Array 1 31634-32821 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRKO01000049.1 Escherichia coli strain 401624 ctg7180000024737, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31634 29 100.0 32 ............................. GCAAACAAAACGGCCACGTAAAGTGGAATGAC 31695 29 100.0 32 ............................. TGGCTATAGTATCACATGATTTCTATTTGTCA 31756 29 96.6 32 ............T................ ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 31817 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 31878 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 31939 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 32000 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 32061 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 32122 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 32183 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 32244 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 32305 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 32366 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 32427 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 32488 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 32549 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 32610 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 32671 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 32732 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 32793 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 48320-49264 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRKO01000049.1 Escherichia coli strain 401624 ctg7180000024737, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 48320 29 100.0 32 ............................. TCTATTCACCAAAAGAGGGTGATATTGTTATT 48381 29 100.0 32 ............................. ACGTCGGCACGAATTTTACCTGCTATTCGTCA 48442 29 100.0 32 ............................. CGTGTCTCGCAACAAATAGCGGGCGTCCGTGC 48503 29 100.0 32 ............................. CCGCACCCGTCCTCGTCGGCCAGCGTCCACGC 48564 29 100.0 32 ............................. CCGCGTCTCTATTCCGATTTGCCGCACTGCGT 48625 29 100.0 32 ............................. ATCGACATGCAGCGCGAACGGCTGCCCCTCAC 48686 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 48747 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 48808 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 48869 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 48930 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 48991 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 49053 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 49114 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 49175 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 49236 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //