Array 1 78-376 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERIW010000007.1 Helicobacter cinaedi strain DSM 5359 NODE_7_length_99069_cov_143.247414, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 78 36 100.0 30 .................................... TGTGTGTCCCATGTAATTGGAATTTTGCCG 144 36 100.0 30 .................................... TGATTTGATTATCGCGTTAATACTTTTTGG 210 36 100.0 30 .................................... ACTGCTAAACGCATAGGTGTTCAGCTCTAC 276 36 100.0 30 .................................... ACTTGCCATAAAGGGCTGTTGTTCTTTTAT 342 34 86.1 0 ...................--.A.........T.T. | T [371] ========== ====== ====== ====== ==================================== ============================== ================== 5 36 97.2 30 GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Left flank : TAGAGTTGCGTGTTTTAGGATATTTCAAGCTTTGAAAACGCTCAAAGCACACACTAGAGCCGACTTGGAAAAGTCAGG # Right flank : CACTCTAATGCTTTTACTTGTTGTATCAAAGTTTGTCTATCTTATGTCATTACTAGGGCTTTGCCAAAGTATATAATCCACACAAACAAAAATCCTGTTATTTTTCTACAAAGTCTTGTAAGATTCTTAAATTTAGCTAGAATGCTGTGTAAAAAAATGACGTATTTAAAAGGAAATAGATGAATAACTTCAGCAAAATCGGCTTTGTTTTGGCGACTTTGGGTAGCTCCATAGGCTTGGGACATATTTGGCGGTTTCCCTATATGGCGGGGGAAAATGGCGGTGGAGCGTTTGTTATCTTTTATCTTATCTTAGCCATTCTCATTGGTGCGTCTATGCTGATGGCGGAAATGCTCCTTGGCAATAAGGCCAGAAGCAATCCTTTGGATAATTTTACTATCCTTAATAATCTTAATAAACTTCCACCAAACACACCCACACAAGATCACAATACCACAGATTCTAAGTCTGGCTCTTCACTTATGTGGCTTGGCTTTTCT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 17455-15434 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERIW010000019.1 Helicobacter cinaedi strain DSM 5359 NODE_19_length_32637_cov_93.941677, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 17454 36 100.0 30 .................................... TTAAAACTTTATTTGAAATATAGAATTACT 17388 36 100.0 30 .................................... ATTAGAAAAAGAAAACTACGAACGACTTTT 17322 36 100.0 30 .................................... GCTTAGCATACTTGCTCCAATCACCGCTCC 17256 36 100.0 30 .................................... ATAAGAAACAGCATTCCATTACACTTTAGA 17190 36 100.0 31 .................................... TAAAAATTTCAAAAAGGAGAATCTAAATTAT 17123 36 100.0 30 .................................... GATGAAGTTATCGACAAAAGCAAATCAAAA 17057 36 100.0 30 .................................... AGGAAGCGGTATATATCCCCACGAAATGTA 16991 36 100.0 30 .................................... GATACACTCACACATTCCACACCTAGAATC 16925 36 100.0 30 .................................... CTTCCAAGAAAATGAAAAGATTCTCCAATT 16859 36 100.0 30 .................................... AGCGACATCGGGGATTGCACCGAGTCCAAG 16793 36 100.0 31 .................................... TTTAGACATCCGCGACCTCCGCCTTGCTTCT 16726 36 100.0 30 .................................... ATGCAAAACAACATTAACTCTTTGATCAGA 16660 36 100.0 30 .................................... GAGGTTCTTTTTGCAAAAAAACAAATCGGC 16594 36 100.0 30 .................................... AAGCGCAGGCATTGTATCTGCCCTTAATTT 16528 36 100.0 30 .................................... GCTAGTGATTGTTTGACTCGCAGGACTCCC 16462 36 100.0 30 .................................... ACGTACGACTACGACTTGGACATTGACAAT 16396 36 100.0 31 .................................... GTCCCACCTGTATTTTTTAGTAGTAACATAG 16329 36 100.0 30 .................................... ACAAAGTTACTATAATGCTTATCAAAAGGA 16263 36 100.0 30 .................................... AAATCATTCTGATGGCACATTAAAGCTTAG 16197 36 100.0 31 .................................... CAAAATCCCCGCTGATGTCCTCCCATATCTC 16130 36 100.0 30 .................................... ATAGGAGCAAGAGACTCAAATAAATCCTCT 16064 36 100.0 30 .................................... CTATTTGAGAATTCTACTCGTAATGATTTT 15998 36 100.0 30 .................................... ATATGTCTCATCATTTATAAATGTGCGTAT 15932 36 100.0 30 .................................... ATGACACAAATAATTATAATAGCGGGATTA 15866 36 100.0 31 .................................... CACAACATCGGGGATAGCACCAAGTCCAAAA 15799 36 100.0 30 .................................... GCCGAAATCGCTCATCTTATTGGAATTTGT 15733 36 100.0 30 .................................... CAAGAGCTTTATGCTACAAAAGACAACAAA 15667 36 100.0 30 .................................... TATCGCCGCCGAAGGCGTCGTTTTTCTTTT 15601 36 100.0 30 .................................... CATCATTGGTTCGTCCCTTATCGTCTTTTA 15535 36 100.0 30 .................................... CCACCGACACTTCCATTACCGGCTTTTCTA 15469 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.9 30 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : CTTTTTTATGATGCAATTTAGCGTGTATATGAAAATATGCAAAGGGTTAAGCTCGGCAAAAAGCTCTCTAAATGTTGTAAAAAAGGTGCTTCCACCTTATGGTAATGTCCGCGCACTTATCATCACAGAAAGACAATTCGACAATATAGAAATATTATTAGGAAACCCATCATTTAATGAGAATGTTAATGAAGATAAAAATCTTGTGCTATTTGACTTTGACGAAAATGCGGGTGATTACCGCTATGGTATGGAGTATCAAAAACAAGAAGAATTGAATACAACTACTACACAACCAAAACAAAAAATCAAAAATAGGCAACCAAGCCTATTTGAATTCTAGGGTTTTGATAGGGATATGATTTACCCTGCGGAAGACCCCTTACTCCCTTATTTTAGTCCCTTCTTAAACTTCTATGTCGCGAATTATAAAGGATTTCAGGTAATTTCCAGCTTAAAATCCTTTGAAATCCCTATCTATAGGCACCAACAGAGAGCCT # Right flank : TAGTGAGATTGAAGCCAATTGGATACGAATAATGGCAGAGCTAGAGACACAAGATGGCGATAGTAACACTTCATAGAGTGTGGTTGAGTCAAAGCAGAATTTTAATGCCCTAAATGACTTTAAAAGTTATGCTGATGAAAATCAAAAGCAAACAACAAATGGCTTTTCATTTGGCTCTGCGTTTTCTAAATTGAAAGAAAAGGGCATTGAAGCAAAAGAAGCCATTGAAAAAAAGCAGAATGCTAGATAAGGTTAAAGAAAAAACAAGTGAGCTGACAAACAAAGGACTTGAAAAAGGCAAAGGATTGATTGAATCTCAAAAACAAAAAGGGGCTAACAATGAGCGAGATTAAGAATAAAACATTTGAAGATAAGTACAATTTGTTGGGCAATACACTGCTAAAAGTTAATGATATTTTATCTAGTGATTTTAGGAGAGAGCTAGAATCTTTGAGTCCTTCTTCTATGAGTATGGATAAAAAACTTTTATTGTTTTCGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 236-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERIW010000128.1 Helicobacter cinaedi strain DSM 5359 NODE_1631_length_271_cov_0.757732, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 235 30 100.0 36 .............................. CGGAGAGAGCATGGCGCCAGAGGTAGATAACGGGGA 169 30 100.0 36 .............................. TAAAAATGCAAAGCTAATCAAGCAAAAAGTATCAAG 103 30 100.0 36 .............................. GAATAATCTTTTCAGATCTATCAAATTTAAACTCAT 37 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 36 GTTTCAACACAAACATTGTCATTAGCAAAC # Left flank : CCCTTTCTGTTTTTTCATCAAATATATCGCAGAAG # Right flank : CTTTAAGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAACATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //