Array 1 44923-45987 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZAE010000022.1 Salmonella enterica isolate 1820_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44923 29 100.0 32 ............................. TACGCCGGATATATGGCAGCGGCAAGAAATAT 44984 29 100.0 32 ............................. TTAAACAATTCCCAACTCCTTCAGCTAATCTG 45045 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 45106 29 100.0 32 ............................. CTTTAGCGTTAGGGTTAGATTCTCCAGAAGTT 45167 29 100.0 32 ............................. TTTTTCAATCTTGGGAAACTTTACAAACGTTT 45228 29 100.0 32 ............................. GTCTTGAACTGCATAATCATTTTACCCGTTTC 45289 29 100.0 32 ............................. CTGGTTGTAATGTAATATTAAAAGTTAACAAA 45350 29 100.0 32 ............................. ATGATGATTATGATTTTGATTTAGCTGAATCA 45411 29 100.0 32 ............................. TTCTTTGGGCACGATACCGGATGGCGCGCCAA 45472 29 100.0 32 ............................. CGCTGGCGCGCCACTGCATCAGTACACGTAGT 45533 29 100.0 32 ............................. CCCACATTACGCGGGCTTTGTTGGGCATTATA 45594 29 100.0 32 ............................. CGCATTATGCGAACGGTCGTGAAAGAGGCCGC 45655 29 100.0 32 ............................. ATACTGCTTGTCCTGGATTTGCTGATCAATTC 45716 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 45777 29 100.0 32 ............................. TTTTTCAATCTTGGGAAACTTTACAAACGTTT 45838 29 100.0 32 ............................. TATACTCGTTGCCGATCAACGCATATTGATCA 45899 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 45960 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62546-64651 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZAE010000022.1 Salmonella enterica isolate 1820_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 62546 29 100.0 32 ............................. AGAACTTTGCGAATCAGGTAAATGCCCGATGG 62607 29 100.0 32 ............................. AGTGCAACGCTCTGAGTGCTGACGTGACCCGC 62668 29 100.0 32 ............................. TCTCATTAATTCAACTCCTTAACATGAGTTAA 62729 29 100.0 32 ............................. ATAGATTAGCAACAATACATATATTGAATAGA 62790 29 100.0 32 ............................. CACTCGATCATTAGTTACTAAAATATATAATA 62851 29 100.0 32 ............................. TACAATATCAACCTGTTAATGTACAAAACGAT 62912 29 100.0 32 ............................. TGATATATCGTATAAACTTACATCGTTATATT 62973 29 96.6 32 ............................T TCTGCAATTGTTTATTATATTAACGGTGGCGC 63034 29 100.0 32 ............................. ATAACAGTACCGGCTTCGTTACTTTTGCCAGT 63095 29 100.0 32 ............................. CATACGAAAAGAAATGGAATTATTATTTGAAT 63156 29 100.0 32 ............................. CTGCTTTAATGCGTAATATTGAATTTTTAGAT 63217 29 100.0 32 ............................. TAATTGAAAATGATATAGTATTATCATTAAAA 63278 29 100.0 32 ............................. TAACTCCGGCCCCGTATATACGGGGCTTTTTT 63339 29 100.0 32 ............................. TCGACTTAATAAAACCGGATATTAGCGCACAA 63400 29 100.0 32 ............................. CCTACTGTATATCTGTTCCGATGAGCCGGAAA 63461 29 100.0 32 ............................. AAACAGTATATAATGAGATTATGTCTCAATTA 63522 29 100.0 32 ............................. AATTACCAGAATATGATACATCTGGAAATTTA 63583 29 100.0 32 ............................. ATAGATTAGCAACAATACATATATTGAATAGA 63644 29 100.0 32 ............................. TAAATGTAGGTGATTTAGTAAAACCTTTAGCG 63705 29 100.0 32 ............................. GTACAAGGTGTAGATGTTTTTTTCATATAACC 63766 29 100.0 32 ............................. CCGTCCTCCTGGCGGTTTTTTATAGGGATTAA 63827 29 100.0 32 ............................. TGCCGGGGTTCAGCGGTCTCTATTTTCCTCGC 63888 29 100.0 32 ............................. AGGATTTAATATGATGCCACCGTTCCCATATT 63949 29 100.0 32 ............................. GTTAACATTTAAAAAAATCAATAATAGTTATT 64010 29 100.0 32 ............................. GCGAGGTGCTGGCCGCTGATGTGGATGATTGC 64071 29 96.6 32 .........................C... TTAATTTTTCTTTAGAGTTTTTTAATTTTTTA 64132 29 100.0 32 ............................. AAAACGGCCCCGGCCTGCCTGACTGAAGCGGA 64193 29 100.0 33 ............................. GATTACTCGATCCACACGCTGACGCTGGCGGAC 64255 29 100.0 32 ............................. CTCGGCGTCGAGATAGTCACCGACGTCAGCGC 64316 29 100.0 32 ............................. AGATCCGCCGGGAGTTTGCTGCACAGGCTGCT 64377 29 100.0 32 ............................. AATTTATTCGTCTTAAAAAACCACAGGATAGA 64438 29 100.0 32 ............................. TATAACTATGATTTGTTTTATATTTAACTATA 64499 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 64560 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 64622 29 86.2 0 TAA.........T................ | A [64646] ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGTGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //