Array 1 126343-125564 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007121.1 Thermosipho sp. 1070 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 126342 30 100.0 35 .............................. TTTATGATATCAACTATTTCAACCACCCCTTCTTC 126277 30 100.0 42 .............................. TTAATTTTGCGTTCCCAAACTGAATATAACTTTTATCAGCTG 126205 30 100.0 39 .............................. AACTGACTTAATTTTCATCTTATCCTCCTTAATTTTCAT 126136 30 100.0 39 .............................. AACTGACTTAATTTTCATCTTATCCTCCTTAATTTTCAT 126067 30 100.0 39 .............................. AACAGTTTACATATTTCACCATGATTTCCATAATATCTC 125998 30 100.0 37 .............................. CATGAAATCTTGTTTTTAGATATCTTTCCATATTTTC 125931 30 100.0 35 .............................. GACTGTCCGAGTGAAATCTGCTTTTCAAATATCTT 125866 30 100.0 38 .............................. CTGGGGTCACACCACAATAAAGCATATCCTGTGTTCGT 125798 30 100.0 41 .............................. CCTTCACGTGATTTCTTAGCTCTGCACATTTTCAAGATTAC 125727 30 100.0 37 .............................. TGTCAACTGTACGTTTGGAACAAAGTCTATGTAGTAA 125660 30 100.0 37 .............................. CGCTCCCACCGCAGCACATCCGTTTCTTCCATGCAAG 125593 30 90.0 0 ..........................G.TG | ========== ====== ====== ====== ============================== ========================================== ================== 12 30 99.2 38 GTTTAGAACATACCTATGAGGAATGGAAAC # Left flank : ATCTTTTAAGCATTATTTTTCTTTGTTTTTAATGATATTAAATTTTATTTTCTATAGTTAATTATATATTTTATTTATCTTAACAACAAATCATTTAATTATTATAATATTATGATTATATTACTTAATATCTAATAACATATATATCGCTTTTAAACAAAAATAATATCGTTTATTATAAATAATAAAAATAAAATTACGTAATGTAAAACAAAATAAAAATTAATCTAATTTGTTAATTATAAATAAATAAAAATAAATTAACTAATAGGTTTTCCATTTACACAAACTCATCAAAAATACCTTATTTAATAATATATTAATTGTAACCAATTGTAACGTTTAGGTTAAGATAAAAAATATATAAGATTTTCAACGACCTTTTCCGTTAACAAAAAGCTTGTATGTGGCTTAAAATAACATGTTTACTTTTAGGTAACTTCCGGTTAATCAAAATGAAAATATCTTGGTTCATAATAATTTATGAGGTTTTTTAATTG # Right flank : TAAAATTTTTATTTGAAAAAATTTTTTATTTTGTCAGATTTTTTTGTTTAGATTCGTAATTATAAATGAAAGGAGAGTTAATTGGGAGGGAATTTTATGTATGTTATTATGATTTACGATGTTAATAGAAAAAGGGTTTCAAAAGTTTTAAGAATTGCTAGAAAATATTTACGTTGGGTACAAAGATCTGTTTTTGAGGGTAGAATAACAGAGAAAGATTTTAATGAATTGAGAATGGAAATACAGAACATAATTGTTGAAAATGAGGATAGTATATATTGGTATATTTTAAAAAAAGAGTTTGTTCCTTATAGGCACTATATTGGTGAACCCAAATCAACAATTTCCAGTATTATATAGGAGGGAGTTTATGGAAACATTATATGTTTTTACAGATGGCGAAATCAGAAAGAAAAATAATGCGATGTATTTGATTCCAAAATCTGAAGAAAAAAAACCAATGATTGTTCCATTAAAAAATGTTAGTTCTATTATGATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAACATACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 306632-310795 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007121.1 Thermosipho sp. 1070 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 306632 36 100.0 41 .................................... TTGGTAAAAGTATATCCGCCATGTTCATTTTTTTCGTATTC 306709 36 100.0 36 .................................... TGATTGTTTATGGCATTAAAGGAAAAGATTTTACGA 306781 36 100.0 36 .................................... ACTAAGTGCAGAAAACGTTAGGATTAACGATTTATT 306853 36 100.0 39 .................................... TTTATACCTTGCGGTAGCTCATTAAAAGCTTTGACAAGT 306928 36 100.0 35 .................................... TTGATTTACGTCCCATAATATCACCTTCTATCAAA 306999 36 100.0 35 .................................... TGAGTCCGTTAGAAGCTGCGCTTGTTACAGTAGAA 307070 36 100.0 36 .................................... TTGGCTCAAAGGGTGTCCTTGATATGCTATTCCATA 307142 36 100.0 36 .................................... AAATCTTGGACCTATAAGACAGTGTCTGAGAAAATA 307214 36 100.0 34 .................................... GTTAGTTCAACTTCTCCATAAACTGTTTCTTTTT 307284 36 100.0 35 .................................... GATTTGTTCTTCCAATTTCCCCTCCAAAATTTCGA 307355 36 100.0 35 .................................... TTGGAAAGGCCGTTTGAACGAATTTATAGAAAAAG 307426 36 100.0 37 .................................... ATTTTGTCGTTTATGATAGGTTTCCAGCCCACACCTC 307499 36 100.0 35 .................................... TTTTTAAATTCATCTGCAGTAATAAAACCACTTAA 307570 36 100.0 38 .................................... TTGTTGTATGGTCTTCAGATATCCTTCAGGTGCCCAAT 307644 36 100.0 36 .................................... AGAAAATGGTAAAAATTAAAGACGTGTTGAGAAATG 307716 36 100.0 36 .................................... TTGTAAACGAAAAAATATAGTTATCTATTTTTGCGG 307788 36 100.0 37 .................................... ATAGAATTTTAATCAGGAGGGATAGGTCATGAAACAA 307861 36 100.0 40 .................................... AGCTTTATTTTGCTTCAGTGTTTTTAAAAACAACATCAAT 307937 36 100.0 38 .................................... CGTAAGAAAAGAAATACTCTTCTTTAGAAGCAGCAACA 308011 36 100.0 36 .................................... TATGAGTAAGATTTTTAAAACGTTCCACCCTGTCAT 308083 36 100.0 34 .................................... ATAGATAACGCACATAAGGCTATTATCCTTGAGA 308153 36 100.0 36 .................................... TCTTGATTATATGCTGTTCGAAGTCTTCTAAATCTT 308225 36 100.0 35 .................................... GAAGCAAATAAAGAGGAGGCTTTACCTGACGTTCA 308296 36 100.0 37 .................................... GCTAAAGCCGCGGGGGTTGCTATTGCAATTGCTCAAG 308369 36 100.0 37 .................................... CTATTACGTAATTTAGATAATTGCGTTTCGAAAAATT 308442 36 100.0 35 .................................... ACAAACAACTCCTGACATCTCTCAAAAATCTTGGT 308513 36 100.0 37 .................................... TTTCTTTGGTTGGAAAAGGTATTGTAGCAGTAGTTTC 308586 36 100.0 34 .................................... ATGAGATTGATTGGGATATAGGATTGATACATTG 308656 36 100.0 38 .................................... AAGGCTGATGCAGTGGTGGTAAAAGTTTCGGGTGACGG 308730 36 100.0 37 .................................... ATAACCACCGAGGGGAGTAGGGCTCTCCGAGAGGAGA 308803 36 100.0 39 .................................... GCTTCGATATTATCGTTGGTAAGTTTTTCGACTGCTTTT 308878 36 100.0 39 .................................... TTCAAGTTGAGCGCTTGTATACGTAGCAGCCATTTCAGT 308953 36 100.0 35 .................................... TGAAGTAAAAAAAGAACTGTCTGTACAGGATAAAA 309024 36 100.0 34 .................................... GAAGTAGATGGAAATAGAGATGCAAGTGATTCGT 309094 36 100.0 37 .................................... TAATAACTTCTAGTGCTTTTCTTTGCCAATCTTGAAT 309167 36 100.0 37 .................................... TAAGAATGCTAGTGTTAGTTTACGACTCAGGCAAGAT 309240 36 100.0 36 .................................... GATTAGTTACAGGGACAATCAATCCAGCGTCTTTTG 309312 36 100.0 38 .................................... ACGTTTAAGACGGGCAACTGGAGATATACCAAATCAAA 309386 36 100.0 35 .................................... AGCTTTTTAACGGTGCTCCAAGATTTGATACAACA 309457 36 100.0 34 .................................... TTTGTTTGAAAAATGTATACCAGAATAATATATT 309527 36 100.0 37 .................................... ATAAAATTAAAATCATTTATGTAGGTGCCACAGAAGA 309600 36 100.0 36 .................................... GGAAATACGTAGATGGTGTTACTTGGCAAGGAATAG 309672 36 100.0 37 .................................... TTAACTTCTTATATTCGATCCAACCCCCGTCAAATTC 309745 36 100.0 38 .................................... GAAACGCTAAGGAATTAATTATTAACAGAACGTCTGAT 309819 36 100.0 35 .................................... AATTTGTTAGGAAAGTATGGGAATTTTGAGAATGA 309890 36 100.0 36 .................................... TCTACTAATACAAATGGAAAGATTTTCCTTCCTGAG 309962 36 100.0 38 .................................... TCTTTAATACATCCTTTGGTGCTTCAAAGGAAATACTG 310036 36 100.0 36 .................................... ATATTCAATAATCAACTTACCTATATCCGGCAAACC 310108 36 100.0 38 .................................... CTACGTTTATCATCGTGCTTAATAACACCTAGTATCCT 310182 36 100.0 36 .................................... CTTTTGCTAATCTTGGTAACGAAGGTACTTATGCTA 310254 36 100.0 40 .................................... CTAACGCACCAATAAGCATTTGCAACGCTTCGTTCATAAT 310330 36 100.0 34 .................................... TTTAAAAGAGCTATTGATGAACATTCTTTGCCGA 310400 36 100.0 34 .................................... TTTAGATGGGGTTCATTCGCCCGATAATTCTTAT 310470 36 100.0 37 .................................... ATGTTCTTGCTTGAGATTTGACGCATCTCGAATCCCT 310543 36 100.0 38 .................................... GACAAATTGTTTGAAAAAGTATTTAATGGAAAACTTGA 310617 36 100.0 35 .................................... GCTTTATATGATTTAACATCCATGGGCATTTTACC 310688 36 100.0 36 .................................... TTTTTTATGAATGTTGGTGTTACAATTTCTTTTGGT 310760 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ========================================= ================== 58 36 100.0 36 GTTAAAAAACCTAATTCCATAAAATGGAATTCAAAC # Left flank : GGAATATACTCCTTTCATTGTAAAGAAGTGATTTTCATGATGACATATATAATCAGCTATGATATAAAGAAAGATAAGAAAAGAAATAAAATATCAAAAATATTAGAAGAATATGGACAAAGGCTTCAATACAGTGTATTTATTTGCCAAGTTCCAAAAAAAGAACTTTATAATATACTTTTAAGGATGAATCCTATAATAGACAAAAATACAGATTCAATTTTAATTATCCCAATAAATTTATCCAAAATGGAAATTATAGGTACTGTAAAAATAGATATTTTAACCAATAATGACAATTATATATTATAACTAAATTATAACTAAAATCTATCCGCGAATCTTATTTTTCTCAAAAATATATAATATCCACGACACTCTCCAATAAACAACTATCTAACATTGAAACAAACTTATTTAAAAATTTTTTAAGTAAAAAACGTTAACACACGCATTTACGGTCCTTGACAATTTATTTTTTTTGTTTTAGTATTGATAGT # Right flank : TTGTTACTACACTTGTTTGATATCAATATTTATGTTTAAAAATTGATATAGAATTTCGGCTACTTATACTGTAATTAATAAAAAAACATGGCTCCATAGCTTTTTTTATACTGAATTCCAAAAAGTCTCAGAAATAACAAATAAAACCAACAAAAAGGTTTTTTTCTTTAAACATTTGAACTAAAAAATGAAGAAATATATCTCAAATACGTAATGTTTACGTGTGTTATCGTATAACAATTGTACTAAAACAAAAAAGTATATAAATTAATATAAAAAAATTTAATACAAAAAAATAAAGCCTAAGAAAACGATACACATGGAATATATAACAAATGGAAGATATAAAAAAGTAGTATATAGTATGAACAATTTAAAGCATGTCAAGAAAGGGAATACCTCAAGACAAGAAAAAATAGCATGGCTCCAGTATAGTACCAAAGCCATGCTATTTGAAAAATTAATAAATTGATTTTTTTTATTACGCTTTCGAGGATAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAAAACCTAATTCCATAAAATGGAATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 3 625089-626267 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007121.1 Thermosipho sp. 1070 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 625089 30 100.0 37 .............................. ATGGTTTTAAGTTAAAAAAAAAGACGGGGAACTATAA 625156 30 100.0 37 .............................. TCCTTCTCGAAGGCGGTGAAGCCAGAGTCTTCGGCCA 625223 30 100.0 41 .............................. TTATTTACTAAAATCAAATCATCGTTAAATCTGACTAAAAT 625294 30 100.0 38 .............................. CGGAAGCTCCATTTCTTTTTCTTTTCTTGCCATGTTTC 625362 30 100.0 36 .............................. TTCACCGTTTCTTGACATATCTTTGATTTTTATCTT 625428 30 100.0 37 .............................. CCGACGGGACTTGCACCCGAAGACTGGGAAGTCTCCA 625495 30 100.0 38 .............................. ATTTCGAAGGGGAAAATCTTTATAACATCTATTATTTC 625563 30 100.0 36 .............................. CCATTTTCCCCTCCAAAATTTCAAAGGGGAACATTT 625629 30 100.0 36 .............................. TGTGGCCACCACCAATTCCAATTTCTCCCCATTTCT 625695 30 100.0 36 .............................. TTTCATCGTACACGGATTTAATTACGTCTTTAATTT 625761 30 100.0 39 .............................. AAGCCTTATGATGCCGCGACTGATTTCTACGTCTTTTTC 625830 30 100.0 35 .............................. TAAGCTCTCTTGCAACACATTGAAAAATATTTTCA 625895 30 100.0 39 .............................. GATCAAAATCATCTATAATAGGAGCTTCCAAAATTTCTT 625964 30 100.0 41 .............................. TTATATCCCCAATGAAGCTATTAAATTGTTCCTCCAATTTC 626035 30 100.0 39 .............................. AATCTCGAAGGGGAAGAGTTTCATTACATTTATTATTTC 626104 30 100.0 39 .............................. TCAATCACGCCACCTTCCTTATCGAAGGCGATATATCCG 626173 30 100.0 35 .............................. TTTTTCTTTTATGGACGTATATACATCATCAATCA 626238 30 93.3 0 ............................TT | ========== ====== ====== ====== ============================== ========================================= ================== 18 30 99.6 38 GTTTAGAACATACCTATGAGGAATGGAAAC # Left flank : TTTTAACATAAGTTATTTTTCTTTGTTTTTAATGATATTAAATTTTATTTTCTATAGTTAATTATATATTTTATTTATTTTAACAACAAATCATTTAATTATTATAATATTATGATTATATTACTTAATATCTAATAACATATACATCGCTTTTAAACAAAAAGAATATCGTTTATTATAAACAATAAAAATAAAATTACGTAATGTAAAACAAAATAAAAATTAATCTAATTTGTTAATTATAAATAAATAAAAATAAATTAACTAATAGGTTTTCCATTTACACAAACTCATCAAAAATACCTTATTTAATAATATATTAATTGTAACCAATTGTAACGTTTAGGTTAAGATAAAAAATATATAAGATTTTCAACGACCTTTTCCGTTAACAAAAAGCTTGTATGTGGCTTAAAATAACATGTTTACTTTTAGGTAACTTCCAGTTAATCAAAATGAAAATATCTTGGTTTATAATAATTTATGAGGTTTTTTAATTG # Right flank : TCAAAGGGAAATGATAGATATCATTTCACATAATTTGAAAAGAATATACACAAAAAACAGCAAAATTCCATGATGTTTCGATTTTTTTCTAAAAAAATGCACAGAAACAAAACAGCATGACTTTGGTAGAATATCAAAGCCATGCTGTTTAAAAGTAAATCTAAAATTGCGAATTATTTTAATATATGTCTTAAAAATTCTTTTGTCCTCTGATTTTTTGGTTCTTTAAAAATTTCTTCTGGTTTTCCTTCTTCTGCTATAACTCCTTTGTCCATGAAGATTATCCTATCTGCTACTTCTCTTGCAAATCCTATTTCGTGTGTTACCACTATCATTGTCATACCAGATTTTGCAAGATCCTTCATTACCTCTAAAACTTCACCTACAAGTTCTGGATCAAGAGCAGATGTAGGCTCGTCAAATAACATAAGCACTGGATCCATCATTAATGCCCTTGCAATGGCAACCCTTTGTTTTTGACCACCTGACAAATTATCTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAACATACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 925387-923880 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007121.1 Thermosipho sp. 1070 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 925386 30 100.0 38 .............................. ATTACTCCTCCTCCTCAAAAATTACTTTCAAAAATTTA 925318 30 100.0 38 .............................. TATTGAACAGTAAATTTTTCTACAAATATCATAATAAT 925250 30 100.0 39 .............................. CGACTGATTTCTGCGTCTTTTTCAAAAACTTTAACTTCA 925181 30 100.0 39 .............................. AGCCATTTCCAAATTTTCTTTTCGATTTCTTTTCTCATG 925112 30 100.0 36 .............................. TATTAAAATCATCTATAATAGGAGCTTCCAAAATTT 925046 30 100.0 40 .............................. CGTCTTCCATATATTGTTTTAATATTTCTGATATTTTTTT 924976 30 100.0 40 .............................. TCTCTCCATTTTTGAGAACTGATTTGATCAAGCACATTTT 924906 30 100.0 36 .............................. CGTCTTCCATATATCGTTTCAATATTTCTGCAATTT 924840 30 100.0 34 .............................. CCATTTCTGAGAACCGATTTGATCCTCAAGCACA 924776 30 100.0 32 .............................. GAGGATTACTCCTCCTCAAAAATTGCTTTCAA 924714 30 100.0 35 .............................. TATTATATTTATTATCTCAATCACGCCACCTTCGA 924649 30 100.0 40 .............................. TTTCTAAAAATAGACTTAATCTTTAAACCCATTCTATCAT 924579 30 100.0 35 .............................. ATATAACATTTGTTGCCTATTGCTAAATTGAATAA 924514 30 100.0 38 .............................. ATGAAAACATCTGATAAATTTTCATCCAACCATTTCCA 924446 30 100.0 35 .............................. CAATTCTTCCTGTCGCGCATATAATCGACTTAATA 924381 30 100.0 36 .............................. TATGATGTTCCTTGCCAACGAAACCATATCCTACTA 924315 30 100.0 38 .............................. TCAATATTTTGACTTCCATGACATCCCCTCCTCTTTTT 924247 30 100.0 42 .............................. AAGAATCTCCCGAATATCATTTCGGAAGATCCTTAATTTTTC 924175 30 100.0 37 .............................. TTTTTATTTCTTATTACTTTAATTACCATATTTTCCC 924108 30 100.0 36 .............................. TAAAATCTTCAAATGTTTCTAAAAATTCTCTTTTTC 924042 30 100.0 33 .............................. TCTGTAAATTTTAAATCAGCTGCTATATACAAT 923979 30 100.0 40 .............................. GTGTGTGGTGTTAAATTAATAAATTTTGCCATAATATCAT 923909 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 23 30 100.0 37 GTTTAGAACATACCTATGAGGAATGGAAAC # Left flank : TTTGTCTTTCAACAATAATTTTTTCATTATTTTTAATTATATTAAGTTTCATTTTCTATGATTAATTATGTGTTTTATTTACGTGAAGAATGTTTAGTTAAATTATTATAATATCATAATTATATTATTTTATATTAAACACTGTATTTTCTTTTATTGAATAGAAAATATCATTCGTTATGAACAAAACATAAAATTACGTAATATAAAATAAAATAATATTTAATATAATTTGTTAATTATAAACAAATTAAAATAAATTAACTAATAGGTTTTCCGTTTACATAAATTCATACAAAATACATTGTTTAATAAAATATCAATTGTAACCAATTGTAACGTTTGGGTTAACACAAAAAATATAAGGAATATTCGATGACCTTTTCCGTTAACAAAAAAGCTTGTATATGGCTTAAAATAATGTGTTTACTTTCAGGTAACTTCTAGTTAATCAAAACGAAAATAATGTGGTTTATAATAATTTATGAGATTTTTAATTG # Right flank : TTCATTGTGTGTGTGTACAAAAATCAAAGAAAATTATTAAAAAATCAAGTACAGAATAGAACAGATAATAGGAATAGTGAAAAACATATTCGGAGATAGAACTTTTTTATTTAAAATACCAAAACTGCGTGTATATGTAAGAATTATATTGTACAACTTGATAGAGTTATTCTAAATAATTTTTTATTTAATTTTGTGCAAGATACTTTATTATTCGAATGTATTTAGTTCATAGCTCTATATGCCTATTTGTTTTATATCTCTTTGTTTTTTGAACAGAATCTGAAATTAATTGACAATATCGCTTCTTTATATTAAAATAATAGAAAGAAAAAATTAACAGTTGGTGATATTATGAAAAAATTATCGACAAAAGAATATTTTACCTATTTTAAAAGTGAAAACTTTGTTTGGTGGTGGAACAGTGGCGATTGTCCACCACCTTTGTTGTGGTAAAAATATACTTGAGAGGACAATTGCCGGGCATTATCTGCCCGGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAACATACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //