Array 1 46482-45614 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYMP01000014.1 Photobacterium phosphoreum strain FS-6.1 CFSAN065490_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 46481 28 100.0 32 ............................ AGGTTGTTTTTCAATTACAGTAAAAATGCCAT 46421 28 100.0 32 ............................ TTCCCAACGTGCAACCCTCCCGTATCTGTATA 46361 28 100.0 32 ............................ AAGGCGACAACGGTTAGCTGCTGAACCATTAC 46301 28 100.0 32 ............................ ATATTCAGTCAAAACAGCACGAACAACATCAA 46241 28 100.0 32 ............................ TTATTTGCGTCATGGCCAACTGTAAACGATGC 46181 28 100.0 32 ............................ ATACAAAATTTGAAAATCAACCAAAAAGGCTT 46121 28 100.0 32 ............................ TAATGCACAAACAGTCGCAGCCCTTGTCGTGA 46061 28 100.0 32 ............................ AAAGAGCTAGTAATGGCTCGCTTGCAAGTATT 46001 28 100.0 32 ............................ TAAATGATCAGCCGTAAAAACACTGCCTTTAA 45941 28 100.0 32 ............................ GGTGGATCACGTACGCATGTAACGTGGTTTAT 45881 28 100.0 32 ............................ GATTGAATACGTTCAATCTGTTGTTTGCTGAT 45821 28 100.0 32 ............................ GGACACTGACAGTAAACTTAGCATTGCTTTTA 45761 28 100.0 32 ............................ GTATATTTTAACGACATGTCGTGCTTCGCGTT 45701 28 100.0 32 ............................ AAATGGGGTTAGTGTCGTTCAGGCTAATGATT 45641 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACACGCGTGTTACGGCTATTACGGCAATTCCGAGTGATATCAAAGGTTATCAAACCGTTAAGCGTGTGCAGACCAAAAGTGCCAATAACAAGCGTAAGCGTTCAATTGCTAAAGGTTGGATCAGTGCAGATGAAGCGATCCATGCTATTCCTGATACAGCCGAGCGTAAGTTAACCTTGCCTTATGTTCAAATACAGAGCTTATCTAATCAGAATGTTATGCGGGTATTTATTGAGCATAGCAAGGTAGTTAGTGATGTAACGGATGGTGTATTCAGTAGTTATGGATTAAGTGCCACCGCAACGATCCCTGTGTTTTAAGTGTTGTTTTGATCGTAATATCAATAATGGGTTAGATGAGTATTCATTTAACCCTTTTTTTTAGCCTGTATTAGTTGCATTTAAAATCAATGGGTTATAAAGAGTAGATGGAAAAGGGGTAAAAGAGAATTTTTAGGGTTTTATTTAAATTAAACAATCGCTTATTATAGTTAAGCTTCA # Right flank : TAACTAAAGTACACCGCGAACGTATTCTGCTTGTTCACTGCCATATAGGTAGACATATGCGTTAGCCGCATTTTTATTCAATCTGACAAACACAAAACATTTCGCTAATAAGCCATATTATTCATATTGTTAATAACTGTTTTCTAAATCGTTGTAGGTTGGGGCAGCGATGTTTACTATGTGCTACAAAGGATTTGTCGCTGTTCGGTAAAATAAATGAAGAAAGATAAATACAATAATATTGCGGATCATATTTTTAAAGTAGATGCAGTAAAAATAGCGGTTTATGAGGTTATTACGCATAAGATGACAGCATATCGGGCTGAAATTGTGTATGGAGTAACGCCTAACACACTGAGTCGTTATGTTAAAAAATTTAATGCTGAATTAGCGTATCTACAGGCTTTGGGTTTAAAAACTAAATAATATTATATGAAGTCCAGCGCCTGCTGGACTTTTTGTTATTAGAACAAAATCTATTGATAGTCATGATTATTGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 55032-57202 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYMP01000014.1 Photobacterium phosphoreum strain FS-6.1 CFSAN065490_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 55032 28 100.0 32 ............................ TTCGACACCTTTCTGTGATCAAGGTGTTATCG 55092 28 100.0 32 ............................ AGTAACCGCCTTGAATGTTGATAACACTTCAT 55152 28 100.0 32 ............................ AATGCGCTAAATCAATCGCTATCGACTCAATT 55212 28 100.0 32 ............................ AAGCACGATTGCCATATCAGCCCAACGACCAT 55272 28 100.0 32 ............................ ATGAATCATTGTAAAACTTTGATCTTTATATC 55332 28 100.0 32 ............................ GTGAGCATTTTAGGTGGTGAATTTAACGTTAC 55392 28 100.0 32 ............................ AACGCTTGTCGGTATCAAAAAACAATTTAAAA 55452 28 100.0 32 ............................ GTTAACACTGCTGATAAAATAGAGATTAAAAA 55512 28 100.0 32 ............................ CACTACAGCACCCGCTAACGGGTTGAACGCTT 55572 28 100.0 32 ............................ TGCTGGGTTATTTGAACCTTCTTTTGCTCGTC 55632 28 100.0 32 ............................ CTGATTTCAGCATGAATCATATGTTGATTGAG 55692 28 100.0 33 ............................ GTTAATAAATTGTCTAACTTGCCCTCGATTCCA 55753 28 100.0 32 ............................ TGCGGTGGCGTCAGGGATGGCAAAAATAGCGT 55813 28 100.0 32 ............................ AGCGGGGTTAGTGTTGGAATTGCCCGACTTAG 55873 28 100.0 32 ............................ TGAAAAGCAAGAATCTGCTTTAGATAGTTCTG 55933 28 100.0 32 ............................ AAGTGGCTGGCATGACAGCCGAAGTTAAAAAG 55993 28 100.0 32 ............................ CGAATCTTGTGTTACGAGACGTTCGGCGGTGA 56053 28 100.0 32 ............................ TCAAGAATATTCTGTACAGCAGTTTGGGCACC 56113 28 100.0 32 ............................ GTTCATTTCCCGTCAACTCAGAACTTATCACT 56173 28 100.0 32 ............................ ATGATCATGCGTCCACTCCCTTGTTATCTTGT 56233 28 100.0 32 ............................ TGTGAGCACCTTACCCTGAGCGTTTAGAATCT 56293 28 100.0 32 ............................ TTTAAGTAAAACGGCATGACTGCCAAGGGGTA 56353 28 100.0 32 ............................ ACATAGGTTCTGTTAAATTTGCGTGATATGTT 56413 28 100.0 32 ............................ ATCAGATATTTGTAAATAACCAATATCATTTT 56473 28 100.0 32 ............................ TAATCGGTTTATCAATGATATTGATGGCCGTA 56533 28 96.4 32 ...........C................ TGGTTGAAGTTGGCATCATCTACACATACCGA 56593 28 96.4 32 ...........C................ ACCACCTAATTTTCCCGTCACGACCCAAACAG 56653 28 96.4 32 ...........C................ TGACGGAATCCAACCCAGCAACCTATTTTTTA 56713 28 96.4 16 ...........C................ AAGCAACGTGCTGATG Deletion [56757] 56757 27 78.6 32 C.AA...-A..C................ AGAATGTCACCCCTAGAAAACCGAAACGTCTC 56816 28 96.4 32 ...........C................ GTTCATTACTTCGTGACCGAAATTGAAGGTGA 56876 28 96.4 32 ...........C................ GGCAGCCGAGGCCGCGCCAACGTGTGAGCAAT 56936 28 96.4 32 ...........C................ AGGGGGGGAAATATCAATAGTGATTCCTTTGT 56996 28 92.9 32 ...........C.....T.......... ACATCACCGTAACGCGTCTTAGCATCAGAGCT 57056 28 96.4 32 ...........C................ TGCAACGATTAAACCAAAAGTACAAATTTGCG 57116 28 96.4 32 ...........C................ AGCAAGCAAACCTTTACGTTGAGACTCATGAA 57176 27 82.1 0 ...........C........G..-T..T | ========== ====== ====== ====== ============================ ================================= ================== 37 28 97.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCTACTTCATTAGCTGAAAATAAGGGTGTCCCGCCACCACCACAAAAACCCACCAGCACCCCTGCTTTGGCTAATTCACGCATTGCCGCTTGGGTAATCGATGTGCCTGTTCCGAGCATTATGGCAGTCGTGTTTGCTATAGGAATATTCCAATACAATGATTGCTTACCTTCGTCAGTCACATATTCAACCCGCCCACCATTCACTAACACTCGACAATGTTGTAAATAATAAAGATTGGCACGTTTTGAATGAATAATGGTTTTCAGCTCACTCGGTGTGAAAGACTTAGCGCACATAGCGGTCACCAACAGTAAAAAATGCATTATATACACAGATACGCATAATGCGTTTAGAGTGTAATCACAAATACCCTTTTTATTTGGTAACTATTCAGGCTATATAAAACAACAACTTAAAATATCAGTTTAAAAAAGGGTTTTTGGTGAGAATTTACTGTTTGGCTTTTATAAGCAATAACTTATACTAATAGTGCTTCA # Right flank : TTACTGGCAGCAGCCATGGCTTCTTTGATTTCATCAGAGCCATAGCCTTTTGATGAAAGATAAGCATAGGCTTTACTTTTATCTTTAAAATTCGACAAATCAAACCGCTTTTTCGCTAACACTAATTGGCAATTTTCATAAAAATCGACCTCACCTGCTTCCTCTAAATCATAGAAGACTTGCTCAAGATTAGTAATATCAACATGCTTCATTTTAAGCTCTTGCTTGATCACTGTTTTGCCTTTGAGCTTACGGACTAACTTCAACACTTCTGTTTCAAGATCGGCATTCATGCCTTTGATTTTTGCTTTAGTTAATAGCGTATCGGCAGCATCGTGTTCTGCAATCGCTCTTGAAATATCTTGAAAACTATATCCTCGCTTAGTGAGATCATTGGTTATTTTCTCTTTGGTGGTTTGGCTAAAATCATCATAACTATCTAAACGACTTTTGATCATATCAAGTTCAGACACTTGTTTTTTCTCCATAATATCAACTAA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //