Array 1 15946-15795 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALAP01000067.1 Streptomyces sp. AA1529 contig00067, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15945 29 96.6 32 .............C............... CACGGCGGTTTCGCCACCATGGCGGACCCGGC 15884 29 100.0 32 ............................. GAGGGCGCCCGGATCTCCTCGGTGGCGGTGCC 15823 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGGTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : AGTTGCGGCAGCGCCGCGTGGGTGGCGCTCTCATGCCGTATCCGGCCGACTGTGGAGTCAGCCCGCCGGTCGTGCGCGTACGCTGCCTCACCGAGGAACCCGGAACGAGCCGGCCTCGCCTTGAGGAGCATGCGCTGGAAAGACGGGATGATCTTTCCGAGATCGTGCAGTCCCGCCCAGAACATGACGATCCGCCTGGCCTCCAAGACATCCACACCCAATGCCTCCACGACCCGGCTGCGCTGCCCCTCGGCCAGCACGTGATCCCACACACTGCCGCACACCATCGCGGAGTCAACGAGATGCCCCACAACGGGATACGGCTTCGCCAACTCCTCGGACTTCCCACACAACCGCGTATCAACCACGCCGCGCCTCCCCAACGCGTTCCGTCAAGAGGCACGAACTCCATCACACGCCTCTGACACCATGAGGGCGTGACCCCGACAAACAATGGTCAAGCAACAGCAAAGCCGCTATAGAGCTGCAGGTCAGGAAGA # Right flank : GCCGCCACGCAGGCGGTGCGTCAGCTTCAAGACCCGCAACGGCTCCTGCCCGGCCACATGAAGAGGACCATGGCTCGACGCGGCCCCACAGCAGGCCCGGGTGGACGCTGTGTGACGCTCCGACAGGGACCTCACGATACCCACCGCCGGGGGCAGGAGAGCCCGGGGCGGGACAGAGAATCAGCAGAGTGAACGCACACAACTGCCGGTGTGGCCAGACACGCATCCAGTGGCCGACACCGGCCGGGGCAGGCGTAGGGCGGCGGATCACCGGCACACCGCCCCCGGACGGAGCACCGTCCAGGTCGCTGCCCACTCCCACCGGGCGAGCCGTGGAGACTCCCTGACTTGCGCTGCTATGGGGCGATGTCGGTCCTCACCCGGGCGTTCGGGCACTCGGCTGCCCGGTCACAGGGAGCCGGATGGGCTCGAGGTGCACCGCGCACGCCCGGGAGGGCGTTGCCGACATTCAGGCGGCCGACGAAGCCCCGCCGCCGACG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-13.00,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10832-11100 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALAP01000083.1 Streptomyces sp. AA1529 contig00083, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 10832 29 96.6 31 ............................G GCGCGAACTCCGCTACCGGCTTCTGGGCCAA 10892 29 100.0 31 ............................. GCACTCAGTGCAGCACCAGCGCCGTCTCCGA 10952 29 100.0 31 ............................. CGTCTCGATAAGGTGAACGCGTAGAAGATCA 11012 29 96.6 31 ............................C GGGCGGGCCGACGACCAGCGTGGAGGTTCCG 11072 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= =============================== ================== 5 29 98.0 31 CTGCTCCCCGCGCAGCGGGGATGGACCCT # Left flank : CTGTCGCCAGCCAGACCGTCAGTAGCCGCGCCTCTGCCTCACCACCCGGCATCGCGGCGGCGATTGAGCGCCGTACCTGCACGGGCAGCCAGTGATCCCAAAGCCGCCCGGCGACCTCGCCGCTGTCGGCCATGTGTCGCCACAGCGGCAGCCAGGCCCCGCTCCTGCCGGCCTCGCGCTGGTCGGATTTTGCCCACACCTTCCGAGCGGGCATGGACAGCCCCTGTCCCAGTCGCGCCACCTGGGGCCGCCTGTTATTCATAGAGAGGATTAGAGCCTTGAGAGCAGGGCGATATTGTGTTCTTGGATGAATCTGGCTGATAAGAGTCGTTACCGATCAGTGTCCATCAAGTGCTGCTCTTCTCGATGCTGACTCGCGCCTGCCTGCTTCCAGAGGGAGGCGTCGGGGTGTTCCCTTCTACCTGGTGGGAGAAATGTCTGATTCTCAACTTGTTGCTCAGAAGAGTCTCTTCTCCGGTTAGAACCCCAGGTCAGCAAGA # Right flank : CCAGCCTCGGTCACCTCACCCAGCTAGTGCCGCATCAGGCAACGTTCGCCCTGGGGGCGGTCTGCGACGATGTCTTCATGGACGAAGAAGTCATTCCCATTCTTCGCGTCGAGGACGCTGCGGCGGCGGTCGCTTGGTACGAACGGCTGGGCTTCGCCAAGCAGTGGGAACACCGCTTCGAACCGGGACTTCCCGCGTTCGTCGAGGTCGCCTGGGGCGGGGTGCGGTTGTTCTTGTCGGAGCACAAGGGCGATGCCCGCCCTGACACGTTGGTCTACCTCCGCGTTCGTAATGTCGAGGCCATCGCCTCCGAGTTCGGTGTGCAAGCGAAGGATGCTCCGTGGGCGCGTGAGATTGAGCTGCGCGACCCTGATGGCAACCGGCTGCGGATCGGCACGCCGACGGAATGACGCTCGTCGGCAGCGTGCGGCAGGGAAGCTGTGCTGGTGGCTGAGCGAGTACGCGTCCGCGAGATCGATGACGACGAGGGGCACCGCCTG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCAGCGGGGATGGACCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.80,-12.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12696-12964 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALAP01000083.1 Streptomyces sp. AA1529 contig00083, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 12696 29 100.0 31 ............................. TCGTACCTTGAAGTCAGTCGGGTACGAAAAT 12756 29 96.6 31 ............................A TCGCAGCGAACGCGCCGGGCCCGAACCGGCG 12816 29 96.6 31 ............................A AGGAGTTCCGGAAGGTGGCCGAGGCGATGGG 12876 29 96.6 31 ............................C ACGTCGGCCAGTGGGGCGGAATCAACGGCGT 12936 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================== ================== 5 29 98.0 31 CTGCTCCCCGCGCAGCGGGGATGGACCCT # Left flank : GGACCCCGACCGGGAGCCCCGGCCCCGACGGCGGGCGACCTACACCCGCACGCACGGGGTCAGGCATCTGTTCGCCGCCTACGACCTTGCCCGGGACAAGCTCTACGGCCACATCAAGCCGAGGAAGAACCGGACGAGGTTCCTGGAGTTCTGCCGCTACCTGCGCAGCCTCTACCCGCCCAAGATCCGCATTGCGATCGTGCTCGACAACTTCTCCCCGCACCTGACCACGAAGAAGGACAGCCGGGTCGGCGACTGGGCCGCGGCCAATAACGTCGAGCTCGCCTACACGCCCACGAACAGCTCGTGGCTGAACCGCATCGAGGCCCAGTTCACCGCCCTGCGCTACTTCGCTCTGGACGGTACCGACCACGCCAGCCACAGGGAGCAGGGCAGCATGATCCGCCGCTACGTCATCTGGCGAAACCGTCACGCCGCCGATCAACGCCTACGAGCCGTGGTCGACAGGGCGAACGTTGCCTGATGCGGCACTAGGGCTT # Right flank : TACGACGTCGACCGAGTCCTGTTGCTTCGCAGCCTGGTCGGTCGCTACACCAAGGCTGATCGTTCTATTGGAAGGCAACAACACGGAGTACGGGTCGTGTCAGGTTCACCGGTTCGGGGTGTCGTTAGACGGCGGTTGGACGAACGCCTTCGGACGATGCAACACGAGACTGAAACAGACGGACGTGCACACGTACCCTGATCAGGAATGATGTCACTCTCCGATACGAGCGGGTACGAGCCAAACGAACGCCCGCGTGCTCGTAATGCGTAGGTCGTAGGTTCTGTGTGCAGCAGAGATGCGGCACGCGCTGGGGCCAGCGAGTCACGTGCCCAGGCCCCCTCCGGGCAGGCTGAGGAAGGCGGATGAGCGTGGCGCCGGACCTTTCCCCACCAGGGCTGGAGGCGGAGTCCGCCAGGGACTTTTCAGGGACTTTCAGCTCTGTCCGAGGGACTTGTGAGGGACTTCGAGCCGCGTAAAGCAGTAAGGGTGTGAAAGCC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCAGCGGGGATGGACCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.40,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //