Array 1 321-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYXO01000028.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM N38885 N38885_contig_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 320 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 259 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 198 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 137 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 76 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : GGAGCGTTTAAAAATGCTCGATACGCTCCAGCAGTGTTCCCCGCGCCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5-582 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYXO01000018.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM N38885 N38885_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 66 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 127 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 188 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 249 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 310 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 371 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 432 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 494 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 555 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCATG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16851-18710 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYXO01000018.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM N38885 N38885_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16851 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 16912 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 16973 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 17034 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 17095 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 17156 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 17217 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 17278 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 17339 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 17400 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 17461 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 17522 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 17583 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 17644 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 17705 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 17766 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 17827 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 17888 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 17949 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 18010 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 18071 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 18132 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 18193 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 18254 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 18315 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 18376 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 18437 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 18498 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 18559 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 18620 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 18681 29 96.6 0 A............................ | A [18707] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //