Array 1 1325183-1326933 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053835.1 Arcobacter defluvii strain LMG 25694 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1325183 36 100.0 30 .................................... TCTGTTACTATATCAGTTACATCTGTATCT 1325249 36 100.0 30 .................................... CTAAAAGTCTTTGTGCAACACTTGTCATTT 1325315 36 100.0 30 .................................... GCTTTAATAGTTATGTCTCCAACTGCATCA 1325381 36 100.0 30 .................................... ATATAACCAATAAGCACAATTCTCTTTTTT 1325447 36 100.0 30 .................................... AAAACTGGTACAAGTTCAATTGAAGATACA 1325513 36 100.0 30 .................................... CGAACAAAAGTAGTCGGGGTGAGTGTATTT 1325579 36 100.0 30 .................................... CAAGCATTCTTTATTATTTCTAACGGTGAA 1325645 36 100.0 30 .................................... TGTAAACAGGTGACAAATATCTATAAGCTC 1325711 36 100.0 30 .................................... ATGAGTTCAATAGAAAAAGTTAAGTTTTCA 1325777 36 100.0 30 .................................... TTAGATTTATTATCTTATCTTGGTGTTATT 1325843 36 100.0 30 .................................... TAAGTTCGTATTGTCAAATGAGGGAAAATT 1325909 36 100.0 30 .................................... AAGGAACTACTACAAGAGCAAAGAAAAGAG 1325975 36 100.0 30 .................................... TAACAAAGCCCTGTAGTTCCTGCAACTAAC 1326041 36 100.0 30 .................................... TAATATCTTGTTCTAGAGCTTTAACCTGTT 1326107 36 100.0 30 .................................... CCACCTTTTGAAAGTGGAACTTTAGGATAT 1326173 36 100.0 30 .................................... ACTAAGTTATCAGCATAAGAGTAGTAGTTA 1326239 36 100.0 29 .................................... TGACTCTTGTAATGATTCTAATTTAACTT 1326304 36 100.0 30 .................................... ACTTTTGATGGGAATGCGAGTACAGTTTCT 1326370 36 100.0 30 .................................... TACTCATAAGTTCTTAAAATATTCCATTAC 1326436 36 100.0 30 .................................... AAAGCCCAAGTTCTTTAAGTCCTTTTGAAT 1326502 36 100.0 30 .................................... ACTGTTTTGATATTTGTTCCACTTACTAAT 1326568 36 100.0 30 .................................... ACTGTTTTGATATTTGTTCCACTTACTAAT 1326634 36 100.0 30 .................................... AAAGTCATTGGATTTGTATTCTTTTGCATT 1326700 36 97.2 30 ........................A........... ACAAGTGCACTTGCACTCATCCACTCCGTT 1326766 36 100.0 30 .................................... TACTCATAAGTTCTTAAAATATTCCATTAC 1326832 36 100.0 30 .................................... GAGTTGGTGCGGGAGTATTTGATAGATTAG 1326898 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 99.8 30 ATTTTATCACAAAGGGGTTTGTAGGGGTCTTAAAAC # Left flank : ATTTATGTGGTTGATGATAATGTTTGATATGCCTACAGATACTAAAAAGGCAAAGAAAAAATATAGATATCTTAGAACAAAACTTTTAAAAGAGGGATATATTATGATGCAGTTTTCTATTTATATTCGCTCATTTCACTCTTATGAATCAGCACTCAATGGGAAAAAGAAAATAAAAGATTTTATAGCATCTAATACTGTTAAAGGGAAGATAAGAATTATAGTATTTACTGATAAACAGTTTGCAAATATGGATATAATAGTTGGTACAAAAAGTGAAGAAGAAAAAAATGCGCCAAAACAGCTATTGCTGTTTTGACCATTCAAAATCTCCTTTGAAAAATCAAAGGATTATTTTAAGTCCCCATAAGAAACTTTTAGTTTCACAAACCCCTTTGTGATAAAACTTCTAAATATTAGCTAAAAAAAGCTCAAATTGTCAATATTTTTTTAACTAAAACTAGGTAAAAGCCTATGAATAAGGCTATCTCAAGACACCC # Right flank : TAAAGAGGTTCAAGATGTTACAGGTTCTTGAACTTTTCGTATATTCAAGTCATCATTTCATGTCTTATTTTCTGTTGACAGATCAATTTTAACTTGACGTTTTTTCAAGTGATTTAGCTTTTTTTAATTATTCGTTTTAATTTTCACTACTATTTGCAATTCTTTTTCTTTCTGTCATAATCTTTAAAGCTAAAGTTTTATCAATTTTTATTCTAAAAGTATCGTGAATAGTACTAATAACTTTTGAGGCTAAATACAAAGATGTAATAACGGCTCCAACTGTTCCAATACCAGCTACCCAAGTTCCAATCATAATCCAAAATGTTGATGTTTCTATACTCATTTAAAACCTCTTATTATTTAATTTTCGCAAAAGGATTAATAAACTCTAACTTATCTAACTCACTATTGTATGAAAGCAATATGGTCTTACTAAAAATAAATTCATTTGGTATTTCCTTTACTTCATTATTATTGTACTTCTCTAAAAACATTAAAAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATCACAAAGGGGTTTGTAGGGGTCTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 1939194-1935445 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053835.1 Arcobacter defluvii strain LMG 25694 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1939193 30 100.0 36 .............................. CCTGATATTAAGTACAAAGAAGTAATTAAATACAAG 1939127 30 100.0 37 .............................. CTTACTAAACTTTAGTTTCATAAACATAGAAGAAAAT 1939060 30 100.0 34 .............................. TAATGAAAACCTCCAATTAACCTATCAGCTGTAA 1938996 30 100.0 38 .............................. TTTAATGATTTAAAAAAAAGAAGTATGAAACATAGAGA 1938928 30 100.0 34 .............................. CTAAAATTTGTGATTGTATTGGTCATGGAAAATA 1938864 30 100.0 37 .............................. AGAAATACAAAACCTAAAAAATCAACTTATCATAAAA 1938797 30 100.0 36 .............................. CTAACTAAATAATCAATAGGCTTTAAATTTTCCATT 1938731 30 100.0 37 .............................. GTTGTAATAGGACTTGATGAAAGTTCTTTTAGAACAA 1938664 30 100.0 38 .............................. TCTAGTGTAACTGCTGTGATATAACTTACTATCATTAA 1938596 30 100.0 35 .............................. TTGTTTTTTTTACCGTCTTGCATATCTAATTCAAC 1938531 30 100.0 35 .............................. ACAATTTTATCAAAAAAATTTAATATATCACTATA 1938466 30 100.0 34 .............................. GCTATTACAAGTCTTTTACTCATTAATGTTTTCA 1938402 30 100.0 37 .............................. TTTAATATAAGTTTGACTATAAAAAGTAACCGCATTT 1938335 30 100.0 34 .............................. TGACTAGAAACGATAGGCTCTACCTCTTCCATAG 1938271 30 100.0 34 .............................. CAAATTCAGAATAAATGGTGTGATTTAGTATTGA 1938207 30 100.0 36 .............................. AGTAACAATTAAAGATGATATGTTAGATGAATTGAG 1938141 30 100.0 34 .............................. GAGAATTGATATAATGATAGAACCATTTGACATT 1938077 30 100.0 34 .............................. TTATAATTATTTGCTTCAAAATCACCATAATGAG 1938013 30 100.0 34 .............................. TAACGAGTCTTTATGTTTTTTAAAGTTGAAGTAT 1937949 30 100.0 35 .............................. AGAAGTAAATCAAAGACTAGATGTGATTGAGCATA 1937884 30 100.0 34 .............................. TCTTCAGATTCGATAACATTTATTGATTTAAATT 1937820 30 100.0 35 .............................. ATCACAAGGAAAATTAAACGCTGAATTAAGAGCTG 1937755 30 100.0 35 .............................. AGCGTATCTAATAACATAAAAGAAAATGAAAAATT 1937690 30 100.0 35 .............................. TTAATAACTTCACTAAGTTCGCTTAACGGCAAGTC 1937625 30 100.0 36 .............................. AAATCAACTTTAAATTTTGCGCTATTGTTTACGCTT 1937559 30 100.0 34 .............................. ATATGAACAAATGTAAAACCAATAAGCATTTTTT 1937495 30 100.0 36 .............................. TCATTAAAAATAAAAATTGATAGTTCGGACGCATTA 1937429 30 100.0 36 .............................. ACTTATTTCAAATGGAAAAAAACAAAACCAGAGTTA 1937363 30 100.0 35 .............................. GTTGTTAAATCAATACCATCTAGTAAATCTCTAAA 1937298 30 100.0 35 .............................. GCAGAAATATTGAATTTAGAAGATTGATAAAAAAA 1937233 30 100.0 34 .............................. AACTTTGGGATAATTACATAATTAGCTGGGTTTT 1937169 30 100.0 35 .............................. ATTAATGAACAATTTAAACAATTAAATAAACAAAA 1937104 30 100.0 35 .............................. CGCTATCTAATAATTTGCCTTATATTGTACCACTA 1937039 30 100.0 36 .............................. AGGCGTAGAAAAAGCACTTTATCCAACTAGTAATAA 1936973 30 100.0 35 .............................. GAAATAAATGACTTTTTAAAAGTTGAAGGAATTAA 1936908 30 100.0 36 .............................. ATAAAAATAGGAGTTTTATTAAATTTTGGTAAATGT 1936842 30 100.0 35 .............................. TCAGCCCACCAGTCATATCTTTCACCTTCATTTTC 1936777 30 100.0 35 .............................. CGCTATAACACGGCTGAATTTGACGATATGAAATT 1936712 30 100.0 35 .............................. AAGCTATTTATAAATGAAGTTGCAATATCTTTCAA 1936647 30 100.0 34 .............................. TAAACTATTTCATTTACATAATCTAAAACTAAAG 1936583 30 100.0 36 .............................. TTTCCCATTTTTGCAATAGCTATTCTTTCGTTTTGG 1936517 30 100.0 35 .............................. ATCAATCTTGGTATGAGGATGTAAATAGATTAAGA 1936452 30 100.0 35 .............................. TAAGGAATTTGTAGAGCTGCTCCAATTTGTCTTAA 1936387 30 100.0 36 .............................. TATCAAACATATGCCCGATATATTCAAGGGGAGTTA 1936321 30 96.7 35 T............................. GGATGTATTGATGATACTTTTGGAAATTGTTTAAA 1936256 30 96.7 35 T............................. TTTTTTATAGTTACAGCAAATCCCTTTTGAGTTGT 1936191 30 96.7 36 T............................. AAATAATACTCAGAAGAGATGTCGTTATGGAAAATT 1936125 30 96.7 34 T............................. TTGACCATTATAATTTAGTTTGCCAGATGGATTA 1936061 30 96.7 35 T............................. TAATCTGAAGCTTCTGGTTTAGGTGAATTAGTTGC 1935996 30 96.7 35 T............................. TTTCTTAGTCCTTCTGCAAAAGTAGCAGGGATAAT 1935931 30 100.0 36 .............................. AATGGTGAAACTTGTGTTCCTGACGCTCCTCCTAAT 1935865 30 100.0 35 .............................. CATCTCAGGCTGTTCTCTTTCGGCTAAGAGCTCTC 1935800 30 100.0 34 .............................. GTATCAGTTAAAGTTTTTAATTCATCCTCTAATT 1935736 30 100.0 36 .............................. TAGTATCTTTTACAGTGGTAGTTGTTGCTGTATTTA 1935670 30 100.0 35 .............................. ACAAATAATAAATATTATTGTTGATGCTAGAAATC 1935605 30 100.0 35 .............................. GGAAGAAGAAAAAAAACGAAGAGATAAAGTAGATA 1935540 30 100.0 36 .............................. AGGATTTACCTCTTAGTGATGCAGCTATTAATGCCT 1935474 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 58 30 99.7 35 CTTGAACTTAAACATATAATGTATTGAAAC # Left flank : CCTTTTAGACTAAAGGATAAAATGTGAGTAAAGATAAGTTTAATTACAACTACGCTTTTTTATTTTATGATATTGCCGATGAATTTAGTGAAGCTGGAAAATATAGAGTTGCAAAAGTTTTTAAAATCTGTAAAAAATATCTAAAACATCATCAAAAATCTATTTTCAGAGGAAATATCACTCCTGCAAATCAGCTCAAACTAGAAACCGAACTAAAAAAAGTGATAGATAAAGATTTGGATTTTATTTCTATAATAAAAGTGCAAAATAGTGGGAGTTTTGTAGAAAAGACTTTGGGAAATGATAAAAAAGAAGTAGAATCAATCTTTATCTAATTTTTCCAACTATTTATAAATGAAATTAATAATCAAACTGCTATAATATCGACAATTTGAAGAGTTCTTTTACAACTTATTGTTAATTGAACTTTTGATTGGAAAAATTAGTTTTAAAACCGATTTTTAGGGATAATTGATGTGTAGTATGTCGATTTTTTCTTC # Right flank : CTCAAAATTTCATTAGGTTCAAAACCATTTCTTACTTGAACAATGTTTAATAAAATAAAAAGCTTTAAAACTTGAATGCAAACATACAATATTATATTCAAGTGTCAAAAAATTTAATAAAGATTGTAAAGTATCAATCTTTGAATCTTAAAGAATATAATAACTCTCTTCATAAGCTTTTTTTATATGATATGTTAGTTTTAGGAAAAGTTCTTCTTTTATAGCACTTGTAAACATAAAAATTTATTTCTTTATTTTACTTATAAAAAGTGGATTTTACACAGATTCATATAAAAACAAAATTATCACAATATGTTATAAAGCTATAATTTTTTATAATCAAAAATATTAAAAATTGAGGATTTAATGGTAACTTTTTTTATAAAAGTAAAAGGCATTGTTCAAGGAGTAGGGTTTCGTCCTTTTGTATATAATTTAGCAATTAAACATGATATAAAAGGTTGGGTTAATAATGATGAAAAAGGTGTAAATATTTTATT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAACTTAAACATATAATGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //