Array 1 108119-106276 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXNK01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SLRe1501 NODE_5_length_170066_cov_64.5731, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108118 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 108057 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107996 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107935 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107874 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 107813 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 107752 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107690 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107629 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107568 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107507 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107446 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107385 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107324 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107263 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107202 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107141 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107080 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107019 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106957 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106854 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106793 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106732 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106671 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106610 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106549 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106488 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106427 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106366 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106305 29 96.6 0 A............................ | A [106278] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125193-124250 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXNK01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SLRe1501 NODE_5_length_170066_cov_64.5731, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125192 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125131 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125070 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125009 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 124948 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 124887 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124826 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124765 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124704 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124643 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124582 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124521 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124460 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124399 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124338 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124277 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //