Array 1 572-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBKP01000095.1 Methanolobus psychrotolerans strain YSF-03 NODE_168_length_2934_cov_28.261759, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 571 37 100.0 36 ..................................... TTTTTTGTAAATAAGGTACTCATAGAAAGAAGAAAT 498 37 100.0 33 ..................................... TATGAGCACGCCGGTAAGATGGCACGTACATAT 428 37 100.0 38 ..................................... AACTGGCAGGATAAACAAAGCAGGAACGCGGTAGACCA 353 37 100.0 33 ..................................... GGAATTTATAGGTACTACAAAGATTTTAAGGGT 283 37 100.0 34 ..................................... TTGTCGTCAAGCGGTAAAAACGTTGTACAGACGA 212 37 100.0 35 ..................................... ATTGAACTTGTAGCAGAACTAACAGACATGAACGT 140 37 100.0 38 ..................................... TATAAACAGATATTAGAATCAATTTAAACGAGTCAAAT 65 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 100.0 35 GTTACCATACCCTGTTATCACGGGTGCTCTTGTCAAC # Left flank : AGAATGGCAAACAGCAAGTATTTCGTCCCATGTGTTTCTCAACTTATTCGAATAAATACTGCCTCTGTGTTCCTCAAGAGATTTCCATAATCCTGCGGCACCATCAAAACCCCCGATCATAGCAGAACCCCTTGAAATCACTGAGGGCCTCACAGATCCTTTTACCATGGAACCTCCATGAGATGGAGACCTGAAAGCAACCCAGCCATCGCCAAGCATCACCTTATTTGCATTAGCACTGCCAAGAGAATGAAATCGTGAAGCTTTTTTGCCACCAATGCTTGCAGCTGGGAATCCATTATATTTACCATCCATGTAAATATACTTTGGACAGTTCATGCACCCCATCTCTTTTCCTTTTTGAATGACATTTTCAGGAACGTTTTCACCTAACTCGTTTCTCATGAGATTCCTCACTATGGTTCGTTATTAACAACTGTAAAACATAATCATTTGGCATTAAAAGAAATAGACTACAAGTATTCTTTTAATAAAAATCG # Right flank : CATTCAAATCCGAAAACATAGGTAAGGAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACCATACCCTGTTATCACGGGTGCTCTTGTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 13240-12030 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBKP01000011.1 Methanolobus psychrotolerans strain YSF-03 NODE_12_length_13067_cov_33.120457, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 13239 37 100.0 38 ..................................... CGTCAAGAATGTCCTTGGCCTGAACGGTTATGCCGATT 13164 37 100.0 36 ..................................... TAAGAGGTGTTAATATGAGACGAAAACTTTGTAAGT 13091 37 100.0 35 ..................................... ACGCGGTTGTATGGTTCATGTCACGAAGGGATACA 13019 37 100.0 35 ..................................... ACGAAATAAATGCTGTTGTCGGAAAACCAGTCGTC 12947 37 100.0 35 ..................................... ATGTATAACTTCTCATAAACAACATTCACTTTTGA 12875 37 100.0 36 ..................................... GAATTTACAACATGAAATGACTCACATAGTCTTTTC 12802 37 100.0 36 ..................................... CTCATAGCTACAAAAAGTAACGTTCGTGTTACTACC 12729 37 100.0 37 ..................................... AAAATTACTACAGAGGCGCTTAACAGTGTTGGAACTA 12655 37 100.0 36 ..................................... TACACGGTTGAATCATTCGCAATTAAAAAACCTTCA 12582 37 100.0 39 ..................................... TCTATTATCCCGATACCTGTATCAAGTGATAGACCTAAG 12506 37 100.0 36 ..................................... TATGAGATCAATCAAAGAATATGAGGAAGCAGAAGA 12433 37 100.0 37 ..................................... TCGATTTCATTTTTAATTTCATCTATATAAAAATCTT 12359 37 100.0 34 ..................................... ATTAAATCAAACATTTCTAATTCAAACATATGGC 12288 37 100.0 36 ..................................... TTAACTCTTTCCGTTTTTATATATGTAGATAATCTA 12215 37 100.0 37 ..................................... TCATTTATTCCACCCCATACATCTGTAATTTCATATT 12141 37 100.0 38 ..................................... TAAAAATCAAAGGGTTTTCTAAACAATATTGCAGTGTT 12066 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 17 37 100.0 36 ATTCAAAAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : CACTAAAAAAAGGATTGAAACGGTCGTGCAGGATATGAGCAAGTTTCAACTTTCGCG # Right flank : TCTGGCATCGATGTGCCACAATTACGGCAATGATGTGCAGTTATTGAAATACGGCGAGATATTTTATAATTTCGATCATTTCCACGTTATTGAGGGTTCAAAACTGGCTTTGAGTGATATTATCCCGTACACTCACTTAGCTTCTCCAAAAACGAAGAATGCACTTGAAGACTTTAGTCGTTTTGTGCGGACTTCAGAGAGTCGCCCGACGAATACGTAGGAGCAAAAACACAATCATAAAAATAGATAACCTGGAGAAAGTGATCGATGAGGATATCCAGGAATTAAAAGGAAAATTGGATGAACTCTACAACTCTGAATGAGCATTCTCCGATGGGCGAGGTGTGAAGATCTCCCTGGAATAAGGTTTAAATATTGAACCTACATAATAGAGATTATACAGGTAAAACCAGTAAGGCAAGTGTACAATGATGTGCACGCACAACAGTCCTTACTGGTACTGGCCATCTTTTTCCTTCAGATTCCATACCTCATAGAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAAAAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 22-346 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBKP01000084.1 Methanolobus psychrotolerans strain YSF-03 NODE_117_length_2820_cov_34.863121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 22 37 100.0 38 ..................................... TATAAACAGATATTAGAATCAATTTAAACGAGTCAAAT 97 37 100.0 35 ..................................... ATTCAAATCCGAAAACATAGGTAAGGATACCATAG 169 37 100.0 34 ..................................... AAATTTTAAGGTGATAAAATGGTTGTAGTTACTA 240 37 100.0 33 ..................................... TAAGTGGCTGCTTGTGTTGAAAGTGCTTATTAT 310 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 100.0 35 GTTACCATACCCTGTTATCACGGGTGCTCTTGTCAAC # Left flank : AGAACTAACAGACATGAACGTG # Right flank : CCCTATATATTTTATCCTTTAAACAGCTTTTGCTCCTCTGAGAATGCTTCTTTTTAGACCCCTTTTCTGAACATCTACTTTTCAACATGTGGTTTATAAAGGTCAGCCGAATCAAGAGCAGGTGACACTATGATTTAAGACTCCGGTAAAATGAGCAAAACGATATGTAGCGACCGAATTAGTCAAAATACATTCTGTATTATTCTGCATTGTCCAGGGTTTTGTGGCAAATTTCGGCTAATTTTCACTGGAGATCTACTTTTTGCCAGACCCTTTATAAAGGTTTCCAGTAGAAATTGAGGTTTTGTTTATATACTCAGGTGCTTTATATAGTCAAACTGGTTTCCTACACAAAAATATGAGCTATCTATCAATACTGGCTATTTTTGAGCGATGGACTACACTGTTATCAACAACAACGTCACCCTCGCAATTATCATGCATATCGCAGAAACTCAGGAGATTGCTTCGCTGTATAATAGAATCCGTTATGTTCACAT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACCATACCCTGTTATCACGGGTGCTCTTGTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 21079-22066 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBKP01000034.1 Methanolobus psychrotolerans strain YSF-03 NODE_35_length_21844_cov_33.828785, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 21079 37 100.0 39 ..................................... TGAAAATGAGCTTAATGTATATAGTTTTGGTGGTGTAGA 21155 37 100.0 36 ..................................... CTTCTTGCTACTGGGACATAAACAGTACAAATCAAA 21228 37 100.0 37 ..................................... TCTCGAATGTGACAACACCTTAATTTAACTTCACATT 21302 37 100.0 36 ..................................... AATTTGATGCTGATTATTCAAAACTTAATGAAGTTA 21375 37 100.0 37 ..................................... CGTTTTTGCTCGATTACTTTATCTTCGGACACTTTCT 21449 37 100.0 36 ..................................... TCCAAATAATCAATTATATCATCCTGTAACTGTTTA 21522 37 100.0 36 ..................................... AATAATATTTACATTTCAATATTTTATCCCCTTGTA 21595 37 100.0 34 ..................................... CGACTGATATATGCCAGTTCTGGCCGTCGTCAAT 21666 37 100.0 36 ..................................... TAATGTTGTTTGTGATGCTTTCTTTTTTAGTTGCAT 21739 37 100.0 37 ..................................... AGAAAGAATATTAAATATGGAGCAATGATTAAAATGT 21813 37 100.0 35 ..................................... TTCGAATCTACTGATAGCACAAAGGTGTTTTGTGC 21885 37 100.0 36 ..................................... TTATAAAGGGCATTGCAGGTGAGTTTTATCCATGCA 21958 37 100.0 35 ..................................... TCCCCATTACGTTCAGTTCATCGTCACTGATACAT 22030 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 14 37 100.0 36 ATTCAAAAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGAATCTGAAGTTTATCTTGTATCGAAAACCAATCACATCAAAGGCATAGTTGATGAAGTACTCTTTCTGGAAGATGGCACTGCAGCACCTTTGGAATACAAATTTGCCGAATACAAGGAAAAACTCTTTTCTACTTACAGGTACCAAATAGTTTTACAGGGACTCCTGATAAAAGAGAACTATGGAAAAGAGGTTAATAGGGGCTATATCTGCTACACTCGCAGCAACAGCCTGGTTAAAGAAATGGAAATAACTTCTTCTGACTTCAATAAGGCTATCGATGTCATCGATGCTATACTTGAGATTATCGAAAAGGGCAAGTATCCCAAAGCAACAAGGTCTGGAAATAAGTGTATCGACTGTTGTTACAGGAATATCTGTGTATAGCACTATTTTCTTATATTTTTAAACCCTATGATAATTATGTAGCAAGAATTAAAGTGCTGCAAAAGAAACCTTCATAGCCAATATTCAAGCAAAAGACGGGAAATTTTGCGCT # Right flank : TTGAACGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAAAAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA //