACGAA 4090 34 100.0 36 .................................. GTGGGATGTGGCTCGAGCCATCCGGCGGGCAGGGGT 4020 34 100.0 34 .................................. ATTGAAATTGGTGGCTGGGAACACGGAGATTGAA 3952 34 100.0 34 .................................. TTCCAGGAGGAGGGCGATGGCAACGAGGGCGTGG 3884 34 100.0 34 .................................. GATGGGAATCGGATCAGCGATAGTGGGAACGGGC 3816 34 100.0 33 .................................. GCCTCTGGTAGCCCCCCCCTCCCCCCGACGTGA 3749 34 100.0 35 .................................. TTCTGGGCGCTGCGGCGGGGGCTGATTGAGGTCCC 3680 34 100.0 34 .................................. TGCTCTTTGATGCCTGGCATATCATCCGCCGGTT 3612 34 100.0 36 .................................. CCAGGTACACGCCGTAGTTAATGATGACGCCGTGGC 3542 34 100.0 35 .................................. ACCCGCAAATTGATCGCCAGCCCCAGGGAATATGT 3473 34 100.0 35 .................................. GCTGACGTGGTAGACGGAGAGCTGGTGGCCGTGGA 3404 34 100.0 33 .................................. GCATCTACGGCCGCAGCCTGGGCGACGCCGGGG 3337 34 100.0 34 .................................. GATGACCGTAGAGATTTTGGCCTTGACCGGTGGG 3269 34 100.0 33 .................................. TGCCGGTACGCCGACCTGAGTCGGCACCTGGAA 3202 34 100.0 34 .................................. AGTCCGGAGCACAACACCGCGGCCTGGCCGGTGG 3134 34 100.0 35 .................................. TGGCGCGATATCTCCACCACGTCCGCCGCGGTATA 3065 34 100.0 34 .................................. AGTGCGGAGCCGCCGTGGTCCGTTTTGCCGGTGT 2997 34 100.0 34 .................................. CCGCAAGGCGCAGCCATACGTTGAGGCAGTGGAG 2929 34 100.0 34 .................................. TGAGTGCCGTAAGTGAGTATGTGACGGCTCTGGG 2861 34 100.0 34 .................................. GGCTGGGTGGGTTAGCTGAGCAACGACAGCCGGT 2793 34 100.0 34 .................................. TCAATGACGGCGTTGGAGATTATGACAATCTCAT 2725 34 100.0 36 .................................. GGCTGGGTGGGTTAGCTGAGCAACGACAGCCGGTCA 2655 34 100.0 36 .................................. GCCCATCGGGAAGGGGCCCCGAAGTACCTCCTGGGC 2585 34 100.0 34 .................................. TCTGTGGGGAGTGTTGTCACATTTTCCGGCCCGG 2517 34 100.0 35 .................................. ATCCAGGAAGTCTTCATCCAGGCCCCCCCCCTTGC 2448 34 100.0 35 .................................. CGGCGGGACCGGAATTGATCCAGGGGCGACGGCCA 2379 34 100.0 34 .................................. TAGTTCGTTGTAGTTCATGGTCAGTCTATCCTAA 2311 34 100.0 34 .................................. ATCGTCGACAGGCGTGGCGTCCAGGATGTAGTTG 2243 34 100.0 35 .................................. CGGCATGGCGTAAATGAGGTGGCTGCCGCCACCAC 2174 34 100.0 33 .................................. AGCTCCACCGTGACCCGCTGCTGATAACCGACA 2107 34 100.0 34 .................................. ATCCAGGAAGTCTTCATCCAGGCCCCCCCCTTGC 2039 34 100.0 35 .................................. CGGCGGGACCGGAATTGATCCAGGGGCGACGGCCA 1970 34 100.0 34 .................................. TAGTTCGTTGTAGTTCATGGTCAGTCTATCCTAA 1902 34 100.0 34 .................................. ATCGTCGACAGGCGTGGCGTCCAGGATGTAGTTG 1834 34 100.0 35 .................................. CGGCATGGCGTAAATGAGGTGGCTGCCGCCACCAC 1765 34 100.0 33 .................................. AGCTCCACCGTGACCCGCTGCTGATAACCGACA 1698 34 100.0 32 .................................. ATCATCGACGCCAGCTACACCGTGCCCAATAC 1632 34 100.0 34 .................................. AGCGATGGCCTGTTTGACATGCTCCAGGATTGAA 1564 34 100.0 34 .................................. AAAGTGATCGAGCTCCCGTAATCGTAGTAGCCGA 1496 34 100.0 35 .................................. TGGAAAAATTGCCGTTGACTTTCCTGGGGCAGGTG 1427 34 100.0 33 .................................. CGGATAGTGACAGGGCCCCGGGGGCGGCACTTA 1360 34 100.0 35 .................................. ACCCAAAAACTCTTCGACCGCGACGCGGCCTTGGG 1291 34 100.0 34 .................................. ATCGTCGACAGGCGTGGCGTCCAGGATGTAGTTG 1223 34 100.0 35 .................................. CGGCATGGCGTAAATGAGGTGGCTGCCGCCACCAC 1154 34 100.0 32 .................................. ATCATCGACGCCAGCTACACCGTGCCCAATAC 1088 34 100.0 34 .................................. AGCGATGGCCTGTTTGACATGCTCCAGGATTGAA 1020 34 100.0 34 .................................. AAAGTGATCGAGCTCCCGTAATCGTAGTAGCCGA 952 34 100.0 35 .................................. TGGAAAAATTGCCGTTGACTTTCCTGGGGCAGGTG 883 34 100.0 35 .................................. ACCCAAAAACTCTTCGACCGCGACGCGGCCTTGGG 814 34 100.0 36 .................................. CTCTCCTTCGCCGGCCTGCGTCTTGCGCATCCAGGC 744 34 100.0 36 .................................. ACAACCGTGCTCCAGAACTGGCCAATCTGGTCGGCC 674 34 100.0 36 .................................. ACAACCGTGCTCCAGAACTGGCCAATCTGGTCGGCC 604 34 100.0 36 .................................. ACAACCGTGCTCCAGAACTGGCCAATCTGGTCGGCC 534 34 100.0 34 .................................. ACGCCGTATCCGCGCCACCTGGCGGCCCGGCGCC 466 34 100.0 34 .................................. TGACCAAGTGGTGTCGGCGTGGCGAAACCAGAAC 398 34 100.0 33 .................................. ATCGACGGCGTGCGCATCGGCCACCTGCACTGC 331 34 100.0 34 .................................. AATGCGAATGGTGTGCTCGCCAGCAGAGACTTTG 263 34 100.0 33 .................................. ACGTGAAACATCGGCGATCTGAAGGTAGTCCAT 196 34 100.0 35 .................................. ACCCACGGCATGCCGTCCAGGCGCTGCGAGAACCG 127 34 100.0 36 .................................. AGGGACGTGAGGAGATGGCGACTGGCGCTGGACCAG 57 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ==================================== ================== 67 34 100.0 34 GTCGCTCCCCCTCGCGGGGGGCGTGGATTGAAAC # Left flank : CGTTCTTCTGGAATTAGGCACGTAGCAGGAGGAAGGCGCGATGATGGTCTTGATTACCTACGATGTGAATACGACAAGCGAAGCCGGCAAGCGGCGTCTGCGTTTGGTCGCAAAGCAATGTCGGAATTTTGGGCAACGGGTCCAGAATTCGGTCTTCGAATGCCTGGTCGATGCGGCCCAGATGAAACAGTTGAAGCATCGCCTAGTTGGGTTGATAGATCCCGAACGGGACAGTCTGCGTTTCTACTATCTCGGCAACGAGTGGCGAAACCGGGTGGAGCATGTGGGCACAAAGGCAAGCATTGATTTGGAAGGGCCGCTGATTGCCTGAAGTGGTGCAGGTGCGAACCGGAAGTGACCATGCCTTCCGCCAGGGGTTCGCAGCCGTTTTGCTTCCACAACGAGCGGTTGTATGACTGTTGGAGGATGTTATGGCAAGTGATTGAGTCTCGATGGGCAATATCTAGGGTGTTGGTGAGCTTTGGCCCCTAGATATTGCG # Right flank : CATCGATCAGCTCCTGGTCGGGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCCTCGCGGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.40,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 23991-31241 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIGC02000035.1 Litorilinea aerophila strain ATCC BAA-2444 NODE_35_length_59776_cov_47.449815, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 23991 37 100.0 39 ..................................... ACCGCATGGCCAGGTCTGATATAGACAGGGACCACAAGC 24067 37 100.0 41 ..................................... GAACATACACACCCCAGGCCCGTGCAAGGGGTGGGAAGCGG 24145 37 100.0 40 ..................................... CGATATGAGGGGTTGAATCACAGTAAAATCACTGTGTTCC 24222 37 100.0 41 ..................................... GCTGTACCAGAATACCAGTGATAGCAGACTGGAGCAAGCAA 24300 37 100.0 38 ..................................... TACTACGTGGTACTGTCTCACGTTGTTCCTGCTCACGT 24375 37 100.0 38 ..................................... GTTGGGTGGTGGTCTGCATGGACCCTACCACAAACTCA 24450 37 100.0 36 ..................................... AATATACGCTACCCTGTTTCGTTTATTGCGTCGTGC 24523 37 100.0 42 ..................................... ATACAAAATTGTTGGACGCATTTTGCGGATTGTCGATGGTCC 24602 37 100.0 40 ..................................... ACAGGAGAATTTGCAGGAACAAGATACACAACGTAAGACA 24679 37 100.0 39 ..................................... ATTGACGTACCGAGCTTATCTTGGCCGACAGGTCGTTAA 24755 37 100.0 40 ..................................... ATATGGTTACATACGGGGAGGTAAGTTAACTATGCCCATC 24832 37 100.0 40 ..................................... ATTGCAATGGTTCGTGTAATCTTCACCGCGGGCAGTGACG 24909 37 100.0 42 ..................................... CCAGGCTGGAGAATAGAAATATTTGCCGTAGTAGTCATCTAA 24988 37 100.0 41 ..................................... CCTTTAGCGCACTTTCCAGTCTGCTATCACTGACGTTCTGG 25066 37 100.0 41 ..................................... GATATATTTTCCCTTTCTATATACATGTATGTACAGCTAAA 25144 37 100.0 38 ..................................... CTTAACGTACCCAACTTCACGGGCTTCCCGCCATTGAC 25219 37 100.0 40 ..................................... CCGGTCGCCCTGACTTCCGAACGATTACGGGGCTTCTTGG 25296 37 100.0 40 ..................................... CCGATAGCGTGGGGATTGTTGAGCTGCGACTGTCTACTTA 25373 37 100.0 39 ..................................... CAGATATGTTGTTATCTGGGTGTACTAACTCGGTTGATA 25449 37 100.0 38 ..................................... ACGTGCGTACGTGTGTGTATGCGCACACGGAAAAGACC 25524 37 100.0 41 ..................................... GCTTCTGTGAAGCCGTTGAACGTGGTGAATCGGCTCGATAG 25602 37 100.0 40 ..................................... GGAGCTACCATGAAACCCCATGGTAGCTATTTGTATGGTA 25679 37 100.0 40 ..................................... GATACGTTTAGCTCCTAGTACGACTACAGCTGGATTGTCT 25756 37 100.0 35 ..................................... GTAAAAACATGCCCCATTTGCGGGCAGGGTATAAC 25828 37 100.0 36 ..................................... CCACATACGGGCGATAGTATATAGGGCCAAAAATTC 25901 37 100.0 37 ..................................... CCAGGTACCGCTACGTTGAGTGTACGGGTACTGCACT 25975 37 100.0 39 ..................................... AAGTATTCTTGAGAACAGCATCGTATCAAATACTTTACC 26051 37 100.0 41 ..................................... TTCCTTATGCTGTTGTACGGCAGACGATATATATGATATCG 26129 37 100.0 37 ..................................... ATTCTGCTTTTCTTTCATACGGTAATGTTTCCAGGTG 26203 37 100.0 41 ..................................... TCTTGGTCGGTGTTGAGATTATGTGCCTGATAGGAGAGTAT 26281 37 100.0 42 ..................................... CAATCGTGATGATGTACCACAACGCCATGAAACACCACAAGA 26360 37 100.0 40 ..................................... CCAGAAGTTACAGAAGAAGAGAAAGGAAAGGAATTAAGCC 26437 37 100.0 38 ..................................... GGAACCAGTACCATGGAATCCACCAAACACACCGTGGG 26512 37 100.0 42 ..................................... AGTGCGCCGGCTGCGCAGGACCTGGAGGCCATGGCGGTCACG 26591 37 100.0 44 ..................................... GAAGCAGCCCAACGGGCCATCAACGATTTCGTCACTAGAAATAA 26672 37 100.0 39 ..................................... TGGAGGTGGGTGCCAGCGGGTTGAGATAGAAGAGCGCCT 26748 37 100.0 44 ..................................... CCGCAGGAGGGGCAGGTCATCAGGCCGCCCTCCGCAGCCGGCGG 26829 37 100.0 38 ..................................... GGTACACCTAGTATATCATCGGCAACGCTCTCAAGTTC 26904 37 100.0 43 ..................................... GCATTCGGCAGAATACCTGAATTGCGTACCACACCGACGGAAT 26984 37 100.0 41 ..................................... GCATCAGTACGATATTACCCCGTCCTTTCTTCTCCTGGTGC 27062 37 100.0 41 ..................................... CCTGGACCCGGAAACCCTCTGGCCCCAGCCAGAGATCAGAT 27140 37 100.0 38 ..................................... CGGTTTAGGCGGGCGAGAGCCGGCTGGATTGTTTACAT 27215 37 100.0 41 ..................................... GCAATTCGCGCAGTGAGCATCCGTTAGGCGCACGGCTAAGT 27293 37 100.0 42 ..................................... CGAGACCACTTTTCCACCCAATCCAGGGCAGACCTTTGATAT 27372 37 100.0 43 ..................................... TCTGTAAATCGGATGGCGAGGTGAACAGATCCAGCTGGGTGAT 27452 37 100.0 37 ..................................... ATTCTGGTAGGCATCGCTCGGGGGCAGATTTTCCGCC 27526 37 100.0 37 ..................................... AACAAGTACTCACTGGCATACGGTGTGTCGGTGATTT 27600 37 100.0 41 ..................................... CCGTTGGTCGAAGAACCGAGCAAGGTAGTTAGTAGACGCCA 27678 37 100.0 38 ..................................... CTGGTATTAGCTACCAGAAGTTTGGGTGATATTATAAA 27753 37 100.0 40 ..................................... CAGAACTGAAGCGCATGTTGGATGCGCCGGATGTGTTACG 27830 37 100.0 40 ..................................... GTCAAGAGTGGGTCGATATGTACGTCGGTCTTCGCTCTAA 27907 37 100.0 40 ..................................... TCTTCTGGTAGTTCCAGATTCTTTGGGAAGTACACAATAT 27984 37 100.0 36 ..................................... TGACCTTGCCGATTTCCATAATTGACCTCCTCAAAA 28057 37 100.0 41 ..................................... AGAATGGATGGACAAGACAAAGGTAGGTTCCTGTATGTCCA 28135 37 100.0 41 ..................................... CTATATTACCCGTGTACGCCGTGGATATTTCTTCCCCTACA 28213 37 100.0 40 ..................................... CTGCACAACTCGGCTATGGACTCCACCAGCGCCACAGTGC 28290 37 100.0 36 ..................................... CCTGTACGATTACATACATGTTGCCGCCCATGGAGA 28363 37 100.0 39 ..................................... CCAGGTGAGCCGTCCCTAATGGTGTTTCAATTTGGATGC 28439 37 100.0 39 ..................................... ACAGTGTTTGGGTGGGGGTACGCCTGCTGGGTGGGGGAC 28515 37 100.0 38 ..................................... GGCCCTGGCTGCCTGCTCCAACCGGCGCACCGGGATTG 28590 37 100.0 42 ..................................... TTACAGCTTTCTTCGTTGTGCGAGCCATTTTAGATCTCCTTT 28669 37 100.0 41 ..................................... TGTCATTGCGGCTGCGCAGATTGCAATGGCGACGGTGGTTG 28747 37 100.0 43 ..................................... CAAACACACTGACATTGTCGCCAAAGTACAACACGGCCTGGCC 28827 37 100.0 41 ..................................... CGCGGGGAATTTTTGTGTTGGAATGCGGACTGGAGGGACCA 28905 37 100.0 39 ..................................... GTTGGGTGGGCTTAATCGTAGTCTACGCTAACGCTATCT 28981 37 100.0 35 ..................................... ACAACTGCTGGGTTGTCTTTCAACCCGCCAACCCG 29053 37 100.0 36 ..................................... GCTGGTCCTCGAGCGGGTCGTTCGGGTCGACATACT 29126 37 100.0 40 ..................................... GGCCCGGGGTTTCTCGACGTAAGCCCCGTCAAGGACGCGG 29203 37 100.0 41 ..................................... GTACCGACCGTAGCACTCAATCCATGTCTCAATTACCTTCT 29281 37 100.0 39 ..................................... AGTGAGTATCTGGCTGGTGACCTTCTGGCCACACAGGTT 29357 37 100.0 36 ..................................... TCGACCGGCCTTGGTGGACCCACAGCCACGGAATTC 29430 37 100.0 42 ..................................... ATGGGTGATTGCACAGTGAGTAGCTGTATCCAGAAGCTTCAT 29509 37 100.0 40 ..................................... CTATAGCTAGGTTATCAACTAACTTACAATTATATTATAC 29586 37 100.0 43 ..................................... TAACCCGTAGGGACCAAAGCAAAACTACCAGCATGTTCATTTT 29666 37 100.0 41 ..................................... TCAGTAGAAGGCTGTGGAGCGTGGGCAGTTAAGTCTGATGC 29744 37 100.0 39 ..................................... AACAAGACAAGGTAGCATATATTGTAAATATGTACGGGA 29820 37 100.0 43 ..................................... TCATGGGAGAAGACTCTGTGTGCAGCCGGATTCCCTTCGAGGG 29900 37 100.0 38 ..................................... GTAGTATGCTATAATGCTACATAGCAGCATAAGGATTT 29975 37 100.0 43 ..................................... ATGGAATACAGGTCTAGATCCTCCTCAAACCCCTCCTCTATCA 30055 37 100.0 44 ..................................... CCTATGTCAATACGACAGTATTGACGGGTACTATCCGTTCTACA 30136 37 100.0 42 ..................................... TCATTCTGGAAGTTGCGCCATGTGTCAATCATGATTTCGTAT 30215 37 100.0 42 ..................................... TCTGGATGGTAGCCAGATCCTGCTGCCCTGCCACCCATAAGG 30294 37 100.0 38 ..................................... GCTTGTCAGGTGGTGGGAACCCACAATACCCGCATAAC 30369 37 100.0 39 ..................................... TTTATGGGCTGTCCCCGGCTTGAAACTATGGATAACTGT 30445 37 100.0 39 ..................................... ATAGCTTGTTCAAGGATATCATCCTTGACGTTCTGGTAC 30521 37 100.0 39 ..................................... CGGGGGCTGCTGCATGCGGCAGTGCAGCAGTCCCTATTT 30597 37 100.0 39 ..................................... TCCTTTGGTTTCGTGGGCTGTTCAGTAGTCTGCTCAAGA 30673 37 100.0 44 ..................................... GTGGTCCACGGCATCGGCGCCAGCATCGGCGCCATCACGCGGCG 30754 37 100.0 40 ..................................... ATGGTCGGGCGGCAATTTACCGCTATAAATGTGTGCGTGT 30831 37 100.0 37 ..................................... AATACCGGGTCCCCCCAGTCGTCTGCGCCCCAACCAT 30905 37 100.0 39 ..................................... GTACTGCATCGGGCTGTACTTGTTGTGGTGTACGAACCC 30981 37 100.0 36 ..................................... CCGGCACCAATCCTCGAGCTCGTCGAGAGTGTCAAA 31054 37 100.0 42 ..................................... CTGCCCCCATACCTCTTGATGAAAGAGGTACGCCGGGTGCGT 31133 37 100.0 35 ..................................... GGCTCATTGTTGGTCAACAGGATGACGCCGGGATG 31205 37 89.2 0 ................................CCCC. | ========== ====== ====== ====== ===================================== ============================================ ================== 95 37 99.9 40 GTCTGAAACCACCTAATCCTCGGAAGGGGATTGAAAC # Left flank : TGGCCATGTTTGTGGTCATCAGCTACGACATTCCGGACAATCGACGGCGGCTGAAAGTGGCCCAGACCCTGCTGGACTTCGGCGGGGAGCGGGTGCAGCGCTCGGTCTTTGAGTGTTACATTACCGAACGGAACTATGAGCGGCTGCAGGCGCGGCTGCGGCGACACTTTGACGGGGAAGCGGACAGCATTCGTTTTTACATCCTCTGTGAAAATTGCCGGCCTCGGATGAACCTGTGGGGATTGGCCCACCCCATCGAAGAGCCGAGGCTTCGCATTATTTGAGGGCACGGGTGGGGCTCTGGCGATGGGTTTGCGAACACCCCCCTTCCAGAAGGCCCTGCAGACGCCCTGGCAGCGGGGGGTGTTCGCAAGGCGTGGGCGGGTGGGAGGCCCTGGGCCGAAGATTGGCAGGAATGAGGGAAATCAGGTATAATGGGGTTCAGCTAACGCAGGAAATTTGGCCCTGGGTGGGTCACGTGCCCTGAGGGGCGGTGAGGG # Right flank : CCCACAATCGTTTCCACGATCCGGATGAGTCCGCCGCGGATCTCGCGCGGCGACGGGCACTCCACGGGGAGAGGGAGCGAGCAGTCGCCTGAAGCTGGGAGGATCTGGCGCCGGGCTACGGCTTCCACGAGGCTGCCCAGGCGCGCGCTTTACCATCTATAAGGCCGCCCGGCAGGAGGCGCTGACACGGCTGCTGGCGTGGAACCATCAACAGTATGGGGGGGGGTGAAGGGGTTGCGTCAGAAGAATGCACGCCAGGGCGCGAGGACGGAAGCGCGTCCAGTAGAGAGGTATATTGTGCGCGCCTGGGGTGTGATACTGATTACCTGATCAAGAGCCATCGTAGGTCCAGTATGAAAACCGGACTTACGAAATCATGAACGCCACTTCGTAAGACAATCGGTATGCGCCATCGGGCGGATGGAATCGATGGCGTTGGATCTGAGCGGAAGGCAAGGGCCGCCTGATTTTCCTCAAAGCAGCCGCAGGCGACGCAGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAACCACCTAATCCTCGGAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 198364-197094 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIGC02000012.1 Litorilinea aerophila strain ATCC BAA-2444 NODE_12_length_198387_cov_46.327494, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ===================================== ================== 198363 34 100.0 35 .................................. ATCGATCAGCTCCTGGTCGGGCGGCAGCATGGCAC 198294 34 100.0 36 .................................. AGGGACGTGAGGAGATGGCGACTGGCGCTGGACCAG 198224 34 100.0 35 .................................. ATCGATCAGCTCCTGGTCGGGCGGCAGCATGGCAC 198155 34 100.0 33 .................................. TGTCCTGTCAACGCGTGCCGCGCAAATACCAAT 198088 34 100.0 37 .................................. ATTTCCGGGCCGGCTCAGTCCGGCCCCGGCCCCGGGC 198017 34 100.0 35 .................................. ACCGCCATCGCGCTGGACGACGACCATCGCGGCAT 197948 34 100.0 34 .................................. CAGGCCGCGGCGGCGTCCAAGACGCCCCATCCCG 197880 34 100.0 35 .................................. TCGATGTACAGATCCGCCTCGGAGCGGGCCACGAA 197811 34 100.0 34 .................................. ATCCGGAACATTCGGAACATGCGGAGCGCCGGAT 197743 34 100.0 34 .................................. ATGTCGATGATGTCGGTGGTCTGCGTGCCAGTCC 197675 34 100.0 35 .................................. ACCCTCACCGGGTGACGCTGGTGACGCTGGGGTGA 197606 34 100.0 35 .................................. ACATCCGGTTCGGCCCAGGTGTCTCGGACGGACGT 197537 34 100.0 35 .................................. ATGTTGATGGGGGGATTCCGCCGCACGTGGCGGCG 197468 34 100.0 34 .................................. AGTCCGGCCAGGTGCCAGGCAATGAGGATGCAGG 197400 34 100.0 35 .................................. ATGTTGATGGGGGGATTCCGCCGCACGTGGCGGCG 197331 33 97.1 34 ...............-.................. AGTCCGGCCAGGTGCCAGGCAATGAGGATGCAGG 197264 34 100.0 34 .................................. CGGGGTGAGACTGTACAGGCCGAGGCGATCCCAC 197196 34 100.0 35 .................................. AGTTTTTTCAGTACAAAAAAAAGCGCCCGGGCAGG 197127 34 94.1 0 ...............................C.T | ========== ====== ====== ====== ================================== ===================================== ================== 19 34 99.5 35 GTCGCTCCCCCTCGCGGGGGGCGTGGATTGAAAC # Left flank : AGATGGCGACTGGCGCTGGACCA # Right flank : GTCTGTAGTGCAGCTGGGTCGTTTATTCCAATACCTTGGAGAGCGGATCTCGCTGCGAGAGCGCTATTCCAGGCAGTACGCAGAAGCGGAAATTCGCGCGATACAAGAGGTCGGCTCATGGCTAAAATCGGAACTGGAGCAAGCGCGACAGACAGGGCCGTCAGCAGAGAACAGTTGATGAGGCAGGTGCGAGAGCTGCTTCGTGTTCTGCGCTCACAAAATTTGGAAATCACGGCAGCCTATTTGTATGGATCTTACGATTCTGGCACTGCCGGACCGGACAGTGACATTGATGTAGCTGTGATTTCACCAGATCTCACCGGGGATCGCTTACAGGACCGACTTCGTCTGACCTATGTGGCAACGCGCATCAATCCTCGCTTTGAAGTGATCGGCTTTCGCCCCGAGCAGTTCCGCGATGAACATCCGCTGGCCTGGGAGGTGAAGACCCGGGGCATTTTGGTCCAGTAACTTCGATTGCCTCCACCATCCCCGCGCGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCCTCGCGGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.40,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 54-2004 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIGC02000056.1 Litorilinea aerophila strain ATCC BAA-2444 NODE_56_length_11842_cov_47.817499, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 54 37 100.0 37 ..................................... ATGATTGCAGCAGACGCCGTGCCTGACGCTTGCTGCT 128 37 100.0 37 ..................................... TTGCGGGGGATGGTGAGCGGAGCTGGAGGGGGCGGGC 202 37 100.0 36 ..................................... CCAGCGTCCCGCTCACGCCGCGCCAGGCGAAGATGT 275 37 100.0 35 ..................................... ACGACATCGACTCGACCAGCAATCCCGGGGCGGCG 347 37 100.0 36 ..................................... ACGTCCCGGCCCACGTTGTGGGCCACATTCTGGGCC 420 37 100.0 36 ..................................... TGACCCGGCGCATCCGGTACGGTGCCCGGCATGAGC 493 37 100.0 36 ..................................... GCATTGTCGCGGAAGTGGACATCCTGGCCATGGTGA 566 37 100.0 38 ..................................... TGGTCGATACAGTCCAGCGCGAACATCCAGTCGTCAGC 641 37 100.0 36 ..................................... AGGCCCAGGCGCCACATCCGTTGCAGCGGTACAGCG 714 37 100.0 34 ..................................... GCGACCATGCGCCAGAGGCGCCAGAAGCGCCTGG 785 37 100.0 35 ..................................... ACACGGGCGGTAACAGTAGGGCCAGCCCAGAAGGA 857 37 100.0 37 ..................................... GGCAGAGTCCAGAGATTGTATGTCCTCTTCTCCGAGA 931 37 100.0 38 ..................................... AGCGCACGTTTGAAGCAACGGCCGACAGCACACGCTAT 1006 37 100.0 41 ..................................... CCATACAGCCGGCTGGTGCTCGCCGGCCGCTCGTACTGCAG 1084 37 100.0 36 ..................................... AGGCAGAGGCCACCAAGGCCCAGGCCCTGGCCCAGG 1157 37 100.0 37 ..................................... TCGTTGCCGTGATACTCCTCGTGGCAACGGGGGCACA 1231 37 100.0 37 ..................................... GTGATATCGATGCCGTCGCCGGCGGTGTATGTCACGC 1305 37 100.0 35 ..................................... TGCTGCTTTTGCTTCTGGATACCGGCATCCGCCAC 1377 37 100.0 36 ..................................... GCTGCACGGCCCGGGCCCGGGGACCATAGAGTGCCG 1450 37 100.0 37 ..................................... AGCCTGTAGCGCCGCCTCCACAACCTGGGGTACGCTC 1524 37 100.0 38 ..................................... AGGCGCAGGCCGGGCAGACGCGCAGCCGGACGACGAAC 1599 37 100.0 35 ..................................... AGCGGCAGTCGTCGCCATCTCGGATGACCACCACA 1671 37 100.0 35 ..................................... TGGCCCTGCGCGCCGGCCTGGGGAGCCCGCAGACG 1743 37 100.0 37 ..................................... TCACCCTCCTGGTCTAGTTTTGATAGCACGTGTTTTC 1817 37 100.0 36 ..................................... AGGTGTCGTCAGCAGAGCTGGTACCTGCACTCAAGC 1890 37 97.3 38 ....................................A TCCCCTGGTTGCGAGTCATGGTGGAGTCCACTGTTTTG 1965 37 75.7 0 ......A....T...T.....T....C.A.G...T.A | TT,C [1984,2000] ========== ====== ====== ====== ===================================== ========================================= ================== 27 37 99.0 37 GTTGAAGCAGACGATCCAACAGAGTGGATACTGAAAG # Left flank : AGTGGATACTGAAAGTCGTCCGCCAGCAAACGGTCGTGCTGGCGGATTAGCTCG # Right flank : ACAGGCTCTAGACTTGTTCATCCGCTCATTTTGTACAGAGAGTAGAGGAGAGAGAACGATGCCTTTTACCCCATGCACCTTACTAGCCCATCACGGCAGCCGCACAAATCTGGACGACCTCCGCAGCCAGTTGACCCAGCGACTCACGTTGGCTCTGATTGTCGTGGCCACGGTCGCCACCTGGTCCGTGCTGCCCGTGGACCCGATCCCCATGGACCAGCTGCTGACCTACGCCGGTCTGGCCATGTTGGGGCTGTCCGTTCAGGTGTTGGTGCCCACGCGGCCGTTGCAGGCGGCGCGGCTACTCCTGGCCGGAACCACCGCCGCGCTGCTGGTTGTCATCTGGTTTTTCCCCGCGCCCTGGTTGCCGTTTTGGGGCCTCCTGCTCGTATTCAGCGCCTCCCTGTTGATGCCAGGCAGCGAAATGTCGGTGGGCGGGGTGATCGCCCTGTACATATTCTGGCTCATGCAGGTGAGCGACCGGGTCTACCCCCTGGCCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGCAGACGATCCAACAGAGTGGATACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.40,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1478-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIGC02000081.1 Litorilinea aerophila strain ATCC BAA-2444 NODE_83_length_1507_cov_79.144203, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1477 37 100.0 37 ..................................... CTGTATTGGCACGACGGATCAACGACGCTGGCCAGGA 1403 37 100.0 41 ..................................... CAATTTCGCCAATTTCCGGCCGATTTTGGCCGAAATCGGCG 1325 37 100.0 37 ..................................... ATTTCCGGGCCAGGCAGATAGCGCCATGAAAATTCTG 1251 37 100.0 36 ..................................... GCTCACCTCCAACGTGGCAACCAGCATCCAGTAGGC 1178 37 100.0 35 ..................................... TGGCAGGCAACAACGGCTCCGCCGACCTCGTCTGC 1106 37 100.0 37 ..................................... TGTCGTTCTACTCCAACGGCCACCTGGTCAGCCGGCG 1032 37 100.0 38 ..................................... ATACCCCAGTTACATGAACCGCTTAACGATGCGAGGAG 957 37 100.0 37 ..................................... GTAGGCATCCGGGTCGATGGTGGCCACCACCGCCAAC 883 37 100.0 37 ..................................... AATTAAATGCTGAAATACTGGCACCGACCAGCACCAA 809 37 100.0 39 ..................................... AATTAAATGCTGAAATACTGGCACCGACCAGCACCAGCA 733 37 100.0 36 ..................................... GCCAGGAAGGGCCTTGATGGTGTCGCCGAAGGCCAA 660 37 100.0 37 ..................................... AGCATGCGCCGGGTGCCGGCACGATTGCTATCGTGGC 586 37 100.0 36 ..................................... ACTCGAGAACTCATACCAGACTTTTGGCGCGTGACG 513 37 100.0 38 ..................................... AACGTCTGCGCCGCGATGATGGCCAAGACCACCACCAG 438 37 100.0 36 ..................................... TGACTGCTATTAACTCGGATTGGGCAACCTGGGTGG 365 37 100.0 34 ..................................... ACACACCTTATCGACTACATGAACCGCTTAACGA 294 37 100.0 37 ..................................... TTGACGGCCGCCCGGCCCCTGAACCCGCCCGCGGAAC 220 37 100.0 34 ..................................... CTGGTAGACGCCGCCGCTAGAGCCGATACTCAAC 149 37 100.0 38 ..................................... TCGTCCGCCAGCAAACGGTCGTGCTGGCGGATTAGCTC 74 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 20 37 100.0 37 GTTGAAGCAGACGATCCAACAGAGTGGATACTGAAAG # Left flank : AGCAGCAAGCGTCAGGCACGGCGTCTGCT # Right flank : GATGATTGCAGCAGACGCCGTGCCTGACGCTTGCTGCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGCAGACGATCCAACAGAGTGGATACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //