Array 1 18336-17046 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAIE01000016.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22818, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18335 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 18269 36 100.0 30 .................................... GGCGGATGGCATACGGCGTGCCTTTTCGGT 18203 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 18137 36 100.0 30 .................................... CCGTCACTACACGAACTGGCGGACTTCTTG 18071 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 18005 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 17939 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 17873 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 17807 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 17741 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 17675 36 100.0 30 .................................... CTTTCACTTCAGTAATGGCTTCGGCATATA 17609 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTTCTATACA 17543 36 100.0 30 .................................... GTGGGAGTTCGTCTATGAATTCGATGGCGT 17477 36 100.0 30 .................................... TTTGCTGCCCGACAATGCGCGTCCGCAGAT 17411 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 17345 36 100.0 30 .................................... TTCCAAAGTTTTAATTTATATTATTTTAGT 17279 36 97.2 30 ............................A....... CAGAAGATGATAACTGTGCTGGGGGTGCGT 17213 36 100.0 30 .................................... ACGCAATAACGGCGAGTTTACGCATCAATG 17147 36 100.0 30 .................................... TAACGATTGAAAGTGAGTATGTATTAAGTA 17081 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTGTCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //