Array 1 83374-81051 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITL01000010.1 Pseudoalteromonas porphyrae strain UCD-SED9 scaffold_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================================================================================== ================== 83373 28 100.0 32 ............................ GTAAAAACATGAATGAACCCCGTTGTAGCTAG 83313 28 100.0 32 ............................ ATCACCTACGTAGTGTATTATTGGGCTGCCGC 83253 28 100.0 32 ............................ GTACCGAAATAATACTTCAAGCCATCCACATC 83193 28 100.0 32 ............................ TTCTTCCAGTTTTCTACAATACCACCTATAAA 83133 28 100.0 32 ............................ ATGATACTGTTTACCATCCTCAGCATCTTTGA 83073 28 100.0 32 ............................ ATCAGAGCATTTACAGCGGCGCCGTTTGCTGC 83013 28 100.0 32 ............................ ACTGGGAATATAATCTCATTGTAAATCTCCAT 82953 28 100.0 32 ............................ ATTTTTGCCAGTTATCATTACACCTACATTAG 82893 28 100.0 32 ............................ ATATATTTCGCACGAACTACCTGAAGCGAATG 82833 28 100.0 32 ............................ AGTTTAGAGCGGACGTGGCGGCTAATCTTGTT 82773 28 100.0 32 ............................ TAATGCAAGTAATCAGCTTTTAATAAGTGGAG 82713 28 100.0 32 ............................ TCATGTACGATTATCGCCTTCTTCCAGTTTTC 82653 28 100.0 32 ............................ CGCTTTAGCTCGCGCAACGCAAGCAAGAATGG 82593 28 100.0 32 ............................ TTTGGCGCACCTTCTGCGACTGAATTAAATTC 82533 28 100.0 32 ............................ TCTGATTAATATATTTTTATGCGCTAACTAAA 82473 28 100.0 32 ............................ TTCAGTATGAAATAAAACATAACAATCACCCG 82413 28 100.0 32 ............................ TTATACAAAAACATTTACAGATTTTCTTGTCA 82353 28 100.0 32 ............................ TATGCCTATTTAGGCTAGGAAATGGTCGGTTC 82293 28 100.0 32 ............................ TTCTAGCACAATGCGCCATTTAGGGTGCACAA 82233 28 100.0 32 ............................ ATAATTATAGAGGACTACGCTGAGTTTGATTA 82173 28 100.0 32 ............................ TAGCAGTAGCTTTGCGCGTGACTCGGTTTATA 82113 28 100.0 32 ............................ TAGAAGGTTTAATGGTTGGTACTGGCATTACG 82053 28 100.0 32 ............................ GCACAGGCATGAGCTTAAGCAGTCTTAGCAAG 81993 28 100.0 32 ............................ GAAAATGTCAGTCATCTGCTTATTGATTGCGC 81933 28 100.0 32 ............................ AGTAACGAAAATATCAGTTGCACCATAGGGTA 81873 28 100.0 32 ............................ CCGTTCTTGTATTACGGGGTATAACTCCCATC 81813 28 100.0 32 ............................ TTGTTAGTTAATAAAACCTAAATTAAATTGCC 81753 28 100.0 32 ............................ TTGCTGCGACCATCCATACACACCACTAAAGT 81693 28 100.0 32 ............................ TTAAGAAAAAAGGGGCGGTTTTACCCGCCGTT 81633 28 100.0 32 ............................ GCATGAATATTACCAAGTAGATATGTGTAATC 81573 28 100.0 32 ............................ GCTTGGCTTACAACGTCCGCTTGGCTTACTTT 81513 28 100.0 32 ............................ TTATCCATTGACGTTGTTTTAATGGTTGCGAG 81453 28 100.0 32 ............................ TGAAAATTATAATGCTAAAGATGGTATTAAGA 81393 28 89.3 107 .........................GTG ACGATGGACCGAAACGAAGTTTCGCAGCCTGAGGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCATGGATGGATTTACACGCTAATGTTGGTTCAACGTTA 81258 28 100.0 32 ............................ GAGCATGAATGATTATTTGTCATCGCTCGAAA 81198 28 89.3 32 .........AG.A............... GTAATGTGTTAATCGTAGGCGCGTCAGGTAGC 81138 28 92.9 32 ..........G.A............... ACATACGCATCGACCCCGCAGCGATGTCACAC 81078 28 85.7 0 ............A............GTG | ========== ====== ====== ====== ============================ =========================================================================================================== ================== 38 28 98.9 34 GTTCACTGCCACGCAGGCAGCTTAGAAA # Left flank : ATTAAGTCAGTTAAACCAGTACCAGAAAATGTGACCTATGCGGCTTTTGTTAGACAGCATGTAAAAGGTGAGGCGCGTATAGAAAAAGATATGTTAAGTAAAGCACAACGTTGGGCTGAAAAATCAGGTCAACCGCTTGATACTTGTTTAGCAGAGCTTGAAAAGACTAAACCCAAAGCCGTTAACTCATTACCTTTTATTTGGTTAGAAAGCCAAGAAACAAAACAACGTGATGCAGCTAACAGTAGAAAATTTCCACTATTTATCAAAAAGGTAGAAATTGGGAAAAAACAAACAGGCATATTTAATTGTTATGGTTTAAGTGTAAATCACAGCAATAAAGAAAAGCTGGCTAGTATTCCCCAGTTTTAACCTTTATTTTTGCTCTTTAAAAATTAGAAACTAAAACAATAAGTTACAACAGCGCTAAAAAATTAGGTAAAAATAGATAATTTTACCTAATTGCCTGTTGTAACTTATTTTTTGCCTGATATTCTATT # Right flank : ACGATGGACCGAAACGATTTACCGAATAAACAGTGCAGCCTGAGGAAATGAGGTCATGGATGACCGATGTAACCAAGCTCCATGGATGGATTATAAATCGCTAGCTTAGCGTGATCATTTGGGGTTTCTCGCGCTAAAGCACGACCTACGGTACTGGTAGGTGATGAGTGACCGGTGTAACCAAGCTCCATGGATGGGTTATAAATCGCTAGCTTAGCGTGATCATTCGGGGTTTCTCGCGCTAAAGCACGACCTACGGTACTGGTATTTAGGTGATGAGTGATCGATGTAACCAAGCCCTTGGATGGATTGTAAATCGTTAGCTTAGCGTGATTATTCGGGGTTTCTCGCGCTAAAGCACGACCTACGGTACTGGTATTTAGGTGATGAGTGATCGATGTAACCAAGCCCTTGGATGGATTGTAAATCGCTAGCTTAGCGTGATTATTTGGGGTTTCTCGTGCTAAAGCACGACCTACGGTACTGGTATTTAGGTGATG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCACGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //