Array 1 753-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ956362.1 Clostridium perfringens strain MJR7757A Scaffold1029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 752 30 100.0 35 .............................. TTTTGTGCATAAAGAACTTCTTCTTCTGTTTTCCC 687 30 100.0 35 .............................. ATTTATAAGGTTGATGGAAACATTAAGAAATACTA 622 30 100.0 35 .............................. ACATAAGTATATTGATAATCAACTTGCTCTAATCC 557 30 100.0 35 .............................. TCCCTTTCAGTATTAGGAATACACTTTTTAGTAAA 492 30 100.0 35 .............................. TCAATTATCTTACTCGTAGCTTTAGGCATATATTT 427 30 100.0 37 .............................. CCCCAACCCATAAAAGGGGACATTTTTTCATTTCTGC 360 30 100.0 36 .............................. GAGTTAAGACAAAGTATTGCTGGAGAATTTAATAAA 294 30 100.0 35 .............................. GCTGTAGTATTAGATTTCCTTTGAGCCTGAGCACA 229 30 100.0 36 .............................. TATAACTCCTCCTTGTAATAAAAAAAGAGCATCTAA 163 30 100.0 36 .............................. ATAGGATGTCTAAGCTCATGTGGTTTTATTGTAAAA 97 30 100.0 36 .............................. ACATATAATATCCCATTAGACTTAAACCTATTTATC 31 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 100.0 36 ATTGAACCTTAACATGATATGTATTTAAAT # Left flank : ATTTAAAATGGACGATTGCTTTAAGAGGTTATTATTATATTGAACCTTAACATGATATGTATTTAAATAAATATGGCTAAAGAAGTTAATAATATATGGGATGTATTGAACCTTAACATGATATGTATTTAAATTTATATGAGCCTTACAGACAAGATAAAAAAGATATATTGAACCTTAACATGATATGTATTTAAATATGTGATAAGTGCTGGCATAGATCTACATTAATAGTATTGAACCTTAACATGATATGTATTTAAATTTTCTGTTTCTGTCAAAGATATTTCTTTTGTAGCAATTGAACCTTAACATGATATGTATTTAAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTGAACCTTAACATGATATGTATTTAAATTTAGTAATATTGTTGTTTACTACATTTTGCGTAGA # Right flank : TA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 923-1735 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ956362.1 Clostridium perfringens strain MJR7757A Scaffold1029, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 923 30 100.0 35 .............................. TGCTACAAAAGAAATATCTTTGACAGAAACAGAAA 988 30 100.0 36 .............................. ACTATTAATGTAGATCTATGCCAGCACTTATCACAT 1054 30 100.0 35 .............................. ATATCTTTTTTATCTTGTCTGTAAGGCTCATATAA 1119 30 100.0 36 .............................. ACATCCCATATATTATTAACTTCTTTAGCCATATTT 1185 30 100.0 36 .............................. ATAATAATAACCTCTTAAAGCAATCGTCCATTTTAA 1251 30 100.0 35 .............................. GAAGGTGTGGAAGTAATAAATGTAGATCCACATAC 1316 30 100.0 36 .............................. TATCAATAATAAAACTTTTAACGCTTGGATAGTATT 1382 30 100.0 34 .............................. CTAATAAAATTATTTTTGTATTTGTGATTGAATA 1446 30 100.0 35 .............................. GATGATTACCAATATATATTAACTTCAACTGAATC 1511 30 100.0 36 .............................. ACCTAGAGTAGCAGTATTATTCCAAGAAACTTATAG 1577 30 100.0 34 .............................. GAAATAAAATGACTTTAGTTGGTTTAAGTGGTCC 1641 30 100.0 36 .............................. GTTAAAAGCTAAACAAACTTATTTGCAAGAAAAATA 1707 29 96.7 0 .............................- | ========== ====== ====== ====== ============================== ==================================== ================== 13 30 99.7 35 ATTTAAATACATATCATGTTAAGGTTCAAT # Left flank : TCAATAAATATATGCCTAAAGCTACGAGTAAGATAATTGAATTTAAATACATATCATGTTAAGGTTCAATTTTACTAAAAAGTGTATTCCTAATACTGAAAGGGAATTTAAATACATATCATGTTAAGGTTCAATGGATTAGAGCAAGTTGATTATCAATATACTTATGTATTTAAATACATATCATGTTAAGGTTCAATTAGTATTTCTTAATGTTTCCATCAACCTTATAAATATTTAAATACATATCATGTTAAGGTTCAATGGGAAAACAGAAGAAGAAGTTCTTTATGCACAAAAATTTAAATACATATCATGTTAAGGTTCAATTCTACGCAAAATGTAGTAAACAACAATATTACTAAATTTAAATACATATCATGTTAAGGTTCAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGA # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATATCATGTTAAGGTTCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [5.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 1319-1681 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ956332.1 Clostridium perfringens strain MJR7757A Scaffold769, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1319 33 97.0 32 ...............................C. TTGACAAAACCCTAATAAACCTTTTATTTTTA 1384 33 100.0 33 ................................. TAGTTTCGGTGTATTAGGTGAAATTCTAAATGG 1450 33 100.0 33 ................................. AGATATTCTACTATAATATTTAATATCTATATA 1516 33 100.0 32 ................................. AATTTCTTGTGCAATAGGTTCTAAAGCTTTTA 1581 33 97.0 35 ...............................T. AAATATCTCCTATATCAATTAAAATCTTTCCACCC 1649 33 93.9 0 ...............................NN | ========== ====== ====== ====== ================================= =================================== ================== 6 33 98.0 33 AATTGAACTTTAACATGGTATGTATTTAAATAA # Left flank : CATTTCTGATTGAACTTTAACATGGTATGTATTTAAATTTATGTCTTATATTGAGGAGGGCGAGTATTGTGTATATTGAACTTTAACATGGTATGTATTTAAATAATTTTAGAGTTGCATTAGCAAGTTCAACACTATCCATTGAACTTTAACATGGTATGTATTTAAATTAATGATATGTGAGCTTGAAAAAGATGATGATATAAAATTGAACTTTAACATGGTATGTATTTAAATTATTTAACAATAGAGATTTTCTAGCATACAATTTTGATTGAACTTTAACATGGTATGTATTTAAATCCCCAACCCATCAAAGGGGACATTTTTTCATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAACTTTAACATGGTATGTATTTAAATAATTTTTACCTATCGTCATAACTTTTAGCCAAGAC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGAACTTTAACATGGTATGTATTTAAATAAAGCTTTTTCCGCATCCTTGATTTTTTCTTTAAGCATTGAACTTTAACATGGTATGTATTTAAATCAGTTTATAACCTTGTCGACTTCTAGAACCCTCCCAATTGAACTTTAACATGGTATGTATTTAAATATAATAAGAACCTCATTTTTATATATAAGCTTAGTATTGAACTTTAACATGGTATGTATTTAAATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAATTGAACTTTAACATGGTATGTATTTAAATGATTCATTTTGTAGATCACCTTTAAATTTCAAATTAT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTGAACTTTAACATGGTATGTATTTAAATAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.82%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 2008-1780 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ956332.1 Clostridium perfringens strain MJR7757A Scaffold769, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2007 31 100.0 34 ............................... ACTAAGCTTATATATAAAAATGAGGTTCTTATTA 1942 31 100.0 35 ............................... TGGGAGGGTTCTAGAAGTCGACAAGGTTATAAACT 1876 31 96.8 35 G.............................. GCTTAAAGAAAAAATCAAGGATGCGGAAAAAGCTT 1810 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 4 31 99.2 35 TATTTAAATACATACCATGTTAAAGTTCAAT # Left flank : TAATGGTAAGACAACTTTAAATTTTAGTGGTGGTAATTTAAATACATACCATGTTAAAGTTCAATTAGATTTGATGATAAAGAAAAGAACCCTAATTTCTAATTTAAATACATACCATGTTAAAGTTCAATACTTTAGGTGTTACTGTTAGTTTGCCAACTGCTCAATTTAAATACATACCATGTTAAAGTTCAATTAGGATTATTGCAGAGGGCAAGGATGGATTAACTTTATTTAAATACATACCATGTTAAAGTTCAATAAATTAAGTCTAGAAAAAGAGTTAGTTTTATACAGATATTTAAATACATACCATGTTAAAGTTCAATAATTTGAAATTTAAAGGTGATCTACAAAATGAATCATTTAAATACATACCATGTTAAAGTTCAATTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAAATACATACCATGTTAAAGTTCAATTGGGTGGAAAGATTTTAATTGATATAGGAGATATTTTAATTTAAATACATACCATGTTAAAGTTCAATTTAAAAGCTTTAGAACCTATTGCACAAGAAATTTTATTTAAATACATACCATGTTAAAGTTCAATTTATATAGATATTAAATATTATAGTAGAATATCTTTATTTAAATACATACCATGTTAAAGTTCAATTCCATTTAGAATTTCACCTAATACACCGAAACTATTATTTAAATACATACCATGTTAAAGTTCAATTTAAAAATAAAAGGTTTATTAGGGTTTTGTCAATGATTTAAATACATACCATGTTAAAGTTCAATTGTCTTGGCTAAAAGTTATGACGATAGGTAAAAATTATTT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATTTAAATACATACCATGTTAAAGTTCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 2179-2802 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ956332.1 Clostridium perfringens strain MJR7757A Scaffold769, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2179 30 100.0 37 .............................. ATCTGTATAAAACTAACTCTTTTTCTAGACTTAATTT 2246 30 100.0 36 .............................. AAAGTTAATCCATCCTTGCCCTCTGCAATAATCCTA 2312 30 100.0 35 .............................. TGAGCAGTTGGCAAACTAACAGTAACACCTAAAGT 2377 30 100.0 36 .............................. TAGAAATTAGGGTTCTTTTCTTTATCATCAAATCTA 2443 30 100.0 37 .............................. TACCACCACTAAAATTTAAAGTTGTCTTACCATTACC 2510 30 100.0 36 .............................. GCAGGATTTCCAACAATAGAAACATCCTTAGGAATA 2576 30 100.0 36 .............................. TATAATATACTGGTAAGTGTTCTCCAATTTAACTTT 2642 30 100.0 35 .............................. TGAATTGGAAAATTTGCAATTATATTAATATTTTT 2707 30 100.0 36 .............................. CTTTTTAGGTAGGAATAAATACAGTGTACTTCATTA 2773 30 86.7 0 .......C......GTA............. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 98.7 36 ATTGAACTTTAACATGGTATGTATTTAAAT # Left flank : TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGAACTTTAACATGGTATGTATTTAAATAAAGCTTTTTCCGCATCCTTGATTTTTTCTTTAAGCATTGAACTTTAACATGGTATGTATTTAAATCAGTTTATAACCTTGTCGACTTCTAGAACCCTCCCAATTGAACTTTAACATGGTATGTATTTAAATATAATAAGAACCTCATTTTTATATATAAGCTTAGTATTGAACTTTAACATGGTATGTATTTAAATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAATTGAACTTTAACATGGTATGTATTTAAATGATTCATTTTGTAGATCACCTTTAAATTTCAAATT # Right flank : AAATAACTTCGTAAAATATATATTTTATGAATAAAATTGATATATGTATTTTTATATAAGGACTTTAAATATTAAATTATTGGAATAGGTATATTGCTATGTTTCTAAGTTGATTAAAATATTTATATTATTAACTAACATTTTATTAAATAATTAATATTACCAGAATATATAAATTTATAAAATAATTACTTAATTTATAAAATTTACTAATAAAAATTAGAATTATATCTATAATAAGTAATATTTTTATAAAATAAAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACTTTAACATGGTATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [78.3-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 1018-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ956369.1 Clostridium perfringens strain MJR7757A Scaffold1095, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1017 30 100.0 36 .............................. CCAAAAATTCTCACTAAATCTATTCGTTTCTCCATT 951 30 100.0 36 .............................. TTTAAATGGGAATGCATTTGAAACTAATAATAATTA 885 30 100.0 36 .............................. TCTAACATTCTTGTATTATTAGCTAGGTTCTTGAAA 819 30 100.0 35 .............................. TGAAGCTGGAACTATCATCGGTGTTAAAGCCTCTA 754 30 100.0 35 .............................. ATGCATCATCTAGGTTTCTTGCAACTGTTTTAGTC 689 30 100.0 36 .............................. GATTCCGCATTAAAATTATTATTTATATTAGAATTT 623 30 100.0 35 .............................. ATTTTTTTGAAATTTTCTTTTATTTTTATTTGCCA 558 30 100.0 34 .............................. TTCACATCCTGTAATGACCAAATTATTTTCCCAT 494 30 100.0 36 .............................. GTATTTGTCCCGCTTTTGTACCGCAAATGTACCAGT 428 30 100.0 34 .............................. ACACATATATCTATGCCTAGTAATGCTGTTATGA 364 30 100.0 37 .............................. AATATACCTCAGTTTTAACTAATGAAAGAATAAGAAA 297 30 100.0 36 .............................. AAATTATCTTGAAGAAAAATGGGGAGTAGTAAGTGT 231 30 100.0 36 .............................. TATTGGTCCTAGTTCTTTAATTAAACACCATAATTG 165 30 100.0 36 .............................. TGAATTAGATTATGATACAAGTTTAGGAATATCACT 99 30 100.0 36 .............................. AAGAAAGGCAGATAACTGTCAAATAAATGTCTATAT 33 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 100.0 36 ATTTAAATACATATCATGTTAAGGTTCAAT # Left flank : TCATGTTAAGGTTCAATAAATTCTAATTTAGATGTTGCTAAAAGTTTTGCTA # Right flank : TGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATATCATGTTAAGGTTCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 791-1016 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ956179.1 Clostridium perfringens strain MJR7757A Scaffold70, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 791 30 100.0 36 .............................. AATATCTTTTGCCGTTTCTTTGACAGGAATAAATAT 857 30 100.0 37 .............................. TTTTAGAATTCCTAACATTACATTTTATGGTTAAAAT 924 30 96.7 34 ............................T. TGATTTAGAATATGATACTTTAAACTATGCATAT 988 29 90.0 0 ..............-G.............T | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 96.7 36 TGAACCTTAACATGATATGTATTTAAATAA # Left flank : TTAAATAACGATAATACAAAAAACACCCTATTTCAAGTATAATTGAACCTTAACATGATATGTATTTAAATTCGTCCGCTTGAATAGCATCAAGCATCTTCTGTCTATTGAACCTTAACATGATATGTATTTAAATAGATTGGACAATTAGGAGAATCTATATACGGATTAAATTGAACCTTAACATGATATGTATTTAAATAAAAAGTCTTCCCTTTTAAAACCTCTACCTTCTTGATTGAACCTTAACATGATATGTATTTAAATTATAATATAGGAGCTTTAGTTAGATATATCTTTAATAATTGAACCTTAACATGATATGTATTTAAATGCAAATAGAAGAATCTTCGGAACTTTCTAAACAAAATTGAACCTTAACATGATATGTATTTAAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTAATACTGAATTCACTAAAAATTAAGTATCTAATTTATATTATTTTTCAGTATAATATAATTACTTAATGTCTTTCTATATAAAGTTTTATAATTAAGTAGGGGTATAATATGAAAAAACTAGCTTTTATTATAAAAAATATTTTGAAATTCTGGTATTGGCAAGATATAGAAAAGTCTAATATTTTTATAAGGCTTATGAATCTTGGAATGGCTTTATTTTTAAGCTTTTGTCTTTTAGTATGGATGTATGGAGAAAGCTTTAATATTATATTAAGATCATTTATAAGTATTTATGGAGTTCTATGTTTCATGTCTTTTTGGCCAGTTTCATATTTATTTGATGAAAAGGACAAGGTAAAAGGAAGTACATTTTACATATTTCAAAATATTTCAGTATTTTTCTCTATTATTATATTAGTTGTTTATATACTAAAAAATTATGATAGAGTTAAAAGCTAGTAATATAATCAAAAGCAAACCAATATAATTTAAAAAAT # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAACCTTAACATGATATGTATTTAAATAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 1150-397 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ956191.1 Clostridium perfringens strain MJR7757A Scaffold99, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1149 30 100.0 35 .............................. GAAGATGCTAAAAATGAAATTGATATGTTACAACC 1084 30 100.0 36 .............................. AAGATTCCTTACTACTGAAGTGGCCAGACTTTCAAA 1018 30 100.0 36 .............................. TAACTTGCCTCCTTAACTTTAATATGCTAAACTTTC 952 30 100.0 36 .............................. ATAGGAACATTAAGAGCTTTTGACAGCTTAAAGCCA 886 30 100.0 36 .............................. TAAAGCAGCTTATATTGACTTTTGTAAAACGGGTTT 820 30 100.0 35 .............................. GTAACTCAACTTAGAGATAGTGTAACAACAGATAT 755 30 100.0 36 .............................. CCAGCCTCTAGTTTATTTAAGGATAGTGAACTTATT 689 30 100.0 36 .............................. TAAGAAATTATGATTCTTTTTTTATAAATAAAATTA 623 30 100.0 36 .............................. GTAAACAGCGAATCCCTCTGATACTAAGGGAATGAA 557 30 100.0 35 .............................. GCAGACCAAGCAACTATAATGGAGCTTAAGAAGTT 492 30 100.0 36 .............................. TTTTTAGAATAACTTGAATTAAATGTATCTTTGTTA 426 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 12 30 100.0 36 ATTGAACTTTAACATGGTATGTATTTAAAT # Left flank : CAAGTGTACCTAATGCAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATACTTAATACTTCCAACATATATGGTAACACTAAGCTTATTAAGTTATAAGGTACTTAAATCTAAACCTCAAAAAAATAATCAAGATAAGTAATTTAAGTTTTATAATAAGAATTTAAAAGTAAAAATGGACATGCTATCTGTCCATTTTTACTCAATAATTTGGAAATAAGATAGTTTTAAAAATAATGGAAATAAATAAAACTTTACCAACCTAAAATTATATAAAATTATCTTTCAGACCTTGAAATAACTAGAGTATAAGCTAATTTTATATTGGTGGTTTAAATTTAAGTAAGACACTGGTAAAATAATAAGAGAGGTATTGAAATAACTAGCTTAAAGATAAATATAAAAACAAAGAAATGGCTATTTTACAAGC # Right flank : TGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTTTGAAAGAAAGAATAATGTATTATCTAAATTGAACTTTAACATGGTATGTATTTAAATCCATTTTCATATTTGCTCTTATAATTATCTATATAGATTGAACTTTAACATGGTATGTATTTAAATTGTTGTTTCCCCAAGCTACAATTTTATTATAAGTATATTGAACTTTAACATGGTATGTATTTAAATGTTTGAAAAGCATATCCTGATGTTAATATTTCTATCATTGAACTTTAACATGGTATGTATTTAAATACTAGATCCTAACCAAGTAAAAACAATAGCAGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACTTTAACATGGTATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //