Array 1 15895-17937 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMOM01000091.1 Vibrio cholerae strain EL2398 contig91, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 15895 28 100.0 33 ............................ TATACTGCTCACCTACGGTTTTGGCCGCACCGA 15956 28 100.0 33 ............................ CAACCAGAGGCGTACCGTCAGCGCGTTTCATCG 16017 28 100.0 33 ............................ TCAGCCGCCTAACCGAAGAAAACAAGCGACTGC 16078 28 100.0 33 ............................ TAATACCGTCATGCATCCACCACTATGATATTT 16139 28 100.0 33 ............................ CGTATTTTACATGCGCTGTAAAATCTTTATCTA 16200 28 100.0 33 ............................ TCGTGATAACCCATTAAACGCGATAGGTATCAC 16261 28 100.0 33 ............................ TATCGTTAGCAATAGACTGATCCAGAACAGAGC 16322 28 100.0 33 ............................ TCAAAAGCCCAGAAGCGCCACTCTGTCCCTTAA 16383 28 100.0 33 ............................ CTGCTCAATGCCACCTTCCGCACGACACATGCC 16444 28 100.0 33 ............................ CAGTGTGATTATGGACATTGGTACCCCTTATCG 16505 28 100.0 33 ............................ CATCAAGAGAGGCATTAAATGAGCTTAGAAGAA 16566 28 100.0 33 ............................ CTTAGTGATGGCTATATTTATCTGGGGGTGAAG 16627 28 100.0 33 ............................ CAAGAATTAGGGGGAGAATGTGCGCCATTGCCA 16688 28 100.0 33 ............................ TACAGAGCGCACTTCATTCGGGTTGATGGGTCT 16749 28 100.0 33 ............................ TGTCATAAGGTGGATCGGTCACTATCAAGTCTA 16810 28 100.0 33 ............................ CTATTACTTGCGCTACAAATGGCGCGTGAATCA 16871 28 100.0 33 ............................ TACTCGCATTTCGCCGCAAGGGTTAGCGTTTGC 16932 28 100.0 33 ............................ TTATACCATTAGTAGGTGGTGCCACTAACGCCC 16993 28 100.0 33 ............................ TGCTAGAGCACGTCGAAGATGCCATCGAAATCA 17054 28 100.0 33 ............................ CCTTTCTTACAGCCATACGTTGAGCCCATCTGC 17115 28 100.0 33 ............................ CCTTTCTTACAGCCATACGTTGAGCCCATCTGC 17176 28 100.0 33 ............................ TTCTCCACGGCGTTACTTTTGCAGCCTCAGAGT 17237 28 100.0 34 ............................ CTTAAGTCGCTTCAGAAAAAAGCCAGACCAACAA 17299 28 100.0 33 ............................ CGGATTGCTATTTGCAAGTAACTTAGTTGAGGA 17360 28 100.0 33 ............................ TGTAGATTTTTCAGCCTTAAAAGTCCAAGCATC 17421 28 100.0 33 ............................ CGATTGCAGCCAGTGTTAGTCAGCCAAGTCACG 17482 28 100.0 33 ............................ TAGTGGCGATCTGTAACTACGGGCATATCAAAA 17543 28 100.0 34 ............................ CAAAGCGCAAAAGCAAATCGCCTTAACCCGTGAG 17605 28 100.0 33 ............................ TTGTTATCAACTTGCCGGATAAAACGGACAATA 17666 27 96.4 33 .....................-...... CACCATCATTCCAGTGCATGACCGTGTTTTAGT 17726 28 100.0 33 ............................ TAAGAGCAAGTCGAGCTCTGATGATGACGTTAC 17787 28 100.0 33 ............................ CAGAGAGTATTGACGAGCAAGGTCAGCCACTTC 17848 28 100.0 33 ............................ CTCTTTAATCGAATTCCATAACGGTGACGTTAA G [17865] 17910 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================== ================== 34 28 99.1 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACACGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATCTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : AGTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATGGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTAGCTATAAACCTAAACCAGAGGGGATTTGTGACAACAGCTACGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGACTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //