Array 1 1069156-1070710 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017974.1 Salmonella enterica subsp. enterica serovar Montevideo str. CDC 07-0954 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1069156 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 1069217 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 1069278 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 1069339 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 1069400 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 1069461 29 96.6 32 ............................A TGCCATCGCCGAGGGAGGGCCTCCAGATCATC 1069522 29 100.0 32 ............................. CCGTCGCTGACGAACTGACTTTTCTTCATCTC 1069583 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 1069644 29 96.6 32 ............................A CATTGGGCACCGTACCGTTGCGAATACGTCGC 1069705 29 100.0 32 ............................. CCAGTAATCACAGACTTTCTCCGTGTCTTCAC 1069766 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 1069827 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 1069888 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 1069950 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 1070011 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 1070072 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 1070134 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 1070195 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 1070256 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 1070317 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 1070378 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 1070439 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 1070500 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 1070561 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 1070622 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 1070683 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1086846-1087546 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017974.1 Salmonella enterica subsp. enterica serovar Montevideo str. CDC 07-0954 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1086846 29 100.0 32 ............................. TGTCCAGGCGATTTCCTGGAACCTGGCATTGC 1086907 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 1086968 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 1087029 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 1087090 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 1087151 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 1087212 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 1087273 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 1087334 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 1087395 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 1087456 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 1087517 29 93.1 0 A...........T................ | A [1087543] ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //