Array 1 327312-330462 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE375664.1 Serratia marcescens MC620 Contig331, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 327312 28 100.0 32 ............................ ACGATGCCGTCGGTGTTCGCCGAAACGACGCT 327372 28 100.0 32 ............................ TGTGCGCAGATCCCTAACTGGATTTATGACGG 327432 28 100.0 32 ............................ GGCGGCCGTCAGCTGCCCGTCGCTGCTTGCGC 327492 28 100.0 32 ............................ GTCCCCCTGCCAGGCACTCATGAGTCGACAGC 327552 28 100.0 32 ............................ AAAATCAGCCCAGATTGTTGCATATCAGGCAC 327612 28 100.0 32 ............................ TGCCAGCGTCACGGCGGGCTTCGACCTGTGCG 327672 28 100.0 32 ............................ AACGAGGGTAAATTCGTCGCCAAAATGAAGCA 327732 28 100.0 32 ............................ TTTCACTGCGCCGCCCTTCACGCCCCGGATGG 327792 28 100.0 32 ............................ TATGGCTATCTCAACGATCCAAACTTCTTGCC 327852 28 100.0 32 ............................ AGAAAGCCGGAGAGCTGGCCGACGATCAGGAC 327912 28 100.0 32 ............................ ACTCTATGCGGCAAACCTCACCGACCCGCATG 327972 28 100.0 32 ............................ TTTGCTCCAGGCAGCTCCAGGTGCATGCGTCA 328032 28 100.0 32 ............................ ACAGATGCGTTATATGGGAACCCGTTCGCGGT 328092 28 100.0 32 ............................ TGATTCACAGCGGGCAAAATGCTGTCGGGTGC 328152 28 100.0 32 ............................ GCGAACAAATAACCTACGTTTCCAGGATTGAT 328212 28 100.0 32 ............................ AGTTATCGATTGCCGAGCGCGCCGCCTTTGGT 328272 28 100.0 32 ............................ CCACTGAGCAAAGCGTGGGTCATTGACGTAAT 328332 28 100.0 32 ............................ TTCACAATCTTTCCTTTCTCGTCGCGGTGATA 328392 28 100.0 32 ............................ TGCCGTATCGATGTCGGTCAGCACCACCCGCC 328452 28 100.0 32 ............................ TGTCCGAGGGTATCGATTGCACCCGAGAGGGA 328512 28 100.0 32 ............................ TTACTGGCCTTCTCCAGTCTTTGAGCCTTTTC 328572 28 100.0 32 ............................ AGCGCGTCGCGGACGTGATGACCAAAGGTTTC 328632 28 100.0 33 ............................ ATGCTCATTTTCGCGGGCAAACGGCGCAAATCG 328693 28 100.0 32 ............................ GATCAGCGGTAGGGATGAAATCGCCCGTTCCG 328753 28 100.0 32 ............................ AGTAAGTGGCTTTGGTAGGTGGTGCGATTAAC 328813 28 100.0 32 ............................ GACGTCGGCGCGGATTTCGGCATGGAGGCGCC 328873 28 100.0 32 ............................ ATCAGGGGCATGCAACATGGCAGAGGATAAAC 328933 28 100.0 32 ............................ ATAGTTACCCCTTGCCGAGTTAGAAAATGACC 328993 28 92.9 31 .......................GA... TGTTTTTTTTCTCAAACCCCTGAGCGGCTTT 329052 28 100.0 32 ............................ TGGAACGCAGTAGTGCGGGGGTCAAATACGAT 329112 28 100.0 32 ............................ GGACTTCAGCCTGTGCTAAGAGCGTGACGAGC 329172 28 100.0 32 ............................ TCCTGAGGTGTTTGACCGCGTCTTCGGATTTG 329232 28 100.0 32 ............................ TACGCCACCGCCTGCAGCGGCTCCTGCCGATA 329292 28 100.0 32 ............................ TGTATCGAACATCGTCAATGTGACGGTAAATA 329352 28 100.0 32 ............................ GAAACTTCGCCATTCCATCCGGCGCCGTCGGT 329412 28 100.0 32 ............................ AATGATAATTTCTGCCGTGCCGGCATCCTCTG 329472 28 100.0 32 ............................ AGGGAATCGGTTGATATCGCGCTGGTACGCCA 329532 28 100.0 32 ............................ AGCGACCGGGAACCCGTTCGCGATCGAAACCC 329592 28 100.0 32 ............................ ATAGGGATCGTGGCGCGCGTCACCAGCTGATA 329652 28 100.0 32 ............................ TTGGGGTGACGGCTACGCCGGGACGCGCTGAC 329712 28 100.0 32 ............................ GTGCAGACAGCACTGGCACGATCACGTTAACC 329772 28 100.0 32 ............................ ATCATGGAAAGCCTTTATTCTAAAAAGAAATA 329832 28 100.0 32 ............................ TCGGCCTGTTCCCACGTCAGCAACCATGTGAA 329892 28 100.0 32 ............................ TAAGCAGCAAAATAAACCTCAACAGTCGAATG 329952 28 100.0 32 ............................ GATGGATACCATTGCCAATCAGGTGGCCAGCA 330012 28 100.0 32 ............................ TGGCGAACGTGGACTATTACGGCGACGCCGCT 330072 28 100.0 32 ............................ ACAAAACCTATTTCAGCCGGACGCTGCGCGAA 330132 28 100.0 32 ............................ ATCGGCCGAGCGGGCGTGAAAACGGTAGGAAC 330192 28 100.0 32 ............................ GATAAGGATAAGGCTCGACGCCGTGCAGCCGC 330252 28 100.0 32 ............................ ATTACTGAACACCCACCAGCGGAGCAGTCAAA 330312 28 100.0 32 ............................ TTCGCTTCCAGCTCTGCCAGTAGTTCGAGAAC 330372 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 330432 28 96.4 0 ....................A....... | A,A,G [330452,330455,330458] ========== ====== ====== ====== ============================ ================================= ================== 53 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAGTCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGACTCACCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCATCAGTGGTGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGGTTGCCGAACCCTTTTTTGAGTGATACTTTTAATTTATTGATTTTAAATCATATTTTTAATCGCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGCCTGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 338944-340050 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE375664.1 Serratia marcescens MC620 Contig331, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 338944 28 100.0 32 ............................ ATACAGTCGGAGATCAACCCGGCGGCGAACGG 339004 28 100.0 32 ............................ ATAACTGACGCTTAGCGGGTCAGTCTTCCACC 339064 28 100.0 32 ............................ TCAGTGTTGCCGGTGCCGCTTGCTGCCGCCAG 339124 28 100.0 32 ............................ TGATGGCTCAAGCAATGAGCATAAAGGTTGGC 339184 28 100.0 32 ............................ ATGATCGGCCCGCTGCCCAAGCGCATGCGCGC 339244 28 100.0 32 ............................ ATAGCGCAGTCCTTCACGCGATTAGCGTATGC 339304 28 100.0 32 ............................ GTATGCACTGTGGACTCCAGGTCATCGAGGCT 339364 28 100.0 32 ............................ AGAAAGGCATTCCGCCCTGGAAGATTCACCAC 339424 28 100.0 32 ............................ ATTCGGACGCGCTGCTGAGCGCCCAGGCGAGA 339484 28 100.0 32 ............................ AATAGGTTGGCTCGTAAAAGTGAATCGTGTCC 339544 28 100.0 32 ............................ CGGGTGCGTGGGCGCCCATCATTAGCTAAAAC 339604 28 100.0 32 ............................ TGGCACCGATTGGCAGGATATTACCGGCACGT 339664 28 100.0 32 ............................ ACGAGCATGGATAGTCGGGTGCGCGTGTTCGT 339724 28 96.4 32 ..........................G. GCCCCGCCAGCGCCAGCAGTGCCGGATGACTA 339784 28 100.0 32 ............................ TGGCTAATGACCCAACTTACAGCACGGCAAGC 339844 28 100.0 32 ............................ AGGGAAATCCAGGCCGATGAGGAAACGCGCAC 339904 28 100.0 32 ............................ ACGGAGGTGGCCGGCAGCTTGATGGAGAAGAT 339964 28 100.0 32 ............................ TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 340024 27 82.1 0 .........T...C.A....-..T.... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGGCTATTTTGCTCA # Right flank : ATAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGTCGATGGCGCCCCACATCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //