Array 1 109364-107931 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZTT01000003.1 Salmonella enterica subsp. enterica serovar Montevideo strain 50270 50270_c3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109363 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 109302 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 109241 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 109180 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 109119 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 109058 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 108997 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 108936 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 108875 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 108814 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 108753 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 108692 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 108631 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 108570 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 108509 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 108448 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 108387 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 108326 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 108265 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 108204 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 108143 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 108082 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 108021 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 107960 29 93.1 0 A...........T................ | A [107933] ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126565-125499 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZTT01000003.1 Salmonella enterica subsp. enterica serovar Montevideo strain 50270 50270_c3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126564 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 126503 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 126442 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 126381 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 126320 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 126259 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 126198 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 126137 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 126076 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 126014 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 125953 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 125892 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 125831 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 125770 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 125709 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 125648 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 125587 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 125526 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //