Array 1 1-156 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QUGD01000032.1 Clostridium sp. AF21-20LB AF21-20LB.Scaf32, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	=================================	===================================	==================
         1	    22	  63.6	    33	-----------.......A..............	TCCACCTCCTAATGCAGTACCAAGAGCGCCCCG  	
        56	    33	  87.9	    35	G......C..TC.....................	ATCATATCGTATGCGGTATATGTAATAGTCCCGAT	
       124	    33	 100.0	     0	.................................	|                                  	
==========	======	======	======	=================================	===================================	==================
         3	    33	  83.8	    34	CGTCGCTTCCCTCGCGGAGGCGTGGATTGAAAT	                                   	       

# Left flank :   |
# Right flank :  TGCAAGTCCCTCGTAAAAGCTCCATAGGCTCTTTCCACACTTAGTTGATTTCACAGCGAAATTGTTCATGAAGCAGTACTTTTGCCTTCAATAATTTAAAACTATTTCTGCCATACATAATACGTTTTATTACTTTGAGTTTATTAACGCTTCCCTCTGCCAAACCATTATTATATTGCATGGCAATTCCATTTTTCACAGCAACAATATCCTGTCTTATACCATTCACATATGTTTGCAACTCAGGAATATTAAATTTTTCCAGTTTAACAAGCCATGCGTCTAGCTTTTCTTCATGCTTTGAATATATAATTTCATAAAATTCCTTTATGGTCACATAAAGGTCGGCAATCACTGGGTATGATTTTAAAACTTGCTCATATTGTTCTTGACTGATTGTTTTCACATCGTCCAACCCTTTATATATTAATTGCGTTAGTGATCGGCGTTGTACGTATTCTTTCGGCTGATAATCAGAACAAGCATCTTCTTTTTGAGCG

# Questionable array : NO	 Score: 6.36
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.19, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CGTCGCTTCCCTCGCGGAGGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [1.7-55.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.37,0.68   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
//


Array 1 104124-104321 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QUGD01000008.1 Clostridium sp. AF21-20LB AF21-20LB.Scaf8, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	=================================	====================================	==================
    104124	    33	 100.0	    32	.................................	AAATCCCCGGATCTCTTCCGGAGTCTTTCCGG    	
    104189	    33	  97.0	    36	T................................	AGAATTGCATAGCCGAATTCGCCGCCGCGCCACGAA	
    104258	    33	  97.0	     3	................................G	TCG                                 	Deletion [104294]
    104289	    32	  90.9	     0	-CG..............................	|                                   	A [104314]
==========	======	======	======	=================================	====================================	==================
         4	    33	  96.2	    24	AGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAT	                                    	       

# Left flank :   CCGGTTTTTTTGTGGAAATGAGGTGTGGAACATGTTAGTATTAATTACGTACGATGTTAATACAGAAACAGCGGCAGGCCGTACTCGTCTTAGAAAAGTGGCAAAGCAATGTATGAATTATGGCAGAAGAGTACAAAATTCGGTATTCGAATGTATAGTAGATAACGCACAGTGTGTGATGCTTAGATCACTTCTTACAGACATTATCGACGTTAATGTGGACAGTCTTCGGTTCTACTATCTGGGAAATAAGTATCAGACGAAAGTTGAGCATGTAGGCGTGGACAAAGGAATAGCGGCGGATGATGTTCTTATCTTGTAACAAGTCTGTGCGAACCTAAAGCAGACATAAAAAGCCTGATAGGTTCGCACCTGAAAAAGTAAACAAAAACAAATAAAATGATTAATTGCTAGATGGTATATACATTAATTTGAAGTGCCAGATGGATGATCTATACAAGGAATACTTTGGATCAGATGTAAAAATTGGTAATTAATGC
# Right flank :  TATTGCCATTCGCAGTAATA

# Questionable array : NO	 Score: 6.91
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:-1.24, 8:0.4, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     AGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [6,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-7.50,-5.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [70.0-20.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [10.05,0   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
//