Array 1 158115-158572 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSSJ01000010.1 Pseudomonas aeruginosa strain S2239_16 IPC903_10.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 158115 29 100.0 32 ............................. CGACAGGTACGACTGGCGGTTGATCTCGATAG 158176 29 100.0 33 ............................. TGAACCCATCCACCACCGCCGAACCGTCCTGCA 158238 29 100.0 32 ............................. GGGTTCAACGACTGCGGAAACCGTCCGGCACC 158299 29 96.6 32 ..............T.............. CAGCCAGCTTCGGCTCTCTGCATTGTTGAGCT 158360 29 100.0 32 ............................. CCGGCCAGCCAGGCCGAGGGCGCGCTGTTGTT 158421 29 100.0 32 ............................. AAGGCTTCGGCAGCCTCCTTTGATATCCGCGG 158482 29 100.0 33 ............................. GCGGCCGAGGACCTCGACAAGCTGGTCGACTCC 158544 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 8 29 99.2 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : CCAGCTCGACAGCGCGCGGAACTTCATCGCCGCCTATGCCTTGGAAGGCGAGTGGCTGCCGAGAGAGCGGGTCCATGGCTTCGGGGCGCTGATTGGCCGACCCTTGGGGCGTCTCGAGCGGTGGATGGTCTCCATCAACTACAAGGGGGAGGAGCAGTACAGCCCGATCCCCAACGATGCCTGTGTCCTCAGCCATCGCGACCTGATCAAGGCGATGGTCGCGACTCCCGGCGACCTTCCTGTCTCCACCGACGAGATGTTCGAGCTCGCCCAGGCGGCGCTGATGAACCTCAAGAGCCGCGCCACAGTGCAACAGCACCAGTTGCGGCAACTGCGCCAAAGGGTCAGGCAGTGAATGCCCCATCGGCATCCTCTGAGCACCTCAAGATGGAGCACGCTGGTATAAATGGGGGCCTTCCGGGGTAGCGCGAACGCCCGTTTTTATCGGTGGAGTTTTTCCTGCTATTTTTCTTATTTCAAAACAATGATATACGGAAAGT # Right flank : TGCGCTGCAGGTGATCCGCCTGACGCTGCGCAAGTGCCCCTACTGATGCGGGGGTTACCTCATGAGCGCAACCCTGGCTGGCTTGGGGCAGTAGGGGATGGCCGTAAACGGCATGGAGAGGGCGCCTTCTGGCGCCCTTTCTGTTTCTGCCAGATGAGCCCTGGGTTTTGATGTTGGCCAGGTGATGGTAGATTGCGGGCTTTTAGGAGGCTGGATATGGAAAGCGGCTCTTCTTTATTGCTTGGTTTTGTCCTTCTGATTGGAGGTGTTGTCCTCTACTTTTTACCTGCAATAATCGCTGAAAATAGAAAGCATCATAATAAAGGTGCGATAACTGTATTAAATGTGCTTCTCGGATGGACCTTAGTGGGATGGGTTGCCGCTTTGGTTTGGGCTGCGTCTGCCACAAGAGTGAGTGAGAGAAACAATTCTGTGGGTCGAAATAATCTAAATCTGCAAGCTCAAGCAAGTGATGTTCGACCATGTCCGTATTGCGCCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 36780-37947 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSSJ01000021.1 Pseudomonas aeruginosa strain S2239_16 IPC903_21.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36780 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 36840 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 36900 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 36960 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 37020 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 37080 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 37140 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 37200 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 37260 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 37320 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 37380 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 37440 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 37500 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 37560 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 37620 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 37680 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 37740 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 37800 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 37860 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 37920 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48720-46472 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSSJ01000021.1 Pseudomonas aeruginosa strain S2239_16 IPC903_21.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48719 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 48659 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 48599 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 48539 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 48479 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 48419 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 48359 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 48299 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 48239 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 48179 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 48119 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 48059 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 47999 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 47939 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 47879 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 47819 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 47759 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 47699 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 47639 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 47579 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 47519 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 47459 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 47399 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 47339 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 47279 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 47219 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 47159 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 47099 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 47039 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 46979 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 46919 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 46859 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 46799 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 46739 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 46679 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 46619 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 46559 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 46499 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 38 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //