Array 1 33337-32819 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABELW010000028.1 Streptomyces cacaoi strain DSM 40057 X0168_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 33336 30 96.7 31 .............................A GGGCGAAACGGTGCTAAGGCAAAGGACACCA 33275 30 100.0 31 .............................. CGGCCTTCGCCGACTTGCTGTCGTCGCTCGC 33214 30 96.7 31 ........................A..... GCCGCCTGGAGGTGGTGCTCCAGCGGACGGA 33153 30 93.3 31 ........................A....C CGGTGCCCATACAGCGCCGCCGGGGCAGGTA 33092 30 93.3 31 ..........T.T................. CGTGCTGGATGGGCAGGCTGTCGTCCCAGAT 33031 30 96.7 31 ............T................. TGTACCACTTGCCCTTGTCCTGGGCGAGGAT 32970 30 93.3 31 .....G......T................. TGTACCACTTGCCCTTGTCCTGGGCGAGGAT 32909 30 96.7 31 ...............A.............. AGACTGCCGCGGGCGGCCCGATCGGGGCCCG 32848 30 83.3 0 .............AC......T..AT.... | ========== ====== ====== ====== ============================== =============================== ================== 9 30 94.4 31 CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Left flank : CTGCACCCACCTCTACTGGCCCGGCGCCCACCACCCCCACCTCACCACCACCATCGCCTCGGCCCACCAGACCCTGACCCACCAGGCCCTGACCCACCGGGCCAACTCGCCCTGAAGCCCGGCTCCGTGGACAGTCCGGATTCTTGGGGGCTTGAGTGCTCGGGGTCGCCGCCCGGGACGCCCTTCCCGCTGGAAGAACCCGCAGACCCGGCCAGGTGGCCCCCTCTGCGCGCCGGGAAGGCCCCGCCTGCTGTCCCGTGCGGCACGGGTAAGCCTCGGCCGGGCCCGACGTGGTGCCGACGGGGGAGGGCGAACATACGTTGGTGCCCTGTGGCAGGCTGACTGTGCCCGGAGGGGCGGGCGGCAACTGCGCCGAGCCTGCTCACACGGACTGCGTCGATGGTTGTTGCCTTTTATGTCCCGAGTTGGAGGAAATGCCCGAACTCTCGAAAGTTGCTCAGAACGGCCATCGCGCGGGGTAAAACCGCAGGTCGCCGAGC # Right flank : TTCGGCGGTTACGGCGAGGTGTGCGAGGGTCCTCGATCGGTCAACCGGCGTGGGCGCGGCGGCACTTCGGACAGCGGCACGGTGGCCAGGCCCCGCCCGCTACCGGTCCTCGGACGGGCCGTACGACGCGGCGTGGTGTCCAGGTGCGCCCGCCGTCGCGGGAGACGCGAAGGGTCATCCAGCTCACGGCTGATCTCCCAACGGCCGTGGTCCCAGAACTGCGGCTGCCGGCTCGCTGTTCCTCGCGTACTTGTAGCCGAAATGGCGAGTTGCGCGGGCCGATTGAGCTTCGCCCGTCGGCACCAACTCTCGACGCTGATCGGGTTCCGGAATGAGCTGTCGTGCATGCTGCCGCTTATCGACCATGGGTGTCCTCCCGGTGACGGATGGTGCGGTCACTCAACCCCGGGGCATCCTGGAGGGGCCACGAACCACCCGCGGACTGCATACGACGATGCGCGCAGCGCTTAGTGGTGCCGCATTCCGGACCCGTACCGCGT # Questionable array : NO Score: 3.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGACCCG # Alternate repeat : CTGCTCCCCGCGCGTGCGGGGATGAACCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28341-27945 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABELW010000033.1 Streptomyces cacaoi strain DSM 40057 X0168_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 28340 30 96.7 31 .............................T CCTGTAGATCGGCCCCGCTGACCAGCGCTGT 28279 30 96.7 31 .............................C AGATGGCCTCCGAGCTGGGAGTCTCCCCCAA 28218 30 100.0 31 .............................. TCACAAGGCTCCGGTTCACATCGCGGTTCAC 28157 30 96.7 31 .............................A GGCGCTTAGCCTCGTCGTCGGCGGTCAGCCG 28096 30 90.0 31 ...G..........T..............A GTTCTTCTGCGAGCGTGAAAGGCGCGGCCGA 28035 30 83.3 31 ...G.......A..T..A...G........ CGGGCAGGTCTTCTCGCCCTCGTGCGCAGGG 27974 30 86.7 0 ...G........TGT............... | ========== ====== ====== ====== ============================== =============================== ================== 7 30 92.9 31 GTGCTCCCCGCGCACGCGGGGTTGGTCCCG # Left flank : CTCACTCTCGGCGAATCTGCGCTGGCAGAGCGTCTTCGTCTACACCGTGCCGCCCGCGGCGAAGCAACAGGCGCTCACCGACGTCACGGCAGCCGTGGACGCGGGCGCCCTGCGCGTGGGCGAGGACGCCGGACTGCCCTTGCACCGCTTCCCCCTGGAACGCACCGCCGACGCCCACACAACACTCGAACAGGGCGTCACAGGAAAGGTCCTGCTCGACATCGTCTGACGCCCGACCCTCCCCTGCACACGTCTCCCAAGCGCTACCGTCAACTCCCGCCCGGCCTCTGTCACTTGTCACCGCGCATCCCTGGAGGAAAATGGCCCAGCACCGCCTACGAGCCGGTCCGGCAGCGGTGGAACGAGGCGGCCACGACGGAAACCGGGAGGACAACGATGAGCCGCGCTGGGCGTGTTCGCCCGACATCACCGAAAAGCCCGAGCTTGGCAAAGTGGGTAAAATCCGTGCACCGCTGAGAAGAAACCCCTGGTCGGCTCCT # Right flank : TGCACACCTCCCCGCAGATGCACGACGTGGCGGTGGCCCCCGCACGTGCGAGTCAAGCCGGAACTCCCCCGGCCCCCAGAACCCTCCCGAGCCCCCGCCCCTCCCAGCCCCACATGTAAAACGAACGTTGTACACTGGGGAGCATGGCTGGTACGCGAGCAGAGATCGTCTCCTCCGCTGAGCGGGTCTTCGACCGTCACGGCTTCGCCGGGACGGGGATGGACCGGCTGTGCGAGGCGGCGAGTGTGTCGACCCGGACGCTGTACAAGCACGTCGGCAGCAAGACCGGGCTGATGGCAGCGGTGCTGGAGTCGCGGATGTCGAGGTTCTTCGAGCGGTTCGACGTGCACAGCATCGAGGAGCTGTTTGAGGCTCTGGAGACCTGGGTCGCCGCCGAGGGAGCCAGAGGCTGCCTGTTCCTGCGTGCTCAGGGCGAGACCGGCGGGCTGACCCCGGAAGTCTCGGCGGTCGTCGCCGAGTATCACCGGCGCCTGCTGGAG # Questionable array : NO Score: 3.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGTTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9198-9592 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABELW010000044.1 Streptomyces cacaoi strain DSM 40057 X0168_44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9198 29 100.0 32 ............................. TCGCGGTAGATCTCGAAGCTGGGGTTCATGAT 9259 29 100.0 32 ............................. CCAAGGACGTCCTCGGCGTCTCACGCGCCACT 9320 29 96.6 32 .....................A....... CTCCCCAACGGACAGCTCCGCGTCCGCCGCAG 9381 29 93.1 32 .....................A......C GCCGTCAGAGGTCTTGGTGTCAGACTGCCCGG 9442 29 96.6 32 ............................C CGCATCAGCGGCCAGGGCGTGCCCCGGGCCAC 9503 29 93.1 32 ............T...............T CGGAGTTCGACTCGGCCGACACCGCCTCCGGA 9564 29 82.8 0 .....................C..ACAT. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 94.6 32 GTGCTCCCCGCACGCGCGGGGGTGGTCCG # Left flank : CCCCGGGGCGTGATCTGCCGGGGCGTCGTTGGTGCGAGGAACTGCGGTACTACCGGCTTGTGATCGCTGAGGACTGGCATGCCGAGTTGCGGCTCGACGACGCCGACAGCATGGCCACCTACTCGCGCGTCTGGCGCACTCTGCCGGAATCCGCCGTGTACGGCGCCGACGCACACAACGTGATCAATGCGGCACGGCGGGACCTGAACGCCCGCTGAAGGACCTTCGACCGGCGGGACCGCGTCGCGCTGACCGAAGGGCCGAGCCCTCAACAGCCCGACCACACCCACCGCCACCCGCACGAACGCCACCAGCACGGCCCACCACGCCCACCGCTCCGCCTGCTCCACTGCTGCCTCCCCTTGGTCATTGGCAGGACCGTACGCAGGACTGGCTGTCGGGCGTCGTGAGTTGTCCACAGGCGGGCAGGTAAGTCGTACCGGCAGCGGCGAGGTGATGCTGAACGCGTCGTTCCGCGGGTAGCGTCGCTGGTCAGGAAT # Right flank : GAAGAAAGCGCCCCGCCCGGCCGCAGTTGGCCGGGCGAGCTGCGGCGCGGGTCGAAGGACCCGGCCGGGCAGTGACCTTACGGAGCGCCCCCCACAGAGGGCTGGCCCGGGAACCCGTTCGCGAGGCACGCTCTTGTGATGGATCAAGGGCTGGCGGCGGTGCTGGGCGCGGGTGTGGGGGTCCTGGGCACTCTGGGGACTGCGGCGGTCACCTATGCGGCGGCTCGTCGGCAGACACTTGATCAGGGAAAGGTCGACGACACGAAGGCGATTCGCGGGGAGCGGCGCGACGCGTACCTTGCGTTCATCGAAGCGGCCGAACCCGTTGATTTCGTCCTGCACTCGCTCGCCCACAGCGACGAGGTTCCGGGCTCTTGTGAACGGCCGCCGAACACGGCTGTGTTGAACGAAATGGTCGAGGACATCGACTCTGCTGTGCATGCGCTCTACAAGGCGCAGGCTCGTATCGACTTGGTGGGGCCCTCGTCCGTGGTGAGTGA # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGGTGGTCCG # Alternate repeat : GTGCTCCCCGCACGCGCGGGGATGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGGTGGTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17110-17686 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABELW010000054.1 Streptomyces cacaoi strain DSM 40057 X0168_54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17110 29 96.6 32 A............................ CTCACCGCGTCGTTCGTGATCTCCAGATCACC 17171 29 93.1 32 A...........................C CAGGCGTCCGGGTCGGTGCGGCACGGCTCGCG 17232 29 93.1 32 A...........................A CGGAACGTCTTCCCCGACCCCATCGGGCCGAT 17293 29 93.1 32 .....................G......A GTCGCGATCAGGTTGGCTACCGCCGACCTGAT 17354 29 96.6 32 .....................G....... AGCGAGTTCTACCCGCTGGGCACCGGCGGCCA 17415 29 93.1 32 ............T........G....... GAGAACATGTCGATCCGGGTCTCCCTCACGGT 17476 29 96.6 32 ............................T CCCCCGTTCTGAACACGCCCGGGGCGGCCCCC C [17485] 17538 29 96.6 32 .............C............... CTCGCCGCCTCATCCGAGCCGCCGCCGGTCGC 17599 29 100.0 29 ............................. TCGAGGCCGAGCGGAAGGCCCGCGAGGGC 17657 29 75.9 0 AA.G.................C...A.AT | G [17661] ========== ====== ====== ====== ============================= ================================ ================== 10 29 93.5 32 GTGCTCCCCGCACGCGCGGGGATGGTCCG # Left flank : GATCGCTGAGCACAGCTTCCGCACGGCAGTGATCGGTTCCGTGTTCGCGATGATGGAGGGCGCCGACCCGGGCAGGGTCGCGCTGCTGTGCACCTTCCACGACACGCAGGAGACCCGGGTCGGCGACATTCCGTGGATCGGGCGGCGGTACCTCACGGCGGCGAAGAACGAGGATGTCACCCGCGACCAGGTCGCCGACGCACACCCGAAGGTTGCCGCCGGCATTCAGGCCGTAGTCGACGAGTACGAGACCGGCGACTCGATCGAGGTACTCGTCGCTCACGATGCCGACAAGCTCGAATGCATGATCCAAGGTCTTGAGTACCTGGAGCAGGGCTACCGGAACGCTCGCGAGTGGGTCGACAGCACGCGAGCGAAGCTCAAGACCCCGTCGGCGATTGCCCTTGCTGATGCCGCACAGAACATGTCCTCGGTGGAATGGCAGCGCACCTATCTGCGGTAGGTGACGCGAAGGCGCGGAAAGCTGCTGGTCAAGAAGT # Right flank : TGACGAAAGTGCCCCCGCCCGGCCATGTGTGGCCGTGCGGGGGCATTGTCAGCGTGTGAAGTCGAGTAGTGCCAGGGCGAGGGCGCCGACACCGGTCAGCGCAGCCAGGGATGGCAGGGGCCAGCGGGCCCGCTCCAGTGTGCGGAGTCGGGACTCGTGGTCGGCGAGACCGTCGCCCCGCTCGACCGCATCGAGCCGTGCGTCCTGCTGGTCGAGGTGCTGCTCGTGCTCGGTGAGCCGCTGCTCGGTCTGGTCGGTGCGCTGTACCAGCAGCGCCAGGGCGCCGTCGGTGCGGGTGAACCCGACTTCGATCGTGCGGCGGATGCGTTCCAGTTCGACGGCGACGGCGGACGGGTCGGACGGGGGTGGGGCGGTGCTCAGGGGGCGGCCTTGGTCTCCTCGTCGACGATGCCGAGGCCGAACCGGTCGAGCAGCCGCTCGACGGGCGGGAGGGCCATGACGCGGGCGAGTCCGCCCGCCACGGACACGACACACGGAAG # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCG # Alternate repeat : TGCTCCCCGCACGCGCGGGGGTGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 21483-21998 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABELW010000054.1 Streptomyces cacaoi strain DSM 40057 X0168_54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21483 29 100.0 32 ............................. ATCGCTGCACGGCTGAAGATTTCGCTCGGGGC 21544 29 96.6 32 ............................T CCCTCCGCACCGAGGAGACGTGATGTCCGTCA 21605 29 96.6 32 ............................T GTGCACAGGTGTCTCCCACGGATAGAGCGGTC 21666 29 100.0 32 ............................. GTCGACGGGTACCGCCTCGTCTGCTTCGCCCG 21727 29 100.0 32 ............................. CCCAGCAGGAGAAAGGAAGCAGATGCCCCGAT 21788 29 93.1 32 .....................G......A GCGCGCAACCCCCCCTGCGGGGGTTCGGCATT 21849 28 93.1 32 ........A............-....... AAGAAGAGGATGAGAGAGGCGCCGAGTCCGGT 21909 29 96.6 32 .....................G....... GCGGCGATCGAGCCGTATGGCATCGCGGACTC 21970 29 82.8 0 .............C.......C...A.AT | ========== ====== ====== ====== ============================= ================================ ================== 9 29 95.4 32 GTGCTCCCCGCACGCGCGGGGATGGTCCG # Left flank : TTCGGCGCCTCGCTGAAGATCCCTGCCGCCAACGGGTTCTGGATATTCGACGAACGGCTTGTGATCGCGGAGGACTGGCATGCCGAGTTGCGGCTCGACGACGCCGACAGCATCGCCACCTACTCGCGCGTCTGGCGCACTCTGCGGGAATCCGCCGTGTACGGCGCCGACGCACACAACGTGATCAATACGGCACGGCGGGAACTGAACGCCCGCTGAAGGGTCTTCGGCTGGCGGGACGGCGGCGCGCTGACCGAAGGGCCGAGCCCTCAACAGGCCGACCACGCCCACCGCTACCTGTACGAACGCCACCAGCACGGCCCACCGCGCCCACCGCTCCGCCTGCTCCACTACTGCCTCCTCGGTCGTTGGCAGGACCGTACGCAGGACTGGCTGTCGGGCGTCGTGAGTTGTCCACAGGCGGGCAGGTAAGTCGTACCGGCAGCGGCGAGGTGATGCTGAATACGCCATTCCGCGAGTAACGTCGCTGGTCAGGAAGT # Right flank : TGCCGAAATCGCCCCCGCCCGGCCAGGTGCGCCCGGCCACGTGCGCCCGGGCAGGGGCATTCAGCCAGCGAAGCCGAGTAGTCCCAAGGCGAAGGCGCTCCCAGCGAGGGCACGAGGCAGGGCGCGGTATGCGGATGCTCGCCGCGCCGGGGGCGGAGGGGAGACGGCGCCGACCCGCACCCACAAGGCCGTCTCCCGCCGCGTCCCCCCTCGGCTGAGCGGAGCGCCGGGCAGGGGCGCGTCCAGCCGAGGCGGCACACCCGGCAGGAGCCTCATCCCCGCCGGGGCGGCATACCCGGCAAGAACCCGTCCCAGGCGCGCGACACACCCGGCAGGAGCCCCATCCCAGGCGCGCGGCATACCCAGCAGGAGCCCCATCCCAGGCGGGCGAGCAAAACCCGGCAAGAGCCTCATCCCAGGCGCGCGGCACACCCAGCAGGAGCCCCATCCCAGGCGAGCGGCAGAACCCGGCAGGAGCCTCACCCCAGGTGGGCGGCATG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCG # Alternate repeat : GTGCTCCCCGCACGCGCGGGGGTGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18431-19129 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABELW010000068.1 Streptomyces cacaoi strain DSM 40057 X0168_68, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18431 29 100.0 32 ............................. CACCCGCCACTGGAGATCGCCCAGCTCGGTGG 18492 29 100.0 32 ............................. GCCGCCGCTGCTGCTGCGGCCGGTGTCTCCGA 18553 29 100.0 32 ............................. GAGGAACCGGCTCCGAGCTTGTCGGCGACGCT 18614 29 100.0 32 ............................. TCCACCTGGACGCTCGGGGAGAGCTGCACCTC 18675 29 100.0 32 ............................. GGCTGAGCGTGAGACCCCGAGCTGTTTGGCGA 18736 29 96.6 32 ............................G CCGGCCAGCGGCACCGTGACGTAGGGGCTCTG 18797 29 100.0 32 ............................. TGCGGGAGCGGGGCCACGCCCTACCCGGGTCC 18858 29 100.0 32 ............................. CCTGGGTCTGCCACTCGTGCTTGCGGCCGACG 18919 29 100.0 32 ............................. CAGGCAGACCTCATAGACTATGTTCCCTTCCC 18980 29 93.1 32 ........T.....G.............. ATGTCTTCACCATGCGGCCACACCAAGGCCGA 19041 29 100.0 32 ............................. GACCCGATCTCGAAGATTGCGCATCATGAGGC 19102 28 75.9 0 .A.T.......C.....A...G.A.-... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.1 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CCGGCGGAGGAGCGAACACCTAGTCGCGGCCGCAGCCCCGAGAGCCCGTGATGCACAGGTAGAGGCCAGAAGAGCCCGCGTTGAGGTTTGATCCACGAGACCGGGTGCCCCGGCTCCCGCTCGTGTAGGGAGTCCTGTCTGCTGCCGAGGCGGCACCCCGATGCGTCTCCGCACCCTTGCGGTCACCCCTGCCTTCCGTAGGGTTGAGATGGCCAGGGTGAGGCAAGTTGTATACGAAACGCCAACTGGGTCCTTCGGACAGGTGTGTCGGAGTCACGCACGCCAGGGGAAGCGGAACGAGTCCCCGGGTGCTCCGGCGCCCGGACCGGGCTTTGCCGTTGCGGAGGGCGAAGAGGACGGGGCACGTATGTTGGAGGTTGCTGTACCCGCGATGTTGCGGCGGCCGCTGACCCTTGTGTGACTGGATGGGAGGAATGCCTGAATCCCCGAAGGTTGCTCGAAACGGCCTTCCGGCCGGATAAACCCGCAGCTCACCGAGC # Right flank : CAGGCCCCCGGCTCAGGCCGGGTCCTCCAGGGCCTCGATGAGGAGATGGGACAGGCGGCGGAACTCCTCGGCGTTGGCTCTGTCGAACTTTTCCAGTGCCGGGGCCAGTCGGGCCTCGATCTGGGTGAAGGTCTCGTCGATCACCTTGTGTCCCTTGGGCGTGAGGTGGTTGTCCATCACGCGGCCCCGGGCCGGGGAGCGCTCGACCAGGCCCTCCTCCTGCAAGGTCCGGATGAGACGGCTGACGGCCTGCGGTGTGTGGACCGCGGCGCGCGCCAGCTCTGAAGCGGAGGCGCCGGGTGTCCGCTTCAGTTCGCGCAGCACCGTCCACTGCCCGAGGGTGAGCCCCAGTGGGTGGATGACCTGCTCGATCCGGTCGGCGAAGTGCTGACGGATGATCCTGGACAGCGCACCGATTTCGATCCCCTGCGGCAGCGGGTCGCCCGAGTTCTTCATCTTTGACAGTGTACTCGCCGCGTTCTATATTGAATCGCAGTTCA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //