Array 1 2567082-2567289 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI535631.1 Klebsiella oxytoca MGH 28 addUR-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2567082 28 100.0 32 ............................ ATCCCCACGGAGGCCAGCGCCTCCCGGCTGTT 2567142 28 100.0 32 ............................ CATCATGGCATCCCAGGCGCCGCTGGCAGCAT 2567202 28 100.0 32 ............................ GGATGACCGATCGCATCGGCATTTTTGAATTG 2567262 28 82.1 0 ............T.C.....T.C..T.. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 95.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CATCAGCAGCATGCTGGTGGCGAAAGGTCTGCCGGGCTTTATCGCTTATGGGGTTTTAGCTGGAGAAGTGGTTGCGCCATGTCTGCTGATTGTGGGGATCCTGACGCGCCCTGCGGCGCTGGTGCTGGCATTCACGATGGTTGTGGCCTGGCTGATGGTCGGGACGGGTAAAACCTTCGCGCTGGATGCGGTAGGCGCGTGGGCGATTGAGAGTCTGGTCTACTTCTTTGTTGGCGCGCTGGCGATTGCCTTCCTCGGGGCAGGCCGATATTCCATTGGCGGAAACTCGGCCTGGCGGTAAGTGCACCAGGATTTTCTGCCTCACCCTGGCCACATCCTGTTTGCCGGGGTGTCGCCGCTCGTTTTTCAGACCCTTTTTTGGGGAGGGTATTTTAAGATCTTGATTTTTTAATATTTTCATTGTTGTCACAAAAAAAGGGTAAAAGGGCCTTTTATTGATTATTGCATGATAAAACACTAAGGCAGGTGCGCGGGCTAGT # Right flank : AGAGCCATGCTACCCGACGATTACCGCGTAGCATGGCCAGCAACAACATTAAGCCAGTACCAAATCTCCCTGCGGCTGGCAGGAGCAGGCCAGCACGTAGCCTTCAGCGATTTCCGCATCGGTTAACGTCATGGTGCTGCTGACGGTATATTCACCGGAAACCACTTTCGTTTTGCAGCAGCCGCAAACGCCCGCGCGGCAGGCGACGGTAACCGGCACCTTATTGCTTTCCAGCGCTTCGAGCAGCGTGGTGCCGACCGGGGCATAAAACGTTTTCGCCGGCTGCAGTTTGGTGAACTTCAGACCGCTGGTGGCCGCGACGGCGACTGGCGTAAAGAACTGCTCTTTAAAGAAGCGCGTCGCGCCCAGCGCTTTCACTTCCTGCTCGACGAGATCCATATACGGCGCCGGACCGCAGGTCATCACGGTGCGCGATGCCAGATCCGGCACGCTTTGCAGTAGTTCAGTCGTTAAACGTCCTGCCACGAAACCGTGGGTAG # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2580549-2582498 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI535631.1 Klebsiella oxytoca MGH 28 addUR-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2580549 28 100.0 32 ............................ CTCATAGCGTACAAACGCGAGGAATCGACGCT 2580609 28 100.0 32 ............................ TGAATATATTAAACCCTACGCTAGACAAATTA 2580669 28 100.0 32 ............................ ACGTAATGAGCGCTCTGGCGGAAATGGAAAGA 2580729 28 100.0 32 ............................ TACAAAAATTCCTTATAATCCGTCTACTAATG 2580789 28 100.0 32 ............................ GAATTAACAAGAAGTTTATGGACGCGAGCCTA 2580849 28 100.0 32 ............................ TTTAATGTTAAAGCGCTTGCTGTTGCATAGCT 2580909 28 100.0 32 ............................ ATTTCACAATTAGGCGGTAATTCAATTTCTAG 2580969 28 100.0 32 ............................ ATTCGGTGACCGCGTTTCGGAATCGTTGTCAG 2581029 28 100.0 32 ............................ CCGACCGCGCCCAGCATGCCGCCGCCCTGATA 2581089 28 100.0 32 ............................ TCATAAAAAAGGCCCGCATTTGCGAGCCTGTT 2581149 28 100.0 32 ............................ GGAAAATATGACGGTATAGGTTTTGTATTAAC 2581209 28 100.0 32 ............................ ACGTACATTACAAAACAGGGCGGCGTGATGAC 2581269 28 100.0 32 ............................ GTAATGCGCCGGCGGTCGCGCTTGCGCATAAA 2581329 28 100.0 32 ............................ GATGCTATAGCCGCAATGAATACCGGAAAATA 2581389 28 100.0 32 ............................ TTTAATAATGATGTGTAGGCCATTACCAGAAG 2581449 28 100.0 32 ............................ GTAACCGCATGTCGGCTTTTGCTGCATGGTGG 2581509 28 100.0 32 ............................ TTCGGCCATACCGCGATACGACGCTTAACCAG 2581569 28 100.0 33 ............................ TCGACGCGCTGGCCTCGCTGCTGATTTCTACGA 2581630 28 100.0 32 ............................ TACCGGACAACGATCACCCATTGTCATGTAAC 2581690 28 100.0 32 ............................ AATTACGACAGGGACGATACGAATTACTTCAC 2581750 28 100.0 32 ............................ TGTAATGGCATCGGGAGGCTGTCATGTGGATA 2581810 28 100.0 32 ............................ GGCTGCGTCGGGACCCACCACATCGCCAGCAG 2581870 28 96.4 32 ........T................... CCTGGCCCCGGCAGTATCTATGATGGTCAGGG 2581930 28 100.0 32 ............................ GGAAGAAATCACCGCCATGCTTACCGCAGGAG 2581990 28 100.0 32 ............................ GGCAACTGGCAGAATACGCTGACCGGGCAGCA 2582050 28 100.0 32 ............................ ATGCACCGGTAGAAGAACGCTGATCAATTGCC 2582110 28 100.0 33 ............................ TGCGGCTGCACGACCAGCGTCAGGGAAATCACT 2582171 28 100.0 32 ............................ CTCTTCGCGTCTGCGATACCGGAAACGGAGAC 2582231 28 100.0 32 ............................ ATGCACCGGAAGAAGAACGCTGATCAATTGCC 2582291 28 100.0 32 ............................ GTAAAGACGCTACCAGGCACATCGCTGAATAA 2582351 28 96.4 32 ............G............... TCGACATCGCCGAGAGCGGCGTAGCCGTATAG 2582411 28 92.9 32 ............G.......A....... TGCCCGCCGAGCCGGAAAGCGACAGCGGTAAA 2582471 28 92.9 0 ....T.C..................... | ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTATCCACCAGGTGGTGGATAAGTTTATCGTTGAGCTGCAGGTCCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTAAGCCAGGAAGCCCGCGATTGGCTGGCCGAGAAAGGCTACGACCGGGCCATGGGCGCGCGTCCGATGGCGAGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCTAACGAGCTGCTGTTTGGCTCACTGGTTGACGGCGGTCAGGTGATCGTTGAGCTGGACAAAGAGAAAAACGCGCTGACCTATGCCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCGGCACATTAAGTCGCTTGCGTGAAACGTCAAAACCGGCCTCAGGGCCGGTTTTTTTATGCCGATGTCCTGGACCCTTTTTTATTCCCCTTTTTTAAGCTATTGATTTTATTAAAGAGAAAATCTGGCGTGAAATTATGGTAGCAGAGAGGGGCTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTCGTTCGTTCA # Right flank : AAGAGCTTGCCCATACTGCGGTGCAGGCTAAAACGATTCTAAAGAATTTGCCAAAATAATAGGCTATTTTGCAATTTGCGATGAATGTCAACGTATTACCTCTAATATACTGTTTTTATAAACAGCTATCGACACTGAGCCACAGGATGTGACTATGCCCGCGAACTATATTGCCCCGTCGGATTTAAAAACGATTCTCCATTCGAAGCGCGCCAATATTTATTATCTGGAAAAGTGTCGGGTTCAGGTCAACGGCGGCCGCGTGGAATATGTTACGAGCGAGGGAAAAGAGTCATTTTACTGGAATATCCCAATAGCAAATACAACGGCTATTATGTTGGGAATGGGAACCTCCGTTAGCCAGGCTGCAATGCGTGAGTTTGCCCGAGCGGGCGTAATGGTCGGTTTTTGCGGTACGGATGGCACGCCTCTTTATGCCGCTAATGAAGTCGATATTGACGTTTCCTGGCTGTCCCCGCAAAGCGAATATCGACCAACTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2590927-2591494 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI535631.1 Klebsiella oxytoca MGH 28 addUR-supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2590927 28 100.0 32 ............................ TATGAAGATACAACGGATGAACAAAAAGAAGC 2590987 28 100.0 32 ............................ TCGCCCCGCAGCGCCAGCCGTGCGGCCAGTAC 2591047 28 100.0 32 ............................ GGAAGAGGAAGCCGGTTCCGTGCTGTCTACTG 2591107 28 100.0 32 ............................ CGATTAACACCAAAATTTAATTGGTAATTAAA 2591167 28 100.0 32 ............................ ATACTTTCCGGCGGCATGCTGCCCGGGCGCCA 2591227 28 100.0 32 ............................ AGAATTCTGGTTATGAAGTAATCGGTGATTAC 2591287 28 100.0 32 ............................ TCAAGCGGCGGGACCGGGCTGTAGCTGTAGCG 2591347 28 100.0 32 ............................ TGGATATTCGCATCGCCAGAAAGATAATAAGC 2591407 28 100.0 32 ............................ AACGGTGACGATACTCAAACTCTCTCACTCAC 2591467 28 92.9 0 .........................TG. | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TACAAGGATGGCGTTGCGTCAGTCGGGTACAGGTAAAAAGCAGCCCCGAGCGGCTGATGCGCCGCTCGGTAAGAAAAGGCTGGCTGACGCAGGATGAAGCAAATGAGCGATTGCTTAGCATGCGGGGAGAGTCAACAGCGCTCCCCTGGTTGAATATGAAAAGCCTCTCCAATGGGCAGAAGTTTCCGCTATTTATTTGTCACGGTGAGCTGCTGGCGCAGCGCGTCGCGGGAACATTCAATAGCTATGGGCTGAGCCATATCGCGACTATCCCCTGGTTTTAGCATGTTGGTGAGAGTTTTTGACGAGTGCTAAAACAAACCATAACCGGCGCGGTCTTTCGCGCCGATTTTTCAATCGCTAATTAAAACCCTTTTTTATGATGAATCTCTATCTTATTGATTTTAGATAGTGATTTTATAAAAGTCGGAAAAAGGGTTGTGAAGAGGGGAAGGCGTTTTTTGGCTTTTTTATCAGATGGTTGTAGTGGTTAGGCTTCA # Right flank : ATCGTGGCGATTACGGGCGCAGAGACAGGGCCGTCAAAGCCGAAGAGGGAAGCGGCGTGAGAATAAAAGAAATGAAAAGACCGGGAATTATCCCGGCCTTCAGCATCTGGCGCGTTAAGCGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATTGCCCGTAATTCACGCGGATAAACCGGGCGACAGGCGCAAACG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //