Array 1 495699-498913 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062976.1 Neisseria sp. ZJ785 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================================================= ================== 495699 32 100.0 34 ................................ TTCCGCAGCCGCATGACAAGGTCAGGTTCGTGGT 495765 32 100.0 35 ................................ TGTTACTTTGTGTGTCCCATTTTTGGGGGTAGGTG 495832 32 100.0 35 ................................ TCACGAATGTCGTTGTCGCTGCCTTGTGCCCGCTC 495899 32 100.0 34 ................................ TTGCCCAGTATTTGAAGGCCAAAGCCGCCAATGA 495965 32 100.0 34 ................................ ACGGCCACGGTAGCAGAGACCAGCTATGCTTATA 496031 32 100.0 33 ................................ TAAAACCGTTGGCGATAGAGCTTACAGATACGC 496096 32 100.0 34 ................................ TTCGTCTATCCATGCAATATCTGCCGTTGTGCAG 496162 32 100.0 34 ................................ CTATTCAAAGATTTGACAACCTGCTTTTGGGTAG 496228 32 100.0 34 ................................ TGCTGGTGCAGGAAGCCCGTCTGAAAGCCTTGTT 496294 32 100.0 35 ................................ ACGGAACTGCCTGTCTATCAGGAACATAAATCGAA 496361 32 100.0 35 ................................ ACGGAACTGCCTGTCTATCAGGAACATAAATCGAA 496428 32 100.0 35 ................................ GTTTGTTACCAACCACCACACACGGCAGGGGATAA 496495 32 100.0 35 ................................ ATTAATATATTAACGGAAGTATAAATAAAACAGTG 496562 32 100.0 35 ................................ GGAACTGACTGAGCAACACTGCCTGCAAGTCTTCT 496629 32 100.0 35 ................................ CCGAAGTAAACGACAAAATTATTCCGAACCTGCCC 496696 32 100.0 34 ................................ GCCGTCTCGGTGCGGATATACACCGCCTTGCGTG 496762 32 100.0 34 ................................ TTTAACAATTAGGAAAAACCCGCGTTACGTGGGC 496828 32 100.0 35 ................................ GACGGCTACGGGTTCCCCGGGCGTAACCGCCCGTT 496895 32 100.0 37 ................................ GATGTATACACATGCTCGGGTCGGTGCATAGACTGCA 496964 32 100.0 35 ................................ CGAGAACGCCGAGCGAAAAAGCGGAGATAAGCAAT 497031 32 100.0 36 ................................ ATACGGTTCTCGAAAGTGTAGATACTATCCTCCTGC 497099 32 100.0 34 ................................ TCTATGGACTTATCCAGCACTGCACTGTTCGGTA 497165 32 100.0 33 ................................ TCGGCGATGTGGTGCTGACCCGTGTCGGTACAC 497230 32 100.0 34 ................................ CAGTTGCCGTATTTGCTGTCGTAATCTTCCGGAT 497296 32 100.0 37 ................................ ACTGCCTTAGAATATATGCTTACCCAACAGCATGCTG 497365 32 100.0 33 ................................ AACCCATCAACAGTATCTGCGCAAAAGTGGTCT 497430 32 100.0 34 ................................ TGTAGTGTTGACCGAGACGAGTGGGTACACCGCA 497496 32 100.0 34 ................................ ACTTGTCAGACTGCCCTGCGGGTGTTCGGCGACC 497562 32 100.0 36 ................................ AGGTTGGTTGCGAACGGATACAAGGCGGCCAGTTCA 497630 32 100.0 36 ................................ CGCATAATCATAGCCTAGCAGTCCGCATAAGCTGTC 497698 32 100.0 36 ................................ TGCTTACCCAACATCCGCGCCTGATTGACAGCAACG 497766 32 100.0 36 ................................ AATGGAGTATCCTGTAGCCTGTGTTGACTCTGACAA 497834 32 100.0 36 ................................ GGACATAGCGTTTACTGATTTGCAAATCGCAAACGA 497902 32 100.0 35 ................................ CAGGTCAACCAGAATGCCTGATGAATGCCAAAAAT 497969 32 100.0 35 ................................ AGATTTGAATCCTCGTCATTCAGATTTGAATCCTC 498036 32 100.0 36 ................................ TCCATCAATCGATAACTGGCATACTTCTTGCCGCTT 498104 32 100.0 81 ................................ AGCAAGTGTGTGATAATTTCGTAGGGTGTCGGCTGTGTGTTGAAACTACAACTGCCCGAAATAAGTTAAAAGATTACGGAC 498217 32 100.0 34 ................................ TTTACGGTACCCCTTGACGCTAGCCCACCCAAAA 498283 32 100.0 33 ................................ TCGAACTCAACGCCATAGAGTTTAGTCAGTAAT 498348 32 100.0 34 ................................ CTTTGCGGGAGGCTGTCTGAAAATACAGCCTTGT 498414 32 100.0 34 ................................ GCAGGGTACGTTCTCTGTTGTTTGCACTGTCAAA 498480 32 100.0 35 ................................ TATGGGCTTTTGTCCTCCATTGCTTTCAAGAAGAG 498547 32 100.0 35 ................................ AAGATGCCGAAGGCCGTATTTACGCGGCCATGCAG 498614 32 100.0 35 ................................ ACTTTTCTGATATTGCCTATTGTTGCAGCCATCTG 498681 32 100.0 35 ................................ CACCGTTCGGATGGATAAACAGAAAAAGACCGCCG 498748 32 100.0 36 ................................ ACGGATAAAATGCCCATGGAACCCGAATGGATAAGC 498816 32 96.9 34 ...........T.................... CAGACATTGAATTCCGACACGATAAGCCACAATT 498882 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================================================================= ================== 48 32 99.9 36 TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : AACAAGGGGAAATACTGTGCTGATGCTGATTACTTACGATATTGCTTTGGACGACCCGCAAGGCCAAGCGCGCCTGCGCCGTATCGCCAAACATTGCTTGGACTACGGCGTGCGCGTGCAATATTCGGTGTTTGAGTGCGATATTGCACCCGACCAATGGGTTGTTTTAAAAGAAAAATTGTTGAAAACCTATAACCCCGAAACCGACAGCCTACGCTTTTACCATTTGGGCAGCAAATGGCGGCGCAAGGTAGAACACCATGGCGCAAAAGCGGCGGTGGACGTGTTCCAAGATACGCTGATTGTGTGAATCGCTAACCTGCGGTGCTCATAAAAATGCGGGCAGGTTGGCGAAACAGGAAGGCTCTTTAACAATCAGGAACTTAGCAAAGCGTGTATGGCGGGAGAAGGCTGTGCTATACTCACTTTGCACCTCTTTCGGCGACTTTGGCGATTTAGGGCTGTAGAAGCATTGAGTGGTAAGGGTTTCCGAGGAGGCT # Right flank : CATTCTCCGAATAAAAGTATTATAGTTAATTAAAATAAAAACTACTCATTAATGCGGCCATAAAATTGCCTATTTCAGGCAGCACTTTTCGTAGATGCTTTTTAAGTAGATGCTTTTTAATGTTCGCCCATGCTTTTTCAATCGGATTAAGCTCTGGCGAATAAGGTGCAAGAGCTAAGATTTTATGCCCCTCTTTTTCTGAAATCTCTGCTAAAACAGACATCCGATGAAAGCGGGCATTATCCATCACGATAACAGATTGTTCAGTTAATTCAGGCAGCAATACGCCTTCAAACCATGCTTCAAATAAACGGCTATCCATCGTGCCTGAATAAATCATGGGTGTAATTAGATTACTTTGGTCTTTGATTTGAGCTGCAACCGGTGATGTGCGCCGGTATCGTTTACCACTGATTTGCGCTTTAACTGGAAGCCCTTTTGGTGAATAGGCATAAGGACGGTAGTAAAAAGTATCAAATCCTGTTTCATCAAGGAAAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 877608-875458 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062976.1 Neisseria sp. ZJ785 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 877607 35 86.1 30 A.......-.TT...T.................... ATATTTTGGCTTTTTTGATGTACCATATTT AT,C [877601,877604] 877539 36 100.0 30 .................................... GCATAGAAGCGGCACGGACGAAATCTTCAT 877473 36 100.0 30 .................................... GGTTCTACCGTGGCAATGGGGAGCGAATCG 877407 36 100.0 30 .................................... TTTAGCATTATCAGTTGACAACCGCGCCGG 877341 36 100.0 30 .................................... ACAAATCGTCTTGCATGTCGTCTGCGAAGA 877275 36 100.0 30 .................................... TGAAAAACGTATCGTACCCGTTCGAGTCGG 877209 36 100.0 30 .................................... CAGAGGTTGGCAAAATCTTCAATATCGCCC 877143 36 100.0 30 .................................... TGTTGATGAGCTTATAAAAGGTGTCGAAGG 877077 36 100.0 30 .................................... GCTACACCTCTGGGGATACCACTAAACAAA 877011 36 100.0 30 .................................... CGGGCGATGTTGCAAAAGTAGTCGTAAGGA 876945 36 100.0 30 .................................... TATCAGGATTGGCCGAAGCAGCCGGGCGAT 876879 36 100.0 30 .................................... TCAGGTGGTCTAGGTATCGAGAAAGTTCTT 876813 36 100.0 30 .................................... TACCATCGATTTCGCCTTTGAATTGTTTTG 876747 36 100.0 30 .................................... TTGTGCCATTTCCGGGCGGCATAGGACACA 876681 36 100.0 30 .................................... GAGACACAGTTTTTTTACTTTGGCCGTTTT 876615 36 100.0 30 .................................... TCAAGGATGTTACAAAGGCGAATGTGCCGA 876549 36 100.0 30 .................................... TCGTCTTGCTTACGCTCTTTAATAATCATC 876483 36 100.0 30 .................................... TGCTTCAATTCCCGTTCAGCCGATTCAAAA 876417 36 100.0 30 .................................... CAAATTACCGTCAACGGCGGCATTAATGTA 876351 36 100.0 30 .................................... TCAAATGCCGCAAAGCAGCACCTGAAGTTG 876285 36 100.0 30 .................................... CGGTGTCTGTCTTACAGTATTGCTTGTAGG 876219 36 100.0 30 .................................... TAAACTGATTAACCCCGAGCGTATGCCACG 876153 36 100.0 30 .................................... TAGCTATCAACGCAACATCTGTCCTGTCAA 876087 36 100.0 30 .................................... CCGACAACGGCGGTTACAGAAAGATTATCC 876021 36 100.0 30 .................................... TTTCAAGCAGCATTTGGGCGGACTCACCGA 875955 36 100.0 30 .................................... TTATGAATTCGGGCTTTTTGCCCTAGATAG 875889 36 100.0 30 .................................... AGACGGCATTCCTGAAGTGAATGGGGATAT 875823 36 100.0 30 .................................... GCTGCTATGCTTATACCTATTAAGGCTTCA 875757 36 100.0 30 .................................... CAATCAGATTTACCTATTCGGACCTTTCGC 875691 36 100.0 30 .................................... AGTACATCAGCAGTACCCATCAGCCAGCAG 875625 36 100.0 30 .................................... ATGTAAAAGGTTTATACGATGCATTCTTCG 875559 36 100.0 30 .................................... AACAGTATTTTTAACTGCTCTGACCGCATT 875493 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 33 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : ACCTGCCAGCGGCTGCCCACCGGCCAATCACGCAACTGATAATCCGACAACATCAGCCGATATTCGCCGCCATCTTTATCCCACACCTTCGCCGCAAACTGTACCCGCCGCTCATCACGACGCGGCAAATCGTCCACCACCACCGTCAACGCCACATCCTCCGCCCGCTCCAGCGGCCATTGCCGCCCCAACGCCGATTCCGTGCGCCATACCCCATAAGCCATACCAGACAACACACATAACAACACTGCCAATGGTTTCCAATACCAAGCCGCCAATAAAATTACCCCAAACACCGCAAGCCAAAGCCATAGCGGCGGCACCACAGGCAGCAGGAATGACACCAATACCCCGAACACCCAACACGGCAATACATAACGTAACATAAATTATTTCTCTTGTAATAGTTTTTATTATGATAAATTAGAAATAACGAATGTGCATAGAAAAAAGGCCGTCTGAAAGTTTTCAGACGGCTTTATGCTTGATTATTGATTAGA # Right flank : TAAACCAAGCGAAAAGCCTTATTTGATAAGACTTTCCGCTTGGTTTTTCTAATTTAAAATCTTCTTAAAACAACAATAATTGGTCTGCATTGACCTTTTTTTCTTGTACTTTTAACTCTCCCAAAAGCAATTTCATACCGGCAAATTGCTTTTCTGTCACCTCTAAACAGCGTACAGAACCTTCTTCAGGCAAGTTCGCACACAACCTATTGTGGTATTTTTGCAACGAATCTCTACCTTTTACAATTCGGCTGTAAACGGATAATTGCAGCATTTGGTAACCATCTTTGAGCAAAAAATGTCGGAATTGGTTGGCCACTTTTCGCTTGGCTGCAGTGGTAACCGGCAAATCGAAAAAAACGATAATTCTCATAAATTTCGCCTCACTCATATTGATATGCCTTTAATGTTTGTAACTCAGGTAATTTCAAAAAACGAGCATTTTTTTGACTCAAGGCCGTCTGAAACGATGAAATCATTTTATCAATGGCTGCTAATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //