Array 1 1219562-1220594 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LR134495.1 Mannheimia haemolytica strain NCTC10643 chromosome 1, complete sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                        	Insertion/Deletion
==========	======	======	======	================================	=======================================	==================
   1219562	    32	 100.0	    34	................................	GATTAGGCGGAAAGGGGATTGTTAAAAAGCCTAG     	
   1219628	    32	 100.0	    34	................................	AGCAAACCGCTCCCTTAACCCTTCGGGCAACTTT     	
   1219694	    32	 100.0	    34	................................	TATCTATATTGGTAATAAAGGTACTAATATGTGG     	
   1219760	    32	 100.0	    33	................................	CCTACTGAAATAGTTTGGATAGAAGAAAATACT      	
   1219825	    32	 100.0	    36	................................	TAATTCCAATACACCTCTCCAGATTATTGTAAGATG   	
   1219893	    32	 100.0	    34	................................	ACTAGTGACTAGTGAAGTAAGTTCACACACAAAA     	
   1219959	    32	 100.0	    35	................................	ATTTCCATGATTTAAGGCATACTTGGGCCAGTTGG    	
   1220026	    32	 100.0	    33	................................	GACCATATTCAAACGCATTGCCGTAGTATTGAT      	
   1220091	    32	 100.0	    33	................................	CATACGGCTTGCGTAACGATTTAAGCCGGTTTT      	
   1220156	    32	 100.0	    35	................................	CCTCTTTCGGAATATGGCACCTCGATACATCAGAA    	
   1220223	    32	 100.0	    36	................................	CGCATTTGCTACTTTCTGAGCACCACCAGTATGAGC   	
   1220291	    32	 100.0	    39	................................	AAAACACCCACGCAGGGTTATTTGTCCACGCTTGTTTCC	
   1220362	    32	 100.0	    36	................................	GTGTGGTGTGCGTGCTGAACCTTGTTTTTTACCGCC   	
   1220430	    32	 100.0	    35	................................	CATCACTTCACCTCCTGCTCAAACGGCTGGATAAT    	
   1220497	    32	  90.6	    34	...........T......T....T........	TTACAAGATGCTGAAGTAGTTAAATCAATAGCAC     	
   1220563	    32	  68.8	     0	.T.....T..T...A.C.A.A.AT.......T	|                                      	
==========	======	======	======	================================	=======================================	==================
        16	    32	  97.5	    35	GCAGCCACCTACGCGTGGCTGTGAATTGAAAC	                                       	       

# Left flank :   GAGGAATTGGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGACAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAACCTGTAGTTCTCATAAAAATGCTGGAAGGTTAGCGAATATATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAAGTACAGTATATTGGCGATATGCTATACTTTTTTCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATGCGTTATCTGGTAGGGA
# Right flank :  TATTAATGGTAAATTTGTATGTTGCTAATTAGATTGATTACATCGGCTATGTATCATAGTAATGAAGAAAATATTCTATGTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGTGAAACAAGGGTAGCATTGGTAGAAAACGGGATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCATTTTTGCACGCTTCTGATATTGTTTCTCATACGGAATGTGTTGATGAAAATGAAAAGAAGCAATTTCTGGTTAAAGATATTTCTGAATTGGTACGTGAAGGGCAAGATATAGTC

# Questionable array : NO	 Score: 9.14
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCACCTACGCGTGGCTGTGAATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [8,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-1.40,-2.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-13] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.78,0.64   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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