Array 1 954402-960134 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJL01000001.1 Erwinia amylovora strain VTDMSF02 tig00000000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 954402 29 100.0 32 ............................. GCGCTGGAGTCGTACAGAAAAGAGTGGGACGA 954463 29 100.0 32 ............................. GTGTAGGTCTGGATCATCAGGTCACTGCCCTC 954524 29 100.0 32 ............................. CTGGGTAAATACGGTCTGGTTGCTGCCCGCCA 954585 29 100.0 32 ............................. ACCGCGAACAGCTCAATCTTCGTTATCAGCAG 954646 29 100.0 32 ............................. CTGGAAGATGATATTCAGGCCATCACGCAGGG 954707 29 100.0 32 ............................. ATGGTGTCGCAAAGTGTCGGGCCGTGAAGGTA 954768 29 100.0 32 ............................. TTTTTGTACTGTGAGAAAACGCTGTCAGAGGA 954829 29 100.0 32 ............................. ACCCAGCTAGGGAATGTAGGTCTAGTCATGAA 954890 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 954951 29 100.0 32 ............................. GACGCTATAAGCCAGGCAAAAAGCCAGTATGA 955012 29 100.0 32 ............................. CCAGGATAGTCCGTTTTGATACCGTTAATCAG 955073 29 100.0 32 ............................. CGAAAAACATTGCACAAACCGAGCAGGTGGGG 955134 29 100.0 32 ............................. GTATTTATTTTTGCTCTACTTGCCGGGATGTC 955195 29 100.0 32 ............................. CCGGTTAACGTGCTTAAGGGCATCACTGAGAT 955256 29 100.0 32 ............................. CAATATCTTTTGTTTGCGTATAGATATCCTGC 955317 29 100.0 32 ............................. GTCAGGGAACTGACCAAAACCAGCTTTGAAAT 955378 29 100.0 32 ............................. TTATCACATTGATTTTATGAAATTATTTAATG 955439 29 100.0 32 ............................. AGCGGGACAGGTATATCGCATTAACACTGGCA 955500 29 100.0 32 ............................. TCAGTTCATTGGGCAACAGAACGCATCAACAT 955561 29 96.6 32 ............................T GAGGTATGTACTGCATCGTGCCCTGAACAAAT 955622 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 955683 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 955744 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 955805 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 955866 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 955927 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 955988 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 956049 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 956110 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 956171 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 956232 29 100.0 32 ............................. CATAACGCTTCTTTTCTTTGGTTCTTCTGTCA 956293 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 956354 29 100.0 32 ............................. CGAACCTATGCGGCATTAGCGGATGCCGCCGG 956415 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 956476 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 956537 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 956598 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 956659 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 956720 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 956781 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 956842 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 956903 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 956964 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 957025 29 100.0 32 ............................. TTTGGTGATAAAGGATGGGTGCGCGAGGAAAT 957086 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 957147 29 100.0 32 ............................. TGCTGAATACCGGTAAGCCTGGCTCTATCACC 957208 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 957269 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 957330 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 957391 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 957452 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 957513 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 957574 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 957635 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 957696 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 957757 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 957818 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 957879 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 957940 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 958001 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 958062 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 958123 29 100.0 32 ............................. GGAGAACGGCGGTCAGATTCCGGTAAACTGCA 958184 29 100.0 32 ............................. CCGGAGACAGTGTTGAAGCCGCAGTCACTCTA 958245 29 100.0 32 ............................. AGTGCTGAGTGTGTTAGTAGACAACCGGCCTT 958306 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 958367 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 958428 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 958489 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 958550 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 958611 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 958672 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 958733 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 958794 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 958855 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 958916 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 958977 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 959038 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 959099 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 959160 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 959221 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 959282 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 959343 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 959404 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 959465 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 959526 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 959587 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTACGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 959679 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 959740 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 959801 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 959862 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 959923 29 93.1 32 .C...............A........... AGCTCAAATGCTACGCATCAGCACTGATTAAA 959984 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 960045 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 960106 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 94 29 99.5 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 969173-972742 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJL01000001.1 Erwinia amylovora strain VTDMSF02 tig00000000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 969173 29 100.0 32 ............................. GGAACCATATTCTTCATAGCCTAGCTTTTCAT 969234 29 100.0 32 ............................. CGGGCGAGTTTTTCAGGATGCGTCTCATTGAA 969295 29 100.0 32 ............................. CAATTTGTATACAGTCGAGAACGTGCCTTATG 969356 29 100.0 32 ............................. AACCTTTTACCATTGTCATAACAATATCTTCA 969417 29 100.0 32 ............................. CCAGGGGAGTTTCTTATTTTCCGGAGAGAATG 969478 29 100.0 32 ............................. TACGTCAGCGGCATTATAAGGATTTACACGGA 969539 29 100.0 32 ............................. CCTTCAGGCCGCTGGATAGATGCTAACCCACC 969600 29 100.0 32 ............................. ATTTCTGGATTAACACTCAGGCGGCTCATGAC 969661 29 100.0 32 ............................. GTCATTCATACGGGCTATACCGTCCTCCAGAT 969722 29 100.0 32 ............................. GTCAGCAGCTGTAATAATGCGCACCTTTTCCC 969783 29 100.0 32 ............................. GTCAGCAGCTGTAATAATGCGCACCTTTTCCC 969844 29 100.0 32 ............................. CGGGCATTAGCGGCTTTGAAACGAGAACTGGA 969905 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 969966 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 970027 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 970088 29 100.0 32 ............................. CCATTCCCGAGCCATCGTCGCGACATCCAGGC 970149 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 970210 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 970271 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 970332 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 970393 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 970454 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 970515 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 970576 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 970637 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 970698 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 970759 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 970821 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 970882 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 970943 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 971004 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 971065 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 971126 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 971187 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 971248 29 100.0 32 ............................. TCTTTATGACGCAAAGCAAGCCTCAGCCGAAC 971309 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 971370 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 971431 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 971492 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 971553 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 971614 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 971676 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 971737 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 971798 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 971859 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 971920 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 971981 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 972042 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 972103 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 972165 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 972226 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 972287 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 972348 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 972409 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 972470 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 972531 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 972592 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 972653 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 972714 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 59 29 99.5 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATGATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //