Array 1 17183-17016 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZDX01000018.1 Liquorilactobacillus hordei DSM 19519 Scaffold18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 17182 35 100.0 31 ................................... CAAGCGATGTGCCAGGAGCTGCATTCGGCTG 17116 35 100.0 31 ................................... CTTAGAAACGGAGAGATTAAAGGCGAAGTTA 17050 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =============================== ================== 3 35 100.0 32 GTTTTAGAAAGACGTTAAACCAATAATGTTAGATC # Left flank : GTATTTGCCGGCTATTTTTAAAAAGATGTTCGCAGATATGCCAGATGAACAAAGAGGTAGAATTCATCTGGCAACTCAAAATCTGGATAACGCTATTCAAGAGGGTCTGTATTTAGCAGACTTTCCAATTAAGGTTACTTATGATTTTGATTTGAGAAAATCGTTAAAATTTGCGCATACACATTTTGATGATGATATTTTGAAACAACCATATGATATAATAAAAACAGTTCTTAAAATTCATCAAATATGTGAAATGAAATCATGTTTAACTATTTGTAATGTAGCTCATTACATAACAATTGAACAAATGGAAGATTTAGCAGCATTCCTACAAGACGTGATGTTGCCACTTGCTCTCATTGAATTCACAGATAATAAAGCAAATGAATTTTATAAAAATTGCAATTTTTACTATATTGACAAGGATTATGTCGATTGGTATGAATAATATTATTGTGTTGATACTTTCTTTGTGAGATCGTGATTAGAAAATAACG # Right flank : TAGGCAGCTAGTGAAAGCTGCTGGTTTTTTATGATATTCAAGTGCTTGGTTAACTGTAGCTACTAATCAGCTATCCTCCTATTTATATGCGAGCATCCTATGAATCTTTGGTTTATGTACTGAACTAAGATATACCCAAGTTTCATATTGAAGCTTAAGATAAGTGATATCAGCCCGCCAAGCACTAGTTTTTGGTTTGTTTTTAATCAGATTGGGGTGTGGTTCCCTATTTTTAATTTTTTAAATTCTTTAGGAATAACTTCAGTTCCATTATAATTTCAGCAATTTTGCATCTTTAATCTTGATGCAGGAGGTAATTCATAATTCTTCTGAAAGAGAACGAAACGAACTGATTTTTTTCCGTATTTTGCATCTTAATAACATAACACTCGCTTTAAAAACGCTGGTATATCGTTTCATATATAAAAACTCCTATGTTAGTTATTTAATTAGGTCATAAATGTCTAAGTATTTATATACCAAATATTAGGATAGAAATA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAAGACGTTAAACCAATAATGTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 1814-58 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZDX01000024.1 Liquorilactobacillus hordei DSM 19519 Scaffold24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1813 36 100.0 30 .................................... AATCTCTTTACTATTGTTGTTTGTTTTTTC 1747 36 100.0 30 .................................... AACTTATCCCGATATAGAACTACTGCATAC 1681 36 100.0 30 .................................... TTCAGGTAAAGATTTCCATGTGTGAGCATT 1615 36 100.0 31 .................................... TTGTGGCAAACATTCCTGCTCTGTTGACTGG 1548 36 100.0 30 .................................... TAATTTCATCCTTTACATGACTAATGCCAT 1482 36 100.0 30 .................................... AAAGTCAGCTGATTAACATTCACATCTGTT 1416 36 100.0 30 .................................... GGCGCTATGATTATTACACCACCGACTGTC 1350 36 100.0 30 .................................... ATAGTTAAAAAGCTTAAATCTCCATGCTCA 1284 36 100.0 30 .................................... CAAAATCTTTATATAGCTCGTTCTGCTTTG 1218 36 100.0 30 .................................... AAAAGATTGGTATCCCCACTTATCATAATC 1152 36 100.0 31 .................................... TTACCTTTTAATTCAATATATCCTGTACTTT 1085 36 100.0 30 .................................... AGACTCAGACTCAGACTCAGATACAGAATC 1019 36 100.0 30 .................................... ATTCTCACTAGAAAGTGAGGTGATAAATAT 953 36 100.0 30 .................................... GCGTTAGTATCACTAGCAATCAGCTCCTTG 887 36 100.0 30 .................................... GTTTCTCATCAAATACGAGTTCGATACCCT 821 36 100.0 30 .................................... CTAACCCAGCCGATAATGCAACAGTCACAT 755 36 100.0 31 .................................... TCACTGGTATTCAAAATGTTATTAACTCAAT 688 36 100.0 30 .................................... AGCAACTAGTGATGGTTATGCGGTGAATAT 622 36 100.0 30 .................................... ACAACACTAAATCTCCATAAACCTGTGGTT 556 36 100.0 30 .................................... TGTATCCAAAACGGATACGCAGGTTAGGTT 490 36 100.0 30 .................................... AAAGAGAAACTGATTTTTTCGCACCGGTAT 424 36 100.0 30 .................................... TTTTTCATTAACATAAGAATACACATAATA 358 36 100.0 30 .................................... ATGTATACTTATTATATTGAGTATGCTATA 292 36 100.0 30 .................................... TTTTGATGCTAGTCAACTAGTTGCGCAGGC 226 36 100.0 31 .................................... TGTTATATCCTAATCAGAAACTAAAGGTTAG 159 36 100.0 30 .................................... ACAATTTTAGTGTGCATAGAGTGCACATGA 93 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 100.0 30 GTTTTTGTACTCTCAACATTTTCCTATCAGTAAAAC # Left flank : AGCAAGTTTCTTAACAGCTGAAAAGATTCAGGTGTTGATAGATGGACTAGTCCAGTTGGCAGAAAAAACAGGGCTAGTTCATATCTTTGTAATTAGTCAGATACCATTGGGGATAAATTATCGGCCAAACGATATTCCAAATACGATTATTTTGGCAGATGAATTGTGCCAGATGCCTGATTTTGATAGCTTTAGAAATAGTATTGAAAATCATTATCCAGGAGATTTGAATATAACTGATGATCAGCTTTGTCAAAATTTTTATGAAATAGTCGCAGACATTGGTGATAATAATATTCTTACTGGAAAATCTTATCCAGATATTGTATTGTTAAAAGTGTTAGATGAAATTTTAGGATTCAAGGTACCTAATTTTACTTACAACCTCAAAGAGCTTACAAATACAGAACGTGCCTTTCTTGATTCTTGAAGATTGACGAATTTTTAGGAATAGAAGACGTAATTTTACCGGCCAAAAAAATAATAATTTTTAATTTGAG # Right flank : CTGCTCCTATGTCAATAAATGGCACATCTTTTTCTAAACACTCGTTCTAATTCTGTCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAACATTTTCCTATCAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //