Array 1 483798-485900 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKE01000002.1 Salmonella sp. zj-f60 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 483798 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 483859 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 483920 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 483981 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 484043 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 484104 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 484165 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 484226 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 484287 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 484348 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 484409 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 484470 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 484531 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 484592 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 484653 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 484714 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 484775 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 484836 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 484897 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 484958 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 485019 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 485080 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 485141 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 485202 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 485263 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 485324 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 485385 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 485446 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 485507 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 485568 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 485629 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 485690 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 485751 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 485812 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 485873 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 503533-505514 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKE01000002.1 Salmonella sp. zj-f60 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 503533 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 503594 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 503655 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 503716 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 503777 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 503838 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 503899 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 503960 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 504021 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 504082 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 504143 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 504204 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 504265 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 504326 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 504387 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 504448 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 504509 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 504570 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 504631 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 504692 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 504753 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 504814 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 504875 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 504936 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 504997 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 505058 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 505119 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 505180 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 505241 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 505302 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 505363 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 505424 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 505485 29 100.0 0 ............................. | A [505512] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //