Array 1 394-1098 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEJR010000044.1 Bifidobacterium sp. SO1 Contig_44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 394 29 93.1 32 ..............A.............T AGATCGCTGACACGCCGCCACCACGCGTACCA 455 28 82.8 32 ...........-ACA.............T TTTCGTTTTCGAACATATGAGCAGGGCGGTCA C [470] 516 29 86.2 32 ...........GACA.............. GTGTCGGTGCTGACGCCGCCGACCCGGTAGTG 577 29 89.7 34 .............CA.............A CACGCACGAAGGACAACCGGATCATCGGTGTCGG C [579] 641 29 93.1 32 ..........T...T.............. TTCATATGAAGGTCGCCCGAATCGTCCGGGTC 702 29 93.1 32 ........................C...G CCTGGATCTGGCAAGTCCGCCGCTGGGGTAGT 763 29 100.0 32 ............................. TACATGCCACCGTTGCACCCATCATCGCCCCG 824 29 100.0 32 ............................. TACATGCCACCGTTGCACCCATCATCGCCCCG 885 29 100.0 32 ............................. CGTCCGCCATGAAGCTCCAACCGACGCCAATG 946 29 86.2 34 ............T.T.........C...A ACGGGGATGATCGTCGCGACGGATACGACGACCT 1009 28 89.7 33 ...........-.C..........C.... TCATTGGTGTCCAAAACCTTGGTGCTGTTCTTG 1070 29 82.8 0 ..T...........T.........T..TG | ========== ====== ====== ====== ============================= ================================== ================== 12 29 91.4 33 ATCGACCCCACACACGTGGGGATGAACCC # Left flank : TCCGTCACGCCGTAAGGAGTACGGCTCCCCAACGTCAGCCAAGCATCCCGTGAGGAACGGGAGAACGGTTGAAACGAGGGTCAAGAACAAGACTAGCGGAATAAAACACTAGACAAGTTCATACTCTCCGTAGGCAACGTATCCGCAAAAGTCCGCGAGCGCCTATGGCGAAGGATCGGTCGGACTATCCATGATGGGCGTGCAACGATGGCTTGGTACACACAAAGCCAGTTACATATACTCGATCATCATGGCAAACGAACACCTATACAGCTAGACGGAACGACGTTAATGTCCAAGCCTCTCGGCAAGGAGGACAATCCGACCAGCCAAGAAGTATCCAATTTGCAAAAACAGCCCCACGATGGGCATGAAAAGCTTGAAAACTAAACGA # Right flank : GCACAAAGCTGAGGGTTTTTGTTTCTGACGTGATTTTTTGTTATACTGTATTCGTCCACAGTTTTGAAGGTTCATGATGACATCACCGACTTTATCGCAAGCAAAACCAACCCCTAATCATGTGGTTGACTACTCACCATCTACAACGATCACCACTCCGATGCCGCCTGTAAGGGTGACTGGTTCCACATTGAGTCGTAAGTCGTTGAGGGCTTTGCAGCGTCGTGAACAGCGATTCCGTAAGCGTATGTTTTATGGGATGGCTGGTGTTGCGATTGTTTACGCGATCGGCGGGATTGTGTTTGCCTTGTTGTCGTCGTCTGTGCTTTGGTTGCGCGTGGTGTTGATTCTAATGTTCGTTGGCGCTGCTGTTTGCAGCGTGGTCCCGTCTGCTGTTTATGCGAGCAGGAGAACGATTCTTGTTAAGGAGGTTTAGTTTTGGCCGTTAATGTCACACAGAAAGATGAGACGTTGCACATGGTGATGTCGGAGATTCAACA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGACCCCACACACGTGGGGATGAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.60,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 116268-115875 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEJR010000007.1 Bifidobacterium sp. SO1 Contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 116267 29 82.8 32 ...A.......A.GC.............C AACAGGACATGATCGCGGACGGCAACGCCAAA 116206 29 82.8 32 ...A.......A.GC.............C TGACTCTTGCCGGTGTTGGACGCACCATATAT 116145 29 93.1 31 ...........A................T CGGTCAAGGTCGGAGCGGTGGCCCTGCTTGG 116085 29 100.0 32 ............................. TTGAGGGTTGATCGTCTCGTATGGTGAGATGA 116024 29 100.0 30 ............................. ATCGCCGGTGTGAACAACGTATGCGAACAG 115965 29 82.8 33 ...........ATGC.............C TACAACATGTACATGAGCCTCATCAGTGGTCTG 115903 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 91.6 32 ACCTGCCCCGCGCATGCGGGGATGAACCG # Left flank : GCGAACGGCACACGAGGCACGATCGTCGGCGAGGATCACGGGTATCCGGTCATCCGATTCGACGATGGCGGTATGGCGACCGTATTCCCGCGCCGCATCTACGTGTGCCATCCGAAGGCGGAGAAGAACAAGGAGACCGGCCTGTATGAGATCAGGAACCATCCGATCGGCCTGTACGGTCAGCTGCCCTTCGAACCCGGATATGCGACCACCATCCACAAGGCGCAGGGACTCACCTGCGAGAAACTGCATGTGATCTTGGGCGAGCAGGATCTGTTCGCGGAAGGACAGCTGTACACGATCCTCAGCCGCGCCACCACGCTCGCCGGACTCACCTTGGATCGTCCGCTTCGCAAAGCGGATGTGCGAATCAGTCTGACAGCGCAACGATTCCTAGATCGGCTACGCGAACGGAATCGAAAGGAATCCGACTGACCGAACCGAAGATTCCTCTCAAATTCCGGATTGCGAAACGTTGGGATTCCAACGATCCGACCAGT # Right flank : TGTCCAGCGCTGGGAGCATGACCGGATGCTACCGCCTTCTTTGGCGAAGGATCTGCATGCACTCGAATTTCTCCGCGATCGTCAGGTCGAGGCGATCGTCAGGGAGCACGACGATGGCCCGAACCTCGTGCCGCGCATCGATCAGACCGATGATGAATGGCCGGCGGCGCAATGGCGGCGCATGGTTGCACTACGCGCGCACGAGCGGACAGGACGCAGAATCGAATGGATCGACAGACGGAACAAGGGATGATCGCGAATCATGACGAATCCGCCCCCGTACATACGGGGATGAACCGACGCTCATCAGGTACTGTACGTCGTCCATATGTTCATAGTATCCGTCTTCGTTTTCAGTGCCTTTCCCGTACTCGTATTCCGATCAGCTTCCCTGACGCATATGGTTGCGTATGGAGAATTTTCGTGATCTGATCATTCTGGACTGCGTGAGGCGCGGTAACGTGCTGCGCCTGTTTCTGGGCGACCCTGCGTTGAGGTCA # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.58, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTGCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : ACCAGCCCCGCACGCGCGGGGATGAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 120781-117851 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEJR010000007.1 Bifidobacterium sp. SO1 Contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================== ================== 120780 29 86.2 33 ...T........TG..............A TGGCCGTGCGTGAGTCCGACGGCAAGGCTCCCC 120718 29 93.1 32 ...T........................C GGGGGCTGAACCCCGGCGGGCATGCGCATGCG 120657 28 86.2 34 ..T........G........-.......C CCAGCATCGAGGAAAACAAGATGCTGCTCGGAGA 120595 29 100.0 32 ............................. TCGGGGCTTTCGTTCCGTGCGGACTCCATCGA 120534 29 82.8 32 ...T....T..G............CC... AGAGATGATGCGGGACTTCCGAAAACCATGAT 120473 29 79.3 33 .......T......TA.......T.C..C TCCTTGTGACCGGGCTGAAGCCCCACGAGTGGT 120412 29 75.9 32 ..TT.T...A....T.....A.......G TCGGTGAACCATGTGGCCGGTGCGGTTGCGGT 120351 29 93.1 32 .......................T....C CACGGGAGATTCGGACTATCAGACTGTGGCGT 120291 29 69.0 32 ...T..T..A.GT.T....A.....C..A AGCCACGGCGTCGCACCAAGTTCAACGGCGCG 120230 29 89.7 32 ...........G..TA............. TGGATCGACGACGCGTTCACCGCGCTCGTGCT 120169 29 89.7 32 ..............T........A....G GTGATGCGGGTCGGGTATCTGTCGCGTAAGGG 120108 29 86.2 29 ...T........T...........G...G CGTGGGGTATGGGTGATTGAAACCCATGA 120050 29 79.3 32 ...G........T.T.....A..A....C AGCAGGTCGGTCAGTTCCATGCGCCATGACTG 119989 29 93.1 29 .............G..............G CGCAGCACGGCCAAGACCACGGTCAAATC 119931 29 89.7 32 ..............T........A....G GTGTCGCCGTTCTTCTTCCATGTGATTGCGGG 119870 29 72.4 31 C..T.......G....A.....CC.C..A GGACAGGAACCAGTTTTCTCCACCTTCATGA 119811 29 82.8 32 ...T.........CT........A....G TGGAAGAAGTGTATCCGATGCTTGAGCTGGAT 119750 29 82.8 36 ............T.T....A.....C..C CCCCCCGGCATCCGTCAGCATCTTCTTCATGGTGCT 119685 29 86.2 32 ........T...TG..............C TGCCAGATGTTATGCCGTGACTGTAATCTCAG 119624 29 86.2 32 ...T..........T..........C..G TTCGATAAACGCGTTCGCGCGATCGAGGAGAA 119563 29 86.2 58 ....A...T.....T.............C TACTTTTCCTGTATGTGTAGGGGTACTCCCATGCGCATGAGCGTACTGATGTGATCAA 119476 29 79.3 33 ....ATT.....T.T.............G CCAAGAGCGTTCGCCGCATGGTTTCGCCGACCA 119414 29 93.1 32 ...........G................G ACCTCCCGTGCGGCCGGTAGAACCACAGTCTC 119353 29 86.2 32 ...T......TG................G TGGTAGGCTCGCCCGCGTCCGCCGTTTATACG 119292 29 86.2 33 ...T........T..........T....C CATGAGCAAACCACCGGACTCCATCAGCAGCGA 119231 29 86.2 32 ..............T........A.T..C GTGTGCGGCAGGGAGAACGCGTCTCCCTCGCC 119170 29 86.2 32 .C.T..........T.............C TGATCCCATCCATCAGGAATTGGTGTATGTGG 119109 29 75.9 34 CC..........TCTA............G CGGACCCCAACCACATCCGGGACATCGCCGTATA 119046 29 93.1 32 ...T.........G............... ATGGTCTGGAGATCGGATGCATCCAGAAACTG 118985 29 100.0 32 ............................. ATAAGGTGCACCGCGCCCCGCGGAGCACCGGT 118924 29 79.3 32 .............CT.....A..T.G..G AACGCCAGCGAGATGACCGCAGGGTCGTCTCC 118863 29 89.7 33 ............T.T.............C AGGACCCGCGCACGACGGGTGAGCCGATCGATG 118801 29 86.2 31 ..A...........T..........T..C CGTCAAAAGTCGACAAGTCGGCGAGCGCTCG 118741 29 89.7 32 ...T.......G..T.............. TGTGTTGGACGAAACCGACGATGCATCGTGAC 118680 29 86.2 33 ..............T.T......T....C CATGAGCAAGCCACCGGACTCCATCGGCAGCGA 118619 29 86.2 33 ......T....T...........A....A CATTACCGGCGAGCCAGGCAACGACTTGCAGCG 118557 29 82.8 33 ...T..............A.....CC..C CATCATGCGCACCATCAGGATCGCCAGACTATG 118495 29 93.1 32 .................A..........G GCACGGGCACGCCAGACTCGAGCATTCTACAC 118434 28 75.9 32 ...T.TT....G..T.....-.......C GTGTCCTTTAGCTCGCACCGTTTGTGGTGCCT 118374 29 79.3 32 .C.........G..T..T.....A....G CTGTTCCCCCAGGACACCCCCTCGGTAACGTT 118313 29 86.2 32 .........ATG................G TGGAAGGCGATGACCCTGTCCTCGAGCTGGAT 118252 29 82.8 32 ...T........T.T.....A.......C TCGACATCGAGACCGCCGTTTACGCATACGAC 118191 29 86.2 34 ..............T........T.G..C CCAGAGGTTCTCTATCTGTTGCCTGATCTGTTTC 118128 29 89.7 32 .C.....................A....C ATCTCGACGGCAGCGAAGTCGATGACATCTTC 118067 28 86.2 37 .......T......T.....-.......C CCCCCCAGATTCTTATGAATTCCGATGGTGCCTATGC 118002 29 82.8 32 .........AT.T..........A....C GGGACTTTCCCGTTCTTACCGTGACTTCTATG 117941 29 86.2 33 ...T..........T...........T.G GCGTCGCGGATCTATTGACCGATTCCGTTAGCA 117879 29 82.8 0 ...T.......G..T.........TT... | ========== ====== ====== ====== ============================= ========================================================== ================== 48 29 85.6 33 ATCCGCCCCGCACACGCGGGGATGAACCT # Left flank : ACAGGCGGAGACGACCGGCTATGATCGCTTCCTTGACTCCATCCGGTCGGGCATGAGCCTCCGTTTCAAGGTGGTCTGCGCGCCCGTGAAGACCGTGGACGGGCGCAAGATCCCGTTGCATGATCGCGGGGAGCGGCGCGCATGGCTGGAACGCACGCTCCAGCGTCATGGGGCCGATCTTCGCATGGCGGACATCGGCTCCCCGGAACGCATCGCCTTCACCCGCAAAGGCGGGACGGTCGTGCTCACCGGCATCACCATGCAGGGCATCCTCCACGTGGATGACGCGGACGGGGTGCGCCGCATGCTCACCGAGGGGATCGGCACCGGCCGCGCATACGGCATGGGCATGATCACCGTCAGCCGCTAGTCGCGGATTCTTTTCCACGCCCCACGCATGGGCGAGACGCTTGAAAACCGAAAACCCACACTGATCGAATCGAAGAAAAGCCGGCAATCCACCACAAACGGAACACCGGCTTTTCAACAATTCGGCCTGT # Right flank : CACTGGTAATGCTCATGATCGGTTTTGCCACACTTACCAGCCCCGTTTCGACGGGGATGTTTCTTCTTTCTGACGCATGTATCGGGTATGGATATTGAGAATCTTACCGACAATGATTTTCCCGCCGACGCGCTGCATGCGCTTCGCTCCGATGCGAGTCTGCTGATCACCGGTCCGGCGGGCTGTGGGAAAAGCACGCTCATCCGCTACTGGCAGCGGCACGACAATCCGAAGAACGTGTGGACCGTGGCCCCCACCGGAATCGCCGCCCGCAACCTCGAACAGGGAGGGGATCTGCTCGCCCAGACCATCCACTCCTTCCTCAAAGTGGGAGCCTACGCGACCCCCGAACGCATGCGGGAAGCCGGACAGCGGGCGCGCGGAGAACAGAAAAGAATCATCGGTATTCTGGATACGCTGATCGTCGACGAGATCAGCATGGTGCGCGCCGACCTCATGGACGGGCTCGACCTGTATCTTCGCGCCGCCCGCAACCTGCC # Questionable array : NO Score: 4.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.28, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.06, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCGCCCCGCACACGCGGGGATGAACCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [55-59] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //