Array 1 8375317-8371162 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017171.1 Myxococcus xanthus strain KF3.2.8c11 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 8375316 37 100.0 34 ..................................... GCGCGCATCCACGCGGCACTGGGCACCGTCCACG 8375245 37 100.0 33 ..................................... ACGCTGAAGTGCGGTGGTGTCACGGTGAATCTG 8375175 37 100.0 34 ..................................... CGTACTGTGGATTCACCCTCTTCCGACACGACGA 8375104 37 100.0 36 ..................................... ACCGGTGAGTAGCCCCACCGAGAAGAAGCTGGCGCG 8375031 37 100.0 33 ..................................... CACGAGGCCACCGGGCAGCCGGCGCCTGACGCC 8374961 37 100.0 35 ..................................... ATCCCGCCCCTGGGCAACGTGCGAGGCGACAGCGC 8374889 37 100.0 34 ..................................... GAACGGTTGGTCATGACTCGTTGCTCCGATTGGC 8374818 37 100.0 34 ..................................... ATCAACGGGCGGGGCCTCCCCGCCGAGGTCGGGC 8374747 37 100.0 32 ..................................... GTTTACCCCGGGACAGAGGCACCCAGCACTGG 8374678 37 100.0 34 ..................................... TGCTGCGTCTGGTACGGCACGGTCCCGCTCTGCG 8374607 37 100.0 33 ..................................... ACACAGCGTATCAAACGGGAATAGCCCGGAGGT 8374537 37 100.0 35 ..................................... TGGACGGACCTGTTTGACCGCAGCGGCGGCGAAGT 8374465 37 100.0 34 ..................................... GAGATGGCCGACATGACGGTCGAAATCGAGACCT 8374394 37 100.0 34 ..................................... GACGTCACCACCGTCGCGCGGATGGGCTCGGACG 8374323 37 100.0 35 ..................................... CTTTCGTGGTCGCGGCACTCCAGCCGCGCCACCTC 8374251 37 100.0 33 ..................................... CAGGAGGGCACGGAGGAGCATGAGCGCGCCGAA 8374181 37 100.0 32 ..................................... CCTCAACTCCGGCCTGAACGAATAGCGACGCG 8374112 37 100.0 35 ..................................... CAGGACGCCGAGTACTGGCGCGACTACTGGAGCAG 8374040 37 100.0 33 ..................................... TCAACCGGGCACTGGGTAAGGACGGGACGCTGC 8373970 37 100.0 32 ..................................... CGCAGTGGCAGCGTCCTTTGACAAGGTGGAGA 8373901 37 100.0 35 ..................................... CGCCTTGACGCTGCCTTCGATGCGCTCGATGTCAT 8373829 37 100.0 34 ..................................... CTGCGTCTGAACGCACGTGTGCCCGCACTTGCCC 8373758 37 100.0 34 ..................................... CTGCGTCTGAACGCACGTGTGCCCGCACTTGCCC 8373687 37 100.0 35 ..................................... GCTAACCCAACTCCCGTCAAACGGAAGAAGGCGAC 8373615 37 100.0 36 ..................................... CGGTGGACGTCCGCCGGGCCATCTCCGCCGTGGAGA 8373542 37 100.0 33 ..................................... CTCTGTAAGAGGGACAACGTCGCCAACATCGAG 8373472 37 100.0 33 ..................................... CGAGGTGCGTGCGCCGTCCACGCGCAGCCTGTC 8373402 37 100.0 34 ..................................... ACGCCCGCTGCGAAAACCTACGGCCTCTAGTCGT 8373331 37 100.0 36 ..................................... CCGCTCGCAATTCGCGAGCATCCCCACGCGGTGACG 8373258 37 100.0 33 ..................................... TTGATGAGCCGCTCAGCGATGCCGTCCAGCGTA 8373188 37 100.0 32 ..................................... ATGACCGGCGCCAAGAGGCGCTTGAGGTCGAC 8373119 37 100.0 33 ..................................... CCCCTCGTCTCCACTGACAGCCAAGAGCCGGGC 8373049 37 100.0 32 ..................................... CGTGTCATCGCGTGGAACCCCGACACCCTGAC 8372980 37 100.0 32 ..................................... CGCGACGTCACCCTCTACGACGTGCAGGGGAC 8372911 37 100.0 35 ..................................... CGCGCTCCAGGCGACCGTAACGGGCCTCCAGCGGC 8372839 37 100.0 33 ..................................... AGGACGTCAAAGAACACGTCCAAGATGGCGTTG 8372769 37 100.0 32 ..................................... GTCGCAGGTGGCGCATTGGCATCGCCGTGCCA 8372700 37 100.0 34 ..................................... GAGCCGCCGCCGGCGAACCCGCGCGGAGACTGCG 8372629 37 100.0 36 ..................................... ACCCGTATCAGCAAGTCCTGGCTGACGCGGTCCTCG 8372556 37 100.0 35 ..................................... CCCATCTCCGCACTGATGCAGCTCGACACCTGCTT 8372484 37 100.0 36 ..................................... CGCCCATGGCCACACCAGACGTTCTGGGTGCTCCCA 8372411 37 100.0 35 ..................................... GCTGATTGAGCGGTGGGCGGCGCGGGATTTCGGAC 8372339 37 100.0 35 ..................................... CGCAGCCCCGAGGAGTTGCACTCCTACGCCGCCGA 8372267 37 100.0 33 ..................................... TCAGAGTTCGCCCTGGCGAAGCCGCGCACCTGG 8372197 37 100.0 35 ..................................... TATGCCGACTCCGACGCGCCCTCGGTGCGCAGCGG 8372125 37 100.0 35 ..................................... TATGCCGACTCCGACGCGCCCTCGGTGCGCAGCGG 8372053 37 100.0 33 ..................................... TCCTCGCGGATGCCGGAGACACCCGCGACCTGT 8371983 37 97.3 32 .........T........................... TCGCCCTTGGTGTTCTGCGGCCACGCTCCAAA 8371914 37 94.6 35 ........C.................C.......... GTGGTGGTGCCGGCGTGCGCGCAACACGAGGGGTT 8371842 37 100.0 34 ..................................... TCAAGCGTCAGACGGTCCGGATTGCCGGGGCCCG 8371771 37 100.0 34 ..................................... CGCACGTCCTCCGCCTTCGTGCGCGACCCGCGCG 8371700 37 100.0 34 ..................................... GGCAGAGCCGCGGCGATGGCTGTCGGGTCCGGAG 8371629 36 97.3 36 .................-................... ATGGAGGCTCCTGTGTTTCGTGAGTGTTACGGGTTG 8371557 37 97.3 33 ...............T..................... TGCAATATCACCTGCTGTCGTCCGCCAAAGATA 8371487 37 97.3 37 .......G............................. CTCACCAGGCGCTGGGAGCCCTCCCGCTCGAGCCAGG 8371413 37 97.3 33 .G................................... ACGCCGATAGAGACCACCACCTCGGCGGGGATT 8371343 37 100.0 33 ..................................... CAGCCCTTGGCCACGCCCAGCGCCTCGGACAGG 8371273 37 100.0 38 ..................................... GGCCCATACACGGACTCCCTCCGGCGCGCGGCTGCGAT 8371198 37 97.3 0 .........T........................... | ========== ====== ====== ====== ===================================== ====================================== ================== 59 37 99.6 34 GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Left flank : TCCCTTCGCGATGCGCTGATGCGTAGATTGACCGTGCTGATTTGTTACGACGTGCGGGTGTCGGACCCACAGGGGCCTCGGCGCCTGCGCAAGATTGCGCGGGCTTGCAGAGACCATGGCGTGCGAGTGCAATACTCCGTCTTCGAGTGTGTCCTGGAGCCCAAGGACTGGGTCGTCCTGCGCGCCCGCCTGCTTGGCGCGTTCGACTCGGAATGCGACAGCCTGCGCTTCTACTTCCTGTCGGAAGACGATGCCCGGAAGACGGAGCATCATGGCGCCAGGGCACCCTTGGACGTCGAGGGGCCGCTGGTCCTGTAGGGCTCCGCGAACCGGCCCCAGTGTGCGCTCCGTAGAGGGTTCGCGCTCTTTGAAATCCCGAATAGAATCATGGAGTTGGGTGAGTGGGCGTCAGGAACGGCGAGGCGCTTTCGTGGCCCCGCGGGCCGGTTCGCGAAGTTCGGCCGGATTCCGTAGTCAGAACGGTATGTTGGAAGGGCAGG # Right flank : GGGTTGGTCTGCCCCCCGATTTTCGGACCAGTTGAAGAGTGAGAGAGTCCTCGCGGCCAGGAGGTAGGTCGGTCGTGAGGAAGAGCAGGTTTACCGAGGAGCAGATGGTCCGCGTCCTGCGGGAGGCGGAGGCGCCTGGGACCAGCGTGGTGGAGGTGGCCCGGAAGCACGGCGTCGCCGAGCAGACGCTCTACCGGTGGCGGCAGAAGTTCGGCGGCATGGAGGCAGGCGACGCGACGCGGCTCAAGGAGTTGGAGAAGGAGAACGCGCGTTTGAAGAAGCTGCTGGCCGAGAGGGACCTCGAAATCGAGGTCATGAAGGAAATCTCCACAAAAAAATGGTGAGCGCGCCCGTCCGCCGTCGGCAGGTGCGGTACGCCATGGGAAAAGGCGTGTCGCAGCGCCGGGCGTGCGCGCTACTAAAGGTGGCCCGCAGTAGCCTGGGCTACGCCAGTCGCAAGGAAGCAAAGGACGCGGCTTTGGTGGCGCAGTTGCGCGACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 8666262-8665280 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017171.1 Myxococcus xanthus strain KF3.2.8c11 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 8666261 36 100.0 36 .................................... ATGGGGCTGTGCGAGCCGTAGGGTCCCAGGCCCACG 8666189 36 100.0 38 .................................... TGGCAGATGCGCCCCGGCGAAACCGGGAAGTCCACGCC 8666115 36 97.2 37 .....C.............................. CAACGTGCAGCGATGGTGGTGAGGGTGACGGCGCAGA 8666042 36 100.0 35 .................................... TACAGCGCACGCATGGAGCACCAGGGGGGGGAACG 8665971 36 100.0 35 .................................... TACTCGTCTCCAACGTCGATGACGAAGCACGCGCG 8665900 36 94.4 39 .......G...A........................ TCTTGAATTCTATTTCAGAATGGCACTCCGGACAGAAGA 8665825 36 97.2 36 ...........A........................ AGGATGTTCCGCGAGCACCTCGCAACGCAGGGGGTG 8665753 36 94.4 33 .........T.T........................ GCGCGGTTGCGCCTGACCGACGCGAAGTTCGAA 8665684 36 94.4 43 ..T........T........................ GACAGGGACGCGAGACAGCACCCCGTCCAGCCCCGCAGCCACG 8665605 36 94.4 34 ..T........T........................ GACGAGAACCCCGCCCTCGGGCGTGAAGTCCACG 8665535 36 91.7 36 ..T........T..........G............. CCGCAGCTCCCGCCGCATCCGTCGGGGCCGCAGGAT CC [8665516] 8665461 36 97.2 36 ......................G............. ACGCCCGCGCCCTCCAAGTCCTGCTCGACGAAGTCG 8665389 36 94.4 36 ...........A..............T......... AAGTCCACGTTCCTCGACCTGTACATCTCGAAACAA 8665317 36 75.0 0 .....T..........C.T...G...T..G.T..CT | CC [8665286] ========== ====== ====== ====== ==================================== =========================================== ================== 14 36 95.0 37 GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : CGAGCTCCTTCACCCGCTTCTCCGAAGAGGCCAGCCGGCGATGCTGGCTGGCCGTCAGTGGCCCGGTGGACTCGCCCGACAGGGCCCCGGCAGCCACCTGCCGCCACTCCTTCAACTGCGCCTCGTGCAGCCCCTCGCGGCGCAGCAACGCCCCCAACTTCTCACCCTCAAGCCCCTGGGCCACCACCAGCACGCGCAGCTTCTCCTCGGGCGTCCACTTCTTCGGGCCAGCGGGCTTCTTCTCCTCGGGCGGCGGCGTCATCGCCGCTACCCTACGCGCCTCGCGCAACCACTGCGACAGCGTCGGCTGCGAGACTCCCACCTGGCGGGCCAGCGCCGCAGCACTCGCCGCGCCTGGCCCCACCATCCGCTTCACCATCTCCGCCTTGAATGCATCCGTGTACGACACAGCTACCTGCCTGTACTCGCCCCCGGGGGTGGTCAGCTCGGCCGGTCAGCCGAGGCGACAACTTCCCTGACACAGGGGGGCCCTTTTCCCG # Right flank : CCGCCTCGGGCAAACCACACGAGGCTCCAGGCGTCTTCGCTCCATGCGATGAACAGCGGCCATTTCTGGTACCCCAAGCAGGTGTGGAGGAGGCCAGCGCGAGCTGCGCGGCCTGTCCACCGGCCTGAAGCATCCCTCGGGCGGCTTTGTCAGCGGCTCTCCTCGGCCCCTCTGCTTCCTCCCCTCCGCGGGGCCCCTATCACTCTCATGGGGCATCGGGAGGCGGCCGTAGTCAGGCAACAGAGGCGTCATGAACGACCCTTGCTAGCCCGCAGAGTCTTCAGCGGAAGCCAGGTGTCGTCCCCTATTCATTGCGTCTGGGTATGGCGGCTCCCTACCTTCCTGCGAGTCAGCCATTGGAACTAGAATCACGGCAGCAGTCCAAGGGGGGAACATGGTGCTGGTGGACGTATGGGAAGAGCATCTTGACGAAGCCTCCTTTCACTGGGAGCAGTGGGAGCGAGCCCTGGTGGCTCCTGACTTCACGCTGACGGAGACTG # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 8670034-8667997 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017171.1 Myxococcus xanthus strain KF3.2.8c11 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 8670033 36 97.2 34 ......................G............. AGCTGGTGCTTGTCGTACATCTCCTCCAACTTCA 8669963 36 97.2 38 ......................G............. CTGTGCGGATTGACCGGACGGCCGCCACGGCTGGCGGC 8669889 36 97.2 34 ......................G............. GTGTGGCCATGGGCCATGAGGGTTTCAATGTCCC 8669819 36 97.2 34 ......................G............. AACTTGCCGTGCTCCAGCACGAGCACCACGCCCG 8669749 36 97.2 34 ......................G............. AGGAGTCACGCCAAGGAGGCTCAGGGGAGCTAGT 8669679 36 97.2 35 ......................G............. TCGTGTGGCGTGGGCCACAGGGACATGTGTACAGA 8669608 36 97.2 37 ......................G............. ATGGGTGGTGTCGTCATGCCTCTTCCTCAGGGGTGAA 8669535 36 97.2 35 ......................G............. CTAAACTCCAGGGGCTCTTGCGTCTTCTTGTCCCG 8669464 36 97.2 36 ......................G............. AAGGTGTGGGAGTGGAAGGTTTCGATGATGATTGTG 8669392 36 100.0 35 .................................... TACACGGGGCAGGTGGTGGCGTCCTCGGGTGTCCA 8669321 36 100.0 37 .................................... TCAGAGGCTTCCGTGCGCAGGGCCAGGAACTTCTGCT 8669248 36 100.0 34 .................................... TGGAGCACCGCGTCCTGGGCTGATGCGGTGACGA 8669178 36 100.0 37 .................................... GTCTTCACCGTCTCTGCGTTCTCCAGGAAGTAGCTCT 8669105 36 100.0 36 .................................... GTCGCCGCCAACACCCCCAACGCCAGACGTTGCCAC 8669033 36 100.0 35 .................................... GAGCACGCAGAGTTCAAGCTGACCCGCGCCATGGA 8668962 36 100.0 35 .................................... CATGAGTCGGCACTCTGACTCATGCATGAGTCAGA 8668891 36 100.0 37 .................................... TTCTGCGTGGCCGGGTCATCCGTGTCGTCCGCCGTGA 8668818 36 100.0 32 .................................... ATCGATGGCGTCGCCGTGACGTCTGCTGCCGG 8668750 36 100.0 37 .................................... ATCCAAGTCCGCTCAGCGCGCACCACCTCGCAGAGCA 8668677 36 100.0 37 .................................... AGGTAGCCGTACAAGGCTTGTCTCTCGGCGCTGCTCG 8668604 36 100.0 35 .................................... CAAAAGGGAAGCCCTGAAGATGACTTTTTTGGCTT 8668533 36 100.0 33 .................................... ATAAAGGCCGTCTACGGCGGCGACGTGCTCCGA 8668464 36 100.0 39 .................................... TCAGTGGCGAGGGATTGCCCACTTCCCACCTCCCAACTC 8668389 36 100.0 36 .................................... ATTGCGGGCTCCGCCTTGTCGCGATGCGCGGGCCGG 8668317 36 100.0 35 .................................... CCCTCAATGGTGACAGGCGATTCCCCTGGCACCCA 8668246 36 100.0 37 .................................... AGTACCTCCCGGGCCTGCGCCCCTACCGCAGAGCCCG 8668173 36 100.0 34 .................................... GGCCACTGCTTGAAACGGCCGGGCCGCTGGAGTT 8668103 36 100.0 35 .................................... CAGAACGTTGAAGCCATGTCGTCCTGCACGAATTT 8668032 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 29 36 99.1 36 GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : GCGACCCGCGGCGGTGGCGGAAGGTGTATGCCCTGCTGAAGGGATATGGGGAGTGGTTGCAGCTCTCCGTGTTCCGTTGCTCGCTGACGGACCGGGACCGGGAGAAGCTGCGCTGGGAACTGTCGCGGCGGATGGATGCCGTGGACACGTTGCTGGTGATTGGGCTGTGCGGCGGATGTGTGGAGCGCGTGCGCGCCATCAACGCGAAGGAGGACTGGCCGGAGGAGCCCGCACCGTTCAAGGTGTTGTGAGGCGGGTGACAATCAAGCACTTCGCCGTGGCGGCGGCCCGCAGCGGCGAAAACAGCGGATTCCTCTGTGGTTTCATGGGGTTGGGGCTCTTTGACAGGTGAATAGGTGCATGATCGATGAAAAGCCGAGTGGTTTCATGGGGTTGGCGGTTCGGGGTAGGGTCTGGGACGGCCAACCTGGGGGACGGAGGGGAGGTGCTTGAAAGGGGGCTTGTAAGGTGCCGAAATTGCTGGGAGATTCAGGCGGGCG # Right flank : TAGAGGTGCTCCCACTCGGGCGCATCGCCCCGGTGAGCGTCAAGGTAGTTGTCGCGTGAGAGAGTTCAACCGATGCGCTTCAACTCCTGCACGGCCGGGGTGGGGTTCGGGGAGGGGTTGAGGCGCACAGGGCCTGCCGGTGTCCAGTCTCGCGTGTGGCGGCTCCATCGCTCAGGATGACGGGCTTGGGCGCGCTGGTACACCTGATGGCGCCGGGCGAGCAGCGCCGTCTCGCGACTGAAGTGTCTGTCGTCAGGCGTGACGAAGCGGATGGCGGAGTGCAGGTGCTCGGTGTTGTACCAGGCCACGAAACGCGCCACCCAGGCGCGCGCGTCCTCGGCGGATGTGAAGGGGCGCCGAGGGAATGAGGGGCGGTACTTCAGCGTGCGGAAGAGGGCTTCGGAAAACGCGTTGTCATCCGAGACGCGGGGCCGGCTGAAGGACGGGGTGACGCCCAGCCATTGCAGGGTGGCCAGCAGCGTGGCGCCCTTCATCGGGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : GTCCCGCTCGCCGTGATGCCGAGAGGCGTTGAGCAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 8698675-8693233 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017171.1 Myxococcus xanthus strain KF3.2.8c11 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 8698674 36 100.0 34 .................................... GAATAGGACTCAGTGGTCATTGTTGAACACTCCG 8698604 36 100.0 41 .................................... ACGGTGCCGTCCCAGTCCCGGACCTGCAGGGCTGACGCCTC 8698527 36 100.0 34 .................................... ACTCGTCACCGTAGAGCGTCCGGGCGAGTTGCAT 8698457 36 100.0 35 .................................... GAAGTGGCATGGGTCTGCGACAACTGCCGGGAGCA 8698386 36 100.0 38 .................................... TCGTGTGGAGCAGGGATGGGGCTTGCGTCCTCGAGCCG 8698312 36 100.0 36 .................................... TGGAGAAGTTGCGCAAGCGCTACCCGGACGGATTCA 8698240 36 100.0 34 .................................... TAGTTCAACGTCACCATGCCGTCACCCTCGCCGT 8698170 36 100.0 33 .................................... CGGGGCTCGGCGCCTCGTCGCCCTTCAGGAAGA 8698101 36 100.0 36 .................................... GGGATGGCGCCCGTCACGGGGATAGAGCCCGTGCCA 8698029 36 100.0 37 .................................... AGAACCAGTCCAATGATGCGCACTTCGCGGAGGTCAA 8697956 36 100.0 35 .................................... GCTGCGAGGATTTCCTTGGCTGTTCTCGGCTTTTC 8697885 36 100.0 35 .................................... ATCTACGGGGACGAAGGAAGCGGTAAGACGAGATT 8697814 36 100.0 38 .................................... ATATAGCCCGGCCCCCCAGCGTCCTGAAGCCGCCCCTG 8697740 36 100.0 35 .................................... CGCCAAGTGTCCGGCTGCGTGGCATAGGCCGCGAG 8697669 36 100.0 36 .................................... CCGATTCCTGCAACTCGGCGCTGCCGATTCCGAATG 8697597 36 100.0 36 .................................... TATACATCGTCGCCTTGCGTCAACAGGTGAGCCAGC 8697525 36 97.2 33 ...........G........................ GATTCGGACCCCAACATGGCGGTGAAGACGCTC 8697456 36 100.0 36 .................................... CTCTTTCCGGCGGAGGGGAGCTCGTCGAAGAAGATG 8697384 36 100.0 38 .................................... CACTGCCAGGGGGAGTGAGATGGTCCACATGGGCCTAT 8697310 36 100.0 36 .................................... ACCCGCAGGAAGTCGTTGGTGACGTCGTGGCCGCCG 8697238 36 100.0 36 .................................... CAGGGCCCCTTGCCTTCGAGCCACACGACACACCAG 8697166 36 100.0 36 .................................... CTGGCTAGGGCTAGCGCGTCTTGGCCCAAGACGGAG 8697094 36 100.0 41 .................................... CTCCAGAACGCGGGCAAGGAGCAAATCATTGACCTGCTGGA 8697017 36 100.0 38 .................................... CTCTTGTCCGCGTCGTAGATGCGCCACTTGAAGATGCG 8696943 36 100.0 35 .................................... CTCATGCCTGCCTTCTCCGCCAGGTCCTGCTGGCT 8696872 36 100.0 36 .................................... TGATGACCTCGTGCGCCTTCTCCGGCGTGCCCTTGT 8696800 36 100.0 34 .................................... CGCCGTGGTCAATCTCGCTCCGCAGCGAGGCTAC 8696730 36 100.0 35 .................................... TCAGGCTCGTAGTCGTCGCCCTGGTCAGGCTCGAT 8696659 36 100.0 37 .................................... AGCTTCCCCGACGACTACGTCGTGATGGGGAGCACTG 8696586 36 100.0 35 .................................... CAGTGCGTCCCTGCTCATCGAGTCGGTGAAGTACG 8696515 36 100.0 35 .................................... CTGTACGAGTGTGGCCCGCTGACGGGGCAGCCGCT 8696444 36 100.0 35 .................................... TCGATGGTCCGCGACTGGGTACGAGACGCCATCAC 8696373 36 100.0 36 .................................... AGCTTCCTTGTGAGGGGCGCCCATCGCGATTTCATG 8696301 36 100.0 35 .................................... CGGCCCCGTCCTCGCCCAGCGGCTCGCCTTGGGCG 8696230 36 100.0 37 .................................... TCCTTGTCCAGCGACACCAGGATGCGCTCCCCAGGAG 8696157 36 100.0 38 .................................... AAAACTTCGTAGGGACGTGGCAGCCACGGCCGGACGTA 8696083 36 100.0 33 .................................... TTCAGAATCTCTTTAGACTCATGCATGAGTCAG 8696014 36 100.0 33 .................................... AAAGTGAGGGTGGGTAACCGCCTACCCTCCCTG 8695945 36 100.0 39 .................................... GACTGCATGAGGGCGATCTTCGCGCGCAGGCACTCGCGG 8695870 36 100.0 39 .................................... ACCGGCCCGCCGTTCGCGGGCTCCGAGCTGATGATTTGG 8695795 36 100.0 36 .................................... GCAGCCACACCCGTGACAGCCACCACGCCCACCGCA 8695723 36 100.0 40 .................................... TTGATGTAGTCCACCGCGCCGTCCTCGGTGACCACGTTGT 8695647 36 97.2 36 ............................C....... TGACTGCTGGCTCGCGCATTGTCACGGCCAGAGTAG 8695575 36 100.0 34 .................................... GTCTTCCTTGTATACGGTGCTAGTCCCCATGCCG 8695505 36 100.0 35 .................................... TGGCGCGAGTATCGCGACTGGACTGTCGCAGTGCG 8695434 36 100.0 34 .................................... TCCTCCTGTTCCACTGTGTATTCCCGGGAGCACA 8695364 36 100.0 36 .................................... TATCAACGACTGCTGGTGGACGACCAAGCCACTGTG 8695292 36 100.0 35 .................................... AGCTCGCTGATGCAGGGGCTTCAGGCCGCGAATAC 8695221 36 100.0 39 .................................... TTGGGGCTGGGCGCCACTGCGATACGCACCGGGGCCGGG 8695146 36 100.0 35 .................................... CTCCTAGCCCGGCCGTTAGCTTCTCAAGGCTAATA 8695075 36 100.0 35 .................................... GTCGCAGTTCTCCGGCGTGGCCGTGCGGTACCGCT 8695004 36 100.0 35 .................................... CTGGCGTCCTCCTGGGCGGCTTGGCGGGCTGCTAC 8694933 36 100.0 34 .................................... TCATGTCGTTCTCGACGGTGTATGTCATTGAGAG 8694863 36 100.0 34 .................................... CGAAGAACCGCATGGGCGGCATGGCATTCACGGA 8694793 36 100.0 36 .................................... GGGGTTTGGGGTGTATGTGTGGGGTATGTTGACCAA 8694721 36 100.0 36 .................................... GCCCCAAGAAACTCAGCGTGGTTCGCCAGTTCCGAG 8694649 36 100.0 35 .................................... AGCATCTGGGCGAGGGAGGCCAGCAGGCCGAGGGA 8694578 36 100.0 38 .................................... CGGCCGTTGCGGACGACAAACGCCTCAACGAAGGGCCG 8694504 36 100.0 36 .................................... CCTCCACCTCCGGCAGCAGGTCCGGCTCGTGCTTCA 8694432 36 100.0 32 .................................... CTCGGCAGAGGTCCCATGAGTCGTGGAGCTGG 8694364 36 97.2 36 .........T.......................... TTCTTCCTCATCGGCTGGTGGCACCACACGAAGCGG 8694292 36 100.0 35 .................................... ACGGGCCGCATGGAGCAGATGTTGGACCCGGAGAG 8694221 36 100.0 34 .................................... TAGGTAACTCCGTTGTAGGACTGCCATTGATTGG 8694151 36 100.0 40 .................................... TCCACCACGACGGTTCGCCTGACCTCGGCACCGTTCCCAA 8694075 36 100.0 36 .................................... CCGATGAACGGCGACAACGGCGCCAGCGGCGTGGCC 8694003 36 100.0 38 .................................... GGCCAGCCCAGACGTTGCGGTTGTGCCAGTCGTCCGCG 8693929 36 100.0 34 .................................... CTGCAACCGACAGCGGCTCTGGTGTGGTGGCGGT 8693859 36 100.0 36 .................................... CTGGAACGGGTCAGCCCTACGGATGGCCCAGAGGTG 8693787 36 100.0 39 .................................... CCGCAGAGCATGGACTTTGCGTTGGACGGGCCCATTTCC 8693712 36 97.2 39 .........T.......................... TCCTCGTGCGAGGGGTGAGGTTGGCCAGCTACGCCCGAA 8693637 36 97.2 39 ..........T......................... TCCTCCAGCCATCACGCGATGGTTCCGCGGCAGAAAGAC 8693562 36 94.4 38 ..T...............T................. TCGCGGTCCTCCTCGCGCTGCTCCTTCAACTGCATGTC 8693488 36 100.0 39 .................................... AGCACCGTTGCAAAGACTCCACAGGGCGTGGTTACCGCA 8693413 36 100.0 39 .................................... TCCTTGGCCCACGGACTGCTGTCTGGGTACACGTAGACA 8693338 36 94.4 34 ..........G...................A..... TTCTGATTTTGCTTGTACTGGGCTTTGATGCCCG 8693268 36 88.9 0 ...................G.............TGT | ========== ====== ====== ====== ==================================== ========================================= ================== 76 36 99.5 36 GTCCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Left flank : TCTCCGTACTCTGCGCCAGGGGGCTTTCGCTGCACGCGCGTGGACCTGGGCGCCTTCACGCCGCGCGGCGAGCGCGCCGTGGGGGATGCGCTGCACCTGATGGGGTGCGGCTCGTTCCTGTCGCTACTGCCCGTGGCTCGGGGCGCCCCATTCCGTGGGGGGCTCGCGAACGCCGCGTGAGCGGAGTGCGGGCTGGGGCAGGGGCCTTGCAAGACTCCGCGCGCCGGGGTTGCCGTGGGGCAGTTGTATGATGAATGACATTCAAGCACCTCGCCGTGGCGGAGGCCCGCGTCGGCGAAATGGACGATTTCCCCTGTTGTTTCGTGGGGTTGAGGCTCTTTGACAGGTGAATAGGTGCTTGATCGATGAAAAGCTGAGTGATTCCATGGGTTTTGGGGTTCTGGGTAGGGTCTGGGAGGCACAACCCAGGCGAAGGCGGGGGAGGTGCTTGAAAAGGGGGGTGGTAAGTTGGCGGAACTGTTGGGAGATTCAGACGGGCT # Right flank : TGCCGCGCACGTTGGTTGATGGTCCGGAGAGCCGCTTGGTTGATGGCTTCGAGACTACGGTTCCCCATTCGCGTCAAGGCCTTCGCTGCCTCCAGCGGTGCCCTTCGGGCAGCTCTGACTCGACCGGAGAACCGCAGGATGGGAGCAATCGGTTCCGCATCTCGCGGAAACTGCTGTCGCGTCGAGGAGTTGGGTCCCATCACGAGCGTGACCTCCGGCTCCGTGATGGCATCTTCGAAGCCTCCAAGTGGAAGCCCATCAGCCAGAGCGCTCCAAACATGGCATCCATCCATCAACAAGCGTGCTCAGCAACAGGTGAGGCCAGGTCGGCGTGGGCCCGCCTTGTGTGATTGCCAGTTCTATCTGATGCTCATGGTATAGCCTGCTGTGTGGCGGACCTCTTTCCGGGGGACACTGCATCTTGCTTCGATGGACGGCGCCGCTGCTCTTGCTCACAGTCGTCATTGGCTGCGCGACAACTCGAGTCGTGCGGCTGGAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //