Array 1 772-972 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOKF010000013.1 Bacteroides fragilis strain MSK.16.58 NODE_13_length_120990_cov_171.539, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 772 47 95.7 30 ...A......A.................................... GATTCGAAGATATGCAAATGTAGCAAGTAT 849 47 100.0 30 ............................................... TTCACGGACGATATCCGCGTCGATGCCCCG 926 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 3 47 98.6 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TTCAGGGGCGGAAAGAACAAAGCTTTGGCTTCGAAAAGACTTGTTATTTGGAAACAAAAGGTTTGATTTAACAGAGGGTTAAATCAAGTTATAGGAAGAGGAAAAACAAAAGGAGAGAAAGTATTGAGGATGAAGAAAATAGAGAAAAAGGGAGTATTTTCTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : CTTACCCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 118380-118527 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOKF010000006.1 Bacteroides fragilis strain MSK.16.58 NODE_6_length_230310_cov_171.006, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 118380 26 96.2 35 ...................T...... CATGATGAAGGTACATAACTCAAGCCACAAAAAGC 118441 26 100.0 35 .......................... CCTTGCTTATCAAACAAATACTTAGTATTTTTGTT 118502 26 96.2 0 ........................A. | ========== ====== ====== ====== ========================== =================================== ================== 3 26 97.5 36 TCAAATTCACAATATATTGGGAATTT # Left flank : TACCGACACCGGGGAAGTAAACTCCATACTCAGGCTGTCGGACTATGGGAGGAAGGGAACGACGGTATGGAAACTGATTGCCAACACTTGCTGGAGCGACATCGGAGCCAAAGGAAGATACCTGATAGCGGCGCTAAACAAGACGAAAAGAAGGTAGCAGAGAGTGTCAGTCCCCTATTTGTAGTTGACAAAAAAGCAAGTATACAGGCTTTTGACCAGAAAAGGATTCAGTGAAACAAAGAAGTAAAAAGTGTGCTTAACGAACTAAAACACAGTGTTTTTAAAGCACAAGATTTCTCTCGCCCAAAGCTTTGTTTTAACGCTACGTTAAAGCTTGTTCCTTAAATGCAAATAGCAAGTGTTTTCAATGCAAAAGGCTTGTTATTTGCACACAAGAATAAAATAACGGAGAAATGGCGTTAACAATGTTAATTGAGAAACACTCTACAAACAAAAAGAAATCTCTGTCATTCTAAAATCAAAAGTACAAATAGCCGTAA # Right flank : TGAAACAAATTGGAATACAGATTCGCCAACGAAGAAAAATGTTGGGTATAAATCAGCAAACACTTGCCGATTTAGCACAAATCAGTATCAATACTATAACAAAAATTGAAAATGGAGAAATAAATATTAATTTTCAAAAGCTCTATGCCATATTGGAGGTATTAGGATTAGAACTTTCTCTGAAAATTAAAAATAAGGAGGGATATCTATGAGACAAGGAGTCGTATACTTGAATAAAGAACGGGTAGGCATTATTACGGAATTATCTTCTAACGAATATAAATTTCGCTATGATGACGAATATTTCAATGATCCATCAAAGCCCTCCATAAGCCTGACATTGACAAAACAACAACAGGAATATACTTCCCATTATCTATTTCCTTTTTTTGCCAACATGCTGTCAGAAGGGCACAACCGCATCGTTCAGGCAAGATTATTGCAGATTGATGAAAAAGATGATTTTGGTATTTTATTAGCTACAGCACATACCGACACGG # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAAATTCACAATATATTGGGAATTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.92%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //