Array 1 5320-6567 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDPB01000021.1 Salmonella enterica subsp. enterica serovar Havana strain 143 NODE_21_length_60425_cov_0.842648, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5320 29 100.0 32 ............................. CAACCACTCCGGGAGCGGCTGATCGTCAGTTA 5381 29 100.0 32 ............................. GAACGTTCAGCGGTGCGTTTACGACGCTGATA 5442 29 100.0 32 ............................. TTTAACGCCAAAGCGAATCGCCGCACAGAGGT 5503 29 100.0 32 ............................. GCAGCCTAGAGATTGGGCGCTCCACTAGTAAC 5564 29 100.0 32 ............................. AGGACAGTGCGCCGGGAACGTTAGAGGAATAT 5625 29 100.0 32 ............................. TGGTGCCTGTTGAGACTTTCACGTTTCCGTTG 5686 29 100.0 32 ............................. CAATCAGATACTTATCCCTCGGAGATATCTGG 5747 29 100.0 32 ............................. TCGGTTATCTGGGGAGCGGACGGTTATTAATT 5808 29 100.0 32 ............................. GGATTCAACCTTTTGGGTGATGTGCTGATGCT 5869 29 100.0 32 ............................. CGTGCAGGGGGTTAAATAAAGAACACGCTGAC 5930 29 100.0 32 ............................. CGATCGTGAATAATTTCACGCGCCGGCACAGT 5991 29 100.0 32 ............................. ATGGGCGTGGGGAGAGCGATTATTAATGAGGT 6052 29 100.0 32 ............................. GCGTGCCACGCAGGGGATCTATCAGTTCGACC 6113 29 100.0 32 ............................. CCACCGCCTGAACTCGCCTTGCTTCACCGCCT 6174 29 100.0 32 ............................. GCAAACACGCTCATAACTACGGCCAGAAATGC 6235 29 100.0 32 ............................. ATCACATCCTCCGAGCTTAGTGTCGCACTGGA 6296 29 100.0 32 ............................. GGAATATGAAAATTATTATTTTTGCAACTGCA 6357 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 6418 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 6479 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 6540 28 93.1 0 ............T..........-..... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 15597-17031 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDPB01000021.1 Salmonella enterica subsp. enterica serovar Havana strain 143 NODE_21_length_60425_cov_0.842648, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15597 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 15658 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 15719 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC 15780 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 15841 29 100.0 32 ............................. GCGTGGAGTAATGGGCGGCTAAAACTGCCGGA 15902 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 15963 29 100.0 32 ............................. GGACAAAGACAACGAGCGCATGGTGCATACGG 16024 29 100.0 32 ............................. AGGCTGGTGTAATTATCGCAGGGCATGGGCGG 16085 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC 16147 29 100.0 32 ............................. GTTGAATAATCCCCGCACATCATCCTGTAAAA 16208 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT 16269 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 16330 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 16391 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 16452 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 16513 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 16574 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 16635 29 100.0 32 ............................. CCTGGCACTCTAAAGCGGTGCGCCATACCCGG 16696 29 100.0 32 ............................. ATGTCTGGCAGATACTGAGTTTCCAGCTTGTT 16757 29 100.0 32 ............................. ATTGTTGCGCCACCAAAATTTTGAGCGCCACG 16818 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 16879 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 16941 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 17002 29 96.6 0 A............................ | A [17028] ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAAGGCGCTTGAGCTGGATATCAACGTGGATGGCGCCCAACTCTTTATTCTTGAAGATGTCACTGGAGCCGGAAAAACAGAGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAACACCTGGCTGGCGCTGTATCAGCCGGACTCCCGTCCCAGCCTGATTCTGGCGCATAGCGCGCGTCGCTTAATGGATCGTTTCAATCAGTCAATATGGTCGGTCACTCTTTCTGGTACGGAAGAACCCGATGAAGCGCAGCCTTATAGTCAGGGATGCTCCGCCTGGTTTGCCGACAGCAATAAAAAAGCGTTGTTGGCGGAGGTTGGCGTAGGCACGTTGGATCAGGCGATGATGGCGGTAATGCCATTTAAACATAACAACCTGCGGTTACTGGGTCTTAGCAACAAGATTTTACTGGCTGATGAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGTGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //