Array 1 13653-13484 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZN010000007.1 Nostoc sp. UCD122 NODE_7_length_44404_cov_6.3987_ID_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================================ ================== 13652 27 100.0 44 ........................... GGATTGAAACACGCCATCGCACTACTGCGATAAGCAACGCAACG 13581 27 100.0 44 ........................... GGATTGAAACACAGGTAGATAAAGCAATGATAAAACAATACTGG 13510 27 96.3 0 ........................T.. | ========== ====== ====== ====== =========================== ============================================ ================== 3 27 98.8 44 ATTGCAATTTATCAAAATCCCTATCAG # Left flank : TCTTTCATCATCTCTACCCTAAATTGGCGAAAACTTTATTGTTGGTTATCAGTACAGTAGTACGACAACAAATATTACAATTTATGAATCAGTTTACCGTAATATTTTAGATTCGTTTGCTGTCCAAAAGTTTTTTCTGTGTGGCTCTTGTCAGAGAAAAGCCGCCTGTATTGGCGAAGAAAAGCCACGGGATAAGCAATTTTCTGTACTGAGTTACTCTTTCTAGCTGGGTTCTCATATCTCAAATGCGCGGAAGGGTAGGTGTACAAATTCTAAAGTCCTCAAAAAGTGCTTCTATTCCAAATACAGCAAGGCTTTCAACCCATTAGTCAGCTAATCCTAATCCGCGCAATCTCTGAAATGCTTACCAAAAGACGATTTCAGCCTTTAAATTTTTTGGCACTCTTTCCAAACAAATTCTGTAATGCTATGATTGCTCTCGAATCGCGCAACTGTACCTTGAAAAGTAAATACAGCTTGGGTTTCAGGCTCCCGCTATT # Right flank : AGGTTGTTTGAAAAGTGGTTGACTGTGATTTTAGGCACTAACTGATCCCCCCTAGCCCCCCTTTTTAAGGGGGGAACCGAAATCAAAGTCCCCCTTTTTAAGGGGGATTTAGGGGGATCTAAAATGTTTTGTTACCGAGAAGAAAACTTTTCAAACATCCTCTTAGTAAAAGCTAGAAGTTGTGTAGGTTGGGTTGAGCAATAGCTCAACCCAACCTACTATTTTTCTTAACTGAATGATATTGATTTATAGTGCGATCGCTAATCTTTTCGATTGAGTGGGTGCTAGAAAGCATCGATTTGCAAAAGTCAATTTTCTAAAAATAAAAACACAGATGAACACTGATAATTTCTCTGTATCCATCTGTGATTATGTGGTGTCAATACCTGGGAATTAAACCATTAGACTTGTTGTATTTCTGGACGACCATCTTCAACCACAAATGAAGCCCGCTTACTAATCGTGCCAAATGGGGTTGTGACATTTGACATAACCAAATA # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTATCAAAATCCCTATCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.37%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 8039-8453 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZN010000128.1 Nostoc sp. UCD122 NODE_128_length_16322_cov_5.47461_ID_255, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ========================================== ================== 8039 38 100.0 36 ...................................... ATCAAATGCTGACCTGGGTAAAATCGCTTTATTGGC 8113 38 100.0 38 ...................................... TCTAGCAAAATACTCACAAGCAGCAGGACTAGAACCAG 8189 38 100.0 42 ...................................... ATATCTATACAAATTGATCTGATATAGCTAGGGACTGCCAGT 8269 38 97.4 36 A..................................... GTGGTTCTGGTGGTATATCAGGCTGTTCCCCCAGTG 8343 38 100.0 35 ...................................... CGGCGTTCAGCCTACAACAGATTTAATTGAGGAAG 8416 38 94.7 0 A....................................G | ========== ====== ====== ====== ====================================== ========================================== ================== 6 38 98.7 38 GGTTTCCGAAGCCTATTACCCCGCAAGGGGACTGAAAC # Left flank : TTTTATTTAATAATTTACGATCTGCCTGATAACAAAGCTGCAAATAAACGTCGTACTCGCCTACATAAAATGTTATCTGGTTACGGAAAATGGACGCAATACAGCGTTTTTGAGTGTTTTTTAACAGCAGTACAATTTGCTACGCTCCAAACCAAGATAGAAAAACTGGTTAAGCCTGAAGAGGATTCGGTTCGATTGTATATACTTGATGCAGGTGCAATTAAACGAACAATTACATACGGGTCTGAAATTCCTCGACAAGAGGAAACAATAGTCTTATGATTATGTAATCAGCTTGATGATTGGCAAGCCGAAGCGGGGTCAAAAACCCTGGGGATCTGCCAAAATCGCCAGAACCTTGACAAGTAAATAGTTACAGCGTTTCAGTAATCGAGAAAGTTGCAAATTAGTTGCAATAAGCCAGGCTGAAAATGACCTTTTTTTTCGATCTGCCAAAAGCATTCCCAGGAAGCTTGCTCCGTAACAGTTTCAGACCGAGC # Right flank : GATTGAATCATAAAGTCAAAGAGGATGGAAATTGCGTACAATATTGAGCATTATTTTAAAGCCATTAGTAATGCCAAGAGCAGCTACATCTACTAGTCGTAAACCAAAGCCAAAGCAAAAATCTGTTGCTTCTGTTGTGACATGGGCAGATGAAACAGAATTGGTGGGATTAGTGTTTGAACTGGAGTCAAGTGCTTCTGCTTTGCTTTATTCGCAGTACACGATTGGGCTGCACGCATGGCTTCTGGAGCAGGTAAGACAATTCGACCCAGACCTTTCAGCTTATCTTCATGATGGAGAGTCAGAAAAACCCTTTAATATTTCAGCGCTGTCGGGTCAACTAGTTGCTAGTGGCAAACAACTACGATTAGAAGCGAATCAAATTTACTACTGGCACGTGAACGCTTTATCTCAACGGGTAGCACAGTTTCTCAAACACTGGTTAACTCAACTACCAGAAAGGTTAGATTTAAAAGGTGCATCTCTAGAGATAAAACAGG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTCCGAAGCCTATTACCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 10640-9936 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZN010000128.1 Nostoc sp. UCD122 NODE_128_length_16322_cov_5.47461_ID_255, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 10639 37 100.0 42 ..................................... CCCTATCTACTTGTAGAGTTTTCCACAATCTTCCAAATGTCG 10560 37 100.0 35 ..................................... GAAATACTAAAAAGAGCTTTAAACGATGGATTGAT 10488 37 100.0 38 ..................................... CAATGGTGGGCACACAATGTTAGCGCTTCATGATGCGT 10413 37 100.0 36 ..................................... TGTTCAAGCAATCCAGCCTAAAGTTGCACGGAACAT 10340 37 100.0 35 ..................................... TTTAGGCGTTAGCCTCATTCCCTACCCATTAGGAA 10268 37 100.0 35 ..................................... ATTCACTAGCCTTTGCCATTTTAAAGCAGTAATTG 10196 37 100.0 35 ..................................... GGCTATTCTGAACAACCAGCAGAATGCGATCGCAG 10124 37 100.0 43 ..................................... CTTAACCAAGATTTGATCGAAAGTTCATTCAATCAATAAATAT 10044 37 100.0 35 ..................................... CCAGACAACTTTAATGAATGGGAATTTTTACAAGA 9972 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 10 37 100.0 37 GTTTCAGTCCCCGTGAGGGGATTTAGTCAATGGAAAC # Left flank : TAACAGCGCCGCAGTTCATGCTCTTTTGAGCCAATGTACTGTGAAAAATCTGGGTTAGTTTGGCGGTTGGAAGACCGTCATGCTTTCTGACCCTGGTAGCTGCCCGCTTCTGATGCTGCTGTCGCAAGACAGGATAGGTGCGCTCCCAGCAATAAGGAGTAAGGCTTTTAGCCATAATCGTTATTCATAACGGTGTGGATTACCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAACCCTCCAAATATTTTTTTGGCGTGTCAAAGCGGGGGCAAAATCCCTGGAGTCCCGCCAAAACTTTGAAACCCTTGTGATGTCTTAATTTCAGAGACTAGTGTGCCAATTGATTTAGTTTTTTGATGCGAGACGAAAGAAGCTTTTTAAGGGATATGCCAAATTTGTATCTGAAAAGCTTTATTTGCAAGGGGTCTAGACGGCAAGGTTTCAACCACCATTCCGGCTAGGGGTGGTGTACATTCGTAATCCACCACAG # Right flank : CGCTCGGTGCTGAAACTGTTACAGAGCAGGCTTCCTGGGAGGCTTTTTGGCAGATCGGAAAAAAAGGTCATTTTCAGCCGTCCTTATTGCAAATTATTTGCAGCTTCCTCAATTATTGAAACGCTGTAATTATTTAATTGTCTAGGTTCTGGCGATTTTGGCAGAACCCCCAGGTTTTTGACCCCGCTTCGATTTGCCAAACATCAATTTGATAACCCAATCATAAAACAATTACTTATCCTTGTCCACAAGCAAAGGTTTTCAACTATTATTTTCTTGTTTTAGGGATTTTCTGGCTAATTTCACGTAAGTTTTCACAGTCGAGATCGGCATCTCTAAATCTTCGGCGATTACCTTCAATGATTCCCCCATCTCCCGCCGCGCCAAAATCGTTGCCCAGGTAACAGCAATTTTATCTGTTCGCTCTCCTCCTGTCCGTTTGCGTTGTGCAGTAAATAATTTTATCAGTTCCTCAATTCGCTCTCCCAGCAGATTTGTTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCCGTGAGGGGATTTAGTCAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 5149-5330 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZN010000123.1 Nostoc sp. UCD122 NODE_123_length_16737_cov_6.14412_ID_245, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 5149 37 100.0 36 ..................................... CTGTACTACACTGAAATGAGTGTAGTAGAAATAGAA 5222 37 100.0 35 ..................................... GATAACGGCCCACGTTCCATTCTCAACGTTATAGT 5294 37 94.6 0 ...................................GG | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 98.2 36 GTTTCCATTAGTTCAACTTCCGAAGAAGTTTAAAGCT # Left flank : TGACAAAACCGCATTGCTCCCGGATATAACTACTGGGTGATTTTTTGTTTTGAGGTAAGGGCGATCGCCAACAGAGGGCAGTTACGCCATCGCACGAAAGTGAAGGGAGCAGTAGTTATGTGTGAAGTTACGGCAGTTGCATCAAGTGCCCAGCCGTGACTCTTCTGTGGATTCGCTGTTGCAAGGGTTGGGGATTTTGCTAAACCATATCTGTCATCTTTGCAGGCAAAGCTGGTGGCGGCTGTTGAAAGGGAGTACAAGCTTGCGTGGAGACAGCAAAAGTAAACTTGATTGTTAATGCAGCAATTAACTCGTTGTATGAAAGCGATCACTTCAATGAGCGAAAAACTTTATGCTATTCCAAAACAGAAAAAATGCTAAGATACTTCATTATTTTAAGCATCGAATTGTACCTACATAAATAAAATCATCCCTTCGTTTAGCAACACAAGAAAAAATAGATGCAATCGCAGCGTTGCAGAACGCTCGCTAGTTTTATG # Right flank : GCTGGCTTCTGAAAGCCTTACCTGAAGGTAATCCTACAGCAGATTTTCGGGGCTTGTCAAAATAATCCAAAATCAATAGCCTCAATTGAGAATTATGGGTCAGAGAAATAGCCTAAAACTCTTAATTAATAACGCTGCCGGGGCTGCCAACGAAATTATAGGGGTTTGGAGCTTTGGACTTCAGCCCCGAAACAATATCTGGAGTGGCAGTGCGTCTCGGTATAATTCTTTTTATGAACGTGGCTCTAGACCCTGAAACTTTAGTTTCAATTGATACTCCTAACCTCCTGCCTTCTGCCTCGTGCCCTCTGCCTTTTTGTAAGGAAAACTTGGTATAGCATGGCGGAAATCAACCACCCATTCCAAATCAATAAAACCCTTACGGTAGAGTAATTACGAATTATGAATTACGCCCTGCGGTACTAGTTAAAAATTCCTGTACCGACTAAGGGATCTGTCCTTCCCTGACAAATCCATGCTCCCCAATAAAAGGGATGCTG # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAGTTCAACTTCCGAAGAAGTTTAAAGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 6018-6427 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZN010000123.1 Nostoc sp. UCD122 NODE_123_length_16737_cov_6.14412_ID_245, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 6018 36 100.0 42 .................................... AAATTCCTTTGTTTTTGCGGTCTGTTCTCTTCCGATACAAAT 6096 36 100.0 36 .................................... ACGTGAAAAAAGTAATCTAAGTATGTTCCATGTACA 6168 36 100.0 40 .................................... GAGCGCCAGATCGCATCGCCTTGCAATGCTAACTGGAATG 6244 36 100.0 33 .................................... GTCAGCGATCGCTACGAACTTTACCCCACTCAA 6313 36 97.2 44 ............C....................... AATTCGATCTGTTGTAGTGTAAACGGTACAAATATCACATCTAA 6393 35 83.3 0 ............C..............-T.CT...T | ========== ====== ====== ====== ==================================== ============================================ ================== 6 36 96.8 39 GTCGCTTCTCTTAGGAGAAGTGGAATTAATGGAAAC # Left flank : GAAACAATATCTGGAGTGGCAGTGCGTCTCGGTATAATTCTTTTTATGAACGTGGCTCTAGACCCTGAAACTTTAGTTTCAATTGATACTCCTAACCTCCTGCCTTCTGCCTCGTGCCCTCTGCCTTTTTGTAAGGAAAACTTGGTATAGCATGGCGGAAATCAACCACCCATTCCAAATCAATAAAACCCTTACGGTAGAGTAATTACGAATTATGAATTACGCCCTGCGGTACTAGTTAAAAATTCCTGTACCGACTAAGGGATCTGTCCTTCCCTGACAAATCCATGCTCCCCAATAAAAGGGATGCTGAAACGGTGTGCCGAGGTTCAGGGAAAATAGCTGAAATGCTTATTTGAGCGTTGTGACCTTCGGTTGCTTACAGGGTAAGGGTTTGTGGTATGTTGGTGATTGGTGAAATGGCAGATTGGCGATTAATTTTTGTGGCCTTCGGAAACGGCTTCTGGATTCCTTACTGGATAAGGGTCTAAAATTGAGGG # Right flank : TAAAAAGGTCGGGATATTTACATCTCGACCTTTACAAGTATTTTTAAATAAATATATTTTTTATTTTTCACTGCTCATAAACTTTAAGAATCGCCTCACCAATTCCCTTAACCTTAGCTACCAATTCCTCTGGTTGTACTACTTTCACGTTGCCGCCAAAACCAACAATCCACCGTAAAAATTCCACGTCACCCAAATACCATATAGGCAATACCGCCTGAAAACGATTGGGAAACTGCTTATCTGTGGTTTTCTTCAGGCAGAAAATCGACTTAGGTAACATTAATTTGCCACCCTCTACAGGTGGAGACATCTTCATTTGTTTTGCAGGAAATCTCTTAGTTCCTTCCGTAATAAACCGGAAGATAAAATCATTAAACCACAGTTCTACTGTAATACAAACTTGGGAACGTTCTTGCTTATCGTTAGACAGAAACTTGCGCTGGTCATTTGCACTATACCCCAAAAAAATCCCGGCGCTAGCAGCAGAAAGTTTCTGT # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCTCTTAGGAGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 8881-8700 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZN010000123.1 Nostoc sp. UCD122 NODE_123_length_16737_cov_6.14412_ID_245, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 8880 35 100.0 40 ................................... CTCTTGCCACTCTTCGCAATTTACTTCTTTTGATACGCTG 8805 35 100.0 36 ................................... CACAAAAGACTTCCTGTGGTTCTATACTCCTGAAAA 8734 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 3 35 100.0 38 CCCTACCGATTGGGTTAAATCGGAATTAATGGAAA # Left flank : ATATAGTATTTAAGGTTTTGTGTAAGTTTGGAGTTATGTAGCATTAGGGGAATTACTGTGACATTTACATCTTCTCGGAAAAATCGAGAATGTAAATACCTTTTCATGCGAATGACGAAATATTTTTTGGATGTCTGAGCAAGATTTAATTGTGTAGCCTGTTAAGATATTGCATTTTTGTGAGATGATTTATGTCACGCAGAGGCACAGACACGGAGAGAAGATGAGGAGTTTTAGATTTTAATACATCAATTCCATCGCCTGTTTCTGCAAAACCACTGTTAATTATTGACTATCAACGGGAAATTTGAGACGTTCATCGACACCACTCACCAAATCGCCAAAACCCTATATTTTTCGTTGAGTGGTGTCGATTGCTTACTGGGTAAGGATTTGAGGTATGCGTGTTTTTAAATTTTACACAACATATATAATGTTTTTTAGAGTGGTGTCGATTTGGTGGCTGAAAGCCTTACGGGGCAAAGCCTCCTAAACGAACT # Right flank : AACAATCCGATTACTTACCCTTCTCTATTTCAGAAGCAAAACTAATTAAACCTTAATTAATACCGTCGTCATTCGCTTTAAAAGCCTAGACAACAAACAAATAACAGTTAAAAGTTAAAGTAGAAAAACTTTTAGTCTTGAACTCCTCATGATCTGTCACTTCCTCATCGGTATTCCCGGAAGTGGGAAAACCACATTCGCGGTCGAGTTAGCAAAATTGGGGAATTATCGTATTGTCTCCACTGATGCAATTCGCCAACAACTCTATGGCGATGCAAGTATCCAGGGTGAGTGGAGTCAGATAGAAGAAAAAGTAATTTCTGAGATTGTTGATGCGATCGCCGAAGGTAACTCGGTAATTTATGACGCTACCAATGCTAAACGTGCGTGGCGGATAGATTTACTCCTAAAACTCAAGTTATCTCTAACTTCGCCAGTCCTGTGGATGGCGTGGTACTTACAAACTCCTTTGGCGACTTGCAAGGTCTGGAATCAACAGC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGAATTAATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 1-232 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZN010001174.1 Nostoc sp. UCD122 NODE_2665_length_259_cov_0.598901_ID_5329, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1 30 100.0 37 .............................. ACTTTTATAAGCATTGCCTACAGGGAATTTTGATAAA 68 30 100.0 38 .............................. GCTTGTCTACCCTCTGTCCAACGGGGCATTGTGAAATA 136 30 90.0 37 ..............T..C.....C...... TTTAGTCTAGGCTCTGGCTACACGTCATTGTGACAAA 203 30 86.7 0 ..A..............C......CA.... | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 94.2 38 TCTCTGCACTGATCACCTAGGTGATGTAAC # Left flank : | # Right flank : TCTTGTCTAGGCTCTGCCTACAGGGGG # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTCTGCACTGATCACCTAGGTGATGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.30,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 5303-5507 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZN010000323.1 Nostoc sp. UCD122 NODE_327_length_8580_cov_5.26085_ID_653, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =================================== ================== 5303 25 100.0 35 ......................... CCCAGCATCTTACGGTAACGTTATTCCAGCCAGTC 5363 25 100.0 35 ......................... TATATCGTCTTACGGCAACGTTCGCCCAGCTAGCG 5423 25 96.0 35 .......T................. CACAGGGGAGTTTGGTGATGTCCGTCCAGCCAGCG 5483 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =================================== ================== 4 25 99.0 38 AAGACCCCTACGGCGACCCCGCAGA # Left flank : TTGGGTACAGGACAAAAAGTTGCACTTTTGGCGGGTGCTGCTGCACTTTACTATATGTACAACCAGCATAAGAATGCTCCCCAAGAAGGAGCGCAAGGTAAGTACTATCTTTCCAAAAACGGGCGTGTATACTACCGCGATGCTGAACATCGCGCTCACTGGGTTACTCCACCAGCAGAAGGAATTCGAGTACCAGAATCTGAAGCACAAAAATATCGGGAATTCCAAGGCTATAACCGGAGTGCCACAGGTCGCGATCTAACTGGTATAACTTCATCCGCAGCACCAGCACTCTAGATCGGCGAAGCGTGTGTAAATAAGAAAGCGGGTTTCCCAGAGGATAACGCCATCGCGCACGTCGGAAACACGAACTTAAATCAGGAGACAGATTATGGTAGATGAATTTTTCCGAAAGGCGAAGGAGTTGCTTTTGGGATCAAACAGCGATCAAGCTGAGAGAGATGCCGAATTCCGCGATCGCGATGTCCGTCCAGCCAGCG # Right flank : ATGAGGATTACCGTCGTTAACGCCAACGGCACAAATATTCTGGTGAGTTTGAAAAACCTCTCCCTGCCTTGAACTTTAGTTCAAGTCTGTCCCTCTCCGACTCGGAGAGGGACAGTTTTATGTAGTTATAGATCACAAAGACGCGATAAATCGCCGTCTTTTCCCTTAACCGAACCGTATTGCACTATATGAGCCATCGAACTCATGTTGGATTATGGATTATTTTTGTTAGCCAAAATTTCCTGCGATCGCTCAATATTTTGACGCACAGATTGAGCCGAAGTATGCAAACCCTTTCTTTCTTCATCGCTGAGTGTCAATTCCAATACACTCTCAATTCCACCGCATCCCAACCGACAAGGAACACCAATTACAACATCTTCTAAACCGTATTCACCTTGCAGATATGCTGCTACAGGCAACAACCGCGACTGATTTAATAAAATCGATTCTACCATTACGCTAGTAGCCGATGCTGGAGCAAAAAAAGCACCACCCGT # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAGACCCCTACGGCGACCCCGCAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 1552-2378 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZN010000424.1 Nostoc sp. UCD122 NODE_431_length_6766_cov_5.32187_ID_861, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1552 37 100.0 35 ..................................... GTTAAACTACCACCCCTTACTTAGTTGAAAATATA 1624 37 100.0 35 ..................................... TTGTTTATCCCTGATTGATGAGTGTAGCTCATCAA 1696 37 100.0 34 ..................................... TACAAATCACGAAACGTAGACATCATCAATAACA 1767 37 100.0 35 ..................................... ATGCAAAAAGGATATCCCCGTTATTAAAAACAAAA 1839 37 97.3 33 ....................................G TCTAAATTTACTACTCATTCTTTTACTTTTCCT 1909 37 100.0 35 ..................................... TTAGATTTATCTGCTGAAAAAGCTGATTTATTAAG 1981 37 100.0 34 ..................................... AGAGGATTTTTTGGTTAGTCATCCCCGTATAAAC 2052 37 100.0 36 ..................................... GAGAAATACATCTTCTTGGAGATTGCGTAATCGTAG 2125 37 100.0 35 ..................................... GTATTAATTCCTGATTGATGCGTGTAGCTCATCAA 2197 37 100.0 36 ..................................... ATTGAGTTATCTAATGACTGCATTGAAAACAATAGA 2270 37 100.0 35 ..................................... GCAGAAAAAACTAGGGTATCCTGCATCTAAATATG 2342 37 86.5 0 ....T......TT..C....................T | ========== ====== ====== ====== ===================================== ==================================== ================== 12 37 98.6 35 ATTGCAATTCAACAAAATCCCTATTAGGGATTGAAAC # Left flank : AGAAGGTGTGGTGCATTATGGCGTACCTAATATGCCAGGAGCAGTACCTTGGACAGCAACCCAGGCACTCAATAATAGTACATTACCTTATATCGTCCAGTTGGCGAATTTGGGAATTATGGCGCTAGAAGTTAACCCAGCCTTAGCGAAGGGTGTGAATGTGCAGAATCATCGCTTAGTGCATCCTGCTGTACAAGAGGTATTCCCTGATTTGGTAAATTAAGGTGTGTAAGGATTAGGCGATCGCTAATCAGACTAATTTTCTTGCCTTATGCGCGGATGGGTAGGTGTACAAAATGAGAAGGAGCAAAAAATGGCTACTGCTCCATCTATACAATGCTTTCAGGTCACTAGTAAATTTAAACCATCCGCGCACCTTATGGGGACTGGCTTTCAGCGATTTGCCTCTAGCCAAATCACAATTTATTGTGTTATCATTTCAGCATTCGCGCAACTGAACCTTGAAAACCAAATAAGACAAAGCTTTCAGAAGCCAGCCA # Right flank : TAATCGCCTCACTTTATCAATCGGCTATTGCAGATGTTAATGCTGCATTAAGGCAGTGGTAATATCAATTTTTTAAAGCATCACCAAACTACCTTCTGCTTCTTCTTCTAGTTCATAACCATTAGCCAGTTTTTCAATTGCTTGGTCAAGCATTGCCAAACCTTGATCTACCTTTTCAACTAAACTTAGTTGTCCTCGGAGTTCGGCAGCACCGACGAAACCTTTAGCATACCAAGTCATGTGCTTACGGGCTTGACGGACACCGCGATCGCCTTTATATTCCCACAAGGCTTGTAAATGATCTCTCGCACATTCCAAACGCTGAATCGGAGTAGGTGTCGGTAATATTTCCCCAGTTTTCAGGAAGTGATCGATTTCTCCAACCAAAAACGGATAACCCAAAGTCCCACGGGAACACATCACACCATCAGCACCAGTTTGTTCTAAACATTTCACCGCCGCTTCAACGGAAAAAATATCTCCATTCCCAATTACTGGGA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCAACAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 3093-2624 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZN010000433.1 Nostoc sp. UCD122 NODE_440_length_6602_cov_6.15985_ID_879, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3092 37 100.0 35 ..................................... TTATGTGTCCCCACTCCACTGGTGGCAAGTTTCGG 3020 37 100.0 34 ..................................... ACCAGAGCGATCGCTGAACATGGACGTACTATTC 2949 37 100.0 35 ..................................... ATAATTTGTCCGCTTGAAAGTACATATCCGTTTAC 2877 37 100.0 37 ..................................... CTATGGTTCCCCAACCGAACTTGGTATCATTTATATG 2803 37 100.0 34 ..................................... CAATTACTGAATGACCCTCCCTAACACATAATTC 2732 37 100.0 35 ..................................... TAATTAACCAAACCCTTGTAAATTAAGGAAAAAAG 2660 37 91.9 0 ....T....A......................A.... | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 98.8 35 ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : GACTCAGGCGGATTACAAGTTAAATCCAAGTCAAGTTGGGTTGCTGCGCCTCCCGTTCCCGGTTCTTTTGTCTGTAACATCGGCGATATGCTAGACAAGATGACGGGAGGTTTCTATCGTTCTACACCTCATCGTGTACAAAACCAGTCCCCAAATCATCGCCTTTCCTTCCCCTTCTTTTTCGATCCCAATTTCGATGTAGAAGTGAAGCCCATTGAATTAGATAATATAGTAGGGAATGATAATATAGGCGATCGCTGGGATAACGCTAACATTCATGATTTTCGCGGAACTTATGGTGATTATGTGTTGAATAAGGTGTCTAAGGTTTTTCCAGAATTGCGGCGAACTGTATTATAGGTTTTTAAGTCAGTTCTTCTTTGCTGAGTCACCTTTTCGTTAGGTTCCTGTATGTCAAATGCGCGGAAGGGTAGGTGTACAAATTCTACAGGCCCAAAAAAGTGCTTCTATCTCAACACCAGCAAGCACTTCACCAAAAG # Right flank : TAGCTGTTTCTACTTTTTGCAATATCTTACGTTCTATATTGAAACCCAAAAGTTGCTGGTAATACTGGGGAGAGAAACAAAAATGTATGAGTCAATGGGTTTATAATTGAAAACTGTGAATCAGCAAGAAGTTTGATCTAAGGAATACCTGGCTAAAATCTCCTTCCAAGGGGAGATGCCAAAGGCGAACGGTGACAACTCATAATTGGAGCGAAGCGACTGGTGAGCAGTTTATTACAAGGAGTTAACCTGTACTTAATTGGCATGATGGGTGTTGGTAAGACGACAGTAGGGCCCTTACTAGCAAAGCATCTAGGCTATGGGTTTTTGGATCTTGATGGTGTCATTGCCAAAGCAACAGATAAATCTATCAATCAGTTATTTGCAGAAGAAGGTGAAGCAGGGTTTCGCCAGATAGAAAGTGATGTACTTTCACAAGTTTGTGCTTTTACAAAATTGACTATAGCAACCGGTGGGGGCATTGTATTACGGCGAGAAAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 920-152 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZN010000481.1 Nostoc sp. UCD122 NODE_489_length_5872_cov_4.20483_ID_977, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 919 37 94.6 33 .....A...............A............... ATAGAAATCATCCCGCCATAAGTCCCTAGCATC 849 37 94.6 36 .....A...............A............... CATCCCAAGCCCTGCTATTTTAGGCTTTGTGATTAG 776 37 94.6 34 .....A...............A............... AAGCTATATACCAATAATCACTTACACCCTGATT 705 37 94.6 40 .....A...............A............... TCTTTTTGCTTGTAACCCCATGCCACGAATGAAGCCCAAG 628 37 100.0 33 ..................................... TCTGAGAGTCTATCAGTTCGTCTGTCATTACTT 558 37 100.0 38 ..................................... TTGAATAAACTCAATTTTGCTCATGAATCCAGCCTCAA 483 37 100.0 35 ..................................... CAAGCAATTAACCCCAGAAGAAGCAGAAATTACGC 411 37 100.0 37 ..................................... GCGTTGACTCCCAACACTCCCACCCATGATGCATCTG 337 37 100.0 39 ..................................... ACCTCAATAAAACCTCTTTCTGCTTGCTCTGTGAAATCA 261 37 97.3 36 ................................A.... GCAGATGGGTAGGCGATACAAGCTAGTGAACATACA 188 37 94.6 0 ...............................T....A | ========== ====== ====== ====== ===================================== ======================================== ================== 11 37 97.3 36 GTCTCCACTAACTATGTGGAGGCGAATTAATGGAAAC # Left flank : ACACCCTTTGCACCATAATTTTTGTACATGTCGCTTCTCTTAGGAGAAGTGGAATTAATGGAAACGTCTCAACGTGTACACGCTCGTCGTCGTTAATCCAACTGTCGCTTCTCTTAGGAGAAGTGGAATTAATGGAAACGTATTTTATGATTCCTAACGTCCTCTATAAGGACATTTAAGTCGCTTCTCTTCGGAGAATTGGAATTAATGGAAAGAATCAAGTTCCATCGCCTATTTGACCGTAAGAAAATCCGCGAACCCCTAGCTGTTTTTTTAAAGATGCTAATTTTCGAGCCTCAAACCCCTACTGCGATTATTCTTGAGCGATTACAAACCCAAAGGAGGTTCGCGCAAGACCTGAAAAGCTGATGCAAGTGATGTTTAAAGCATTTTTGTTCAAAAGGAAACTTGACAGGCAATGGCTGAAACAGTACTTTTGGATCAGGTTCACGAAAATGAGCGCTGTAAGCCCTTTATTTTCTGGCTTCTAGCCCCCAGTT # Right flank : AGAATCAGAAATTTGGTGGCGCGATGGGAAATAGATTTAGTTCACGCCATCTTTATTCCAATTAATCAAAAAAATAAGCTAAATAATTAAATTAAAACCCATCTTCACCTACTCCGATTTATTCCTCTTTTTGAACCAGCAATTTCCCAGAC # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTAACTATGTGGAGGCGAATTAATGGAAAC # Alternate repeat : GTCTCAACTAACTATGTGGAGACGAATTAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 1611-1205 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZN010000481.1 Nostoc sp. UCD122 NODE_489_length_5872_cov_4.20483_ID_977, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1610 36 100.0 37 .................................... TGCCTTTTTCAATAAATTCAGGTTCATATAATTTATT 1537 36 100.0 34 .................................... CCTACCCTCAAATAACCAACCAAACAATCCTTTA 1467 36 100.0 41 .................................... TCGCAAAGCCTAACACCCTTTGCACCATAATTTTTGTACAT 1390 36 100.0 38 .................................... GTCTCAACGTGTACACGCTCGTCGTCGTTAATCCAACT 1316 36 100.0 40 .................................... GTATTTTATGATTCCTAACGTCCTCTATAAGGACATTTAA 1240 36 91.7 0 ............C......T...............G | ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 98.6 38 GTCGCTTCTCTTAGGAGAAGTGGAATTAATGGAAAC # Left flank : CGATGCTGTAGTATTTGCGATCGCAGTTCCACGTTCACGTCATCAAGAGTTTAAGCATGAAAAGGTTGAGCCAATTGCCGGAATTCGGTTCATTCTCCAGCAGGGTCAACTAATACCATTTCACAAAAAGTATGATACGGATAGTCAAGGAATAAATGAAAGAGCAAAATGAACTCATCAATAAAACCCTTATGGTACAGTAATTACGAATTATGAATTACGCGCTGTGGTACTAGTTAAAAATTCCTGTACCGACTAAGGGATCTGCCCTTCCCTGACAAAAATCCATGCTTCCCAATAAAACGGATGCTGAAGCGGTGTGTCGAGGTTCAGGGAAAATGGCTGAAATGCTTATTTGAGCGTTGTGACCTTCGGTTGCTTACAGAGTAAGGGTTTGGGGTATGTTGGTGATTGGTGGAATGGCAGTTTGGCGATTAATTTTTGTGACCTTCGGAAACGGCTTCTGGATTCCTTACTGGGTAAGGGTCTAAAATTGAAGG # Right flank : AATCAAGTTCCATCGCCTATTTGACCGTAAGAAAATCCGCGAACCCCTAGCTGTTTTTTTAAAGATGCTAATTTTCGAGCCTCAAACCCCTACTGCGATTATTCTTGAGCGATTACAAACCCAAAGGAGGTTCGCGCAAGACCTGAAAAGCTGATGCAAGTGATGTTTAAAGCATTTTTGTTCAAAAGGAAACTTGACAGGCAATGGCTGAAACAGTACTTTTGGATCAGGTTCACGAAAATGAGCGCTGTAAGCCCTTTATTTTCTGGCTTCTAGCCCCCAGTTGTCTCAACTAACTATGTGGAGACGAATTAATGGAAACATAGAAATCATCCCGCCATAAGTCCCTAGCATCGTCTCAACTAACTATGTGGAGACGAATTAATGGAAACCATCCCAAGCCCTGCTATTTTAGGCTTTGTGATTAGGTCTCAACTAACTATGTGGAGACGAATTAATGGAAACAAGCTATATACCAATAATCACTTACACCCTGATTG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCTCTTAGGAGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 2508-2330 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZN010000481.1 Nostoc sp. UCD122 NODE_489_length_5872_cov_4.20483_ID_977, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 2507 36 100.0 35 .................................... CGAATTATTGCCAATTAAATGATTCCCGATCGTAT 2436 36 97.2 35 ..A................................. ATACGTAGCATCACCATCTGTCAGCCCAGTATCCA 2365 36 94.4 0 .......G.......................T.... | ========== ====== ====== ====== ==================================== =================================== ================== 3 36 97.2 36 GTCTCCACTAACTATGTGGAGGCGAATTAATGGAAA # Left flank : AGACGAATTAATGGAAACATCTTCCCAGGTATGAGTTTATAGAACTTGATAAAGTCTCAACTAACTATGTGGGGATGAATTAATGAAAATCAAGTGAATCTATTGGGGTTTATCGTGGTTCTAACAATGGTCTCAACTAACGATGTGGAGACGAATTAATGGAAACTCTTGCTCGTCAACCCAACGCGCGATCGCATTCAGATCGCTTCTCCAATGAGAAGTGGAATTAATGGAAACTTACAAGGAATCGAAGATCAGATGGCCGATCCTCAGTAGCTTCTCTTTGTAGAAGTGGAATTAATGGAAACTTAGCTAATTTCTGCATATCTTTCCAGATGCAATTGATAACAGTAGGTCGCTTCTCTTCGGAGAAGTGGAATTAATGGAAAATGAACCAACGAAATAGGAGTACGGACTAATATTCTCTTGTCGCTTCTCTTCGGAGAAGTGGAATTAATGGAAACTATGTAGCATCACCGTCAGTTAGTCCCGTGTCAATA # Right flank : AGAATAAGAAATTTGGTGGCGACGGAAGATAGATTTAGTTCACGCCATATTGATTCCAATTAATTAAAAAATAAGCTAAATAATTAAATTAAAATCTATCTTCACCTACTTCGATTTATTCCCCTTTTTGAACCAATAATTTCCCAGATACCCCAGCCGTAAAACCCAACCAAATCGCCGCTACAGTAACGCTGGGCTTGATAAATAACGTCGCAATTCCGATGCTGTAGTATTTGCGATCGCAGTTCCACGTTCACGTCATCAAGAGTTTAAGCATGAAAAGGTTGAGCCAATTGCCGGAATTCGGTTCATTCTCCAGCAGGGTCAACTAATACCATTTCACAAAAAGTATGATACGGATAGTCAAGGAATAAATGAAAGAGCAAAATGAACTCATCAATAAAACCCTTATGGTACAGTAATTACGAATTATGAATTACGCGCTGTGGTACTAGTTAAAAATTCCTGTACCGACTAAGGGATCTGCCCTTCCCTGACAA # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTAACTATGTGGAGGCGAATTAATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 4462-4272 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZN010000481.1 Nostoc sp. UCD122 NODE_489_length_5872_cov_4.20483_ID_977, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 4461 37 100.0 43 ..................................... TGCATAACAGACAACCCTAACCTCATCCCATTGCAGAGATAAA 4381 37 97.3 36 ................................A.... TCTTTCTCAAGCCTTGCCATGTAATAGCAAGCACGA 4308 37 97.3 0 ...............G..................... | ========== ====== ====== ====== ===================================== =========================================== ================== 3 37 98.2 40 GTCTCCACTAACTATATGGAGGCGAATTAATGGAAAC # Left flank : GCCGTCTAAAGTTTCCTTGTGGTCGCTTCTCCAATCAGAAGTGGAATTAATGGAAACGAATCACACCCTTGAATGATTAGAAGCTCTTATTGAGTCGCTTCTCCAATCAGAAGTGGAATTAGTGGAAACGTAATACAATCTTGTATGTAAGCTAATGCTTCACTCGTCGCTTCTCTTCGGAGAAGTGGAATTAATGTAAACAATGTAGTCCCATCTCCTATCTGACCATAGCTATATAACCGTAGGAAAATCCGCGAACCCATAGCTGTTTTTTCAAAGGGGCCAATTTTCGAGGCTCAAACGCTTACTGCAACTATTCTTGAGCGATTACAAACCCAAAGGAGGTTCGCGTAAAACCTGAAAAGCTTATACTGACGATGTTTGAGCCATCTTTATTGAAAGGGAAACTTGACAGGCAATGGCTGAAACAGTACTTTTAGATCAGGTTCACGAAAATGGTCGCTGTAAGCCCTTTATTTTCTGGCTTCTAGCCCCCAACT # Right flank : CAGCATTGGCGATCGCACTGGTAGCAGATCATCTTACACCGACTAAAGGATCTGTCCTTCCCTGACAAATCCATGCTCCCCAATAAAACGGATGCTGAAGCGGTGTGCCGAGGTTCAGATACTGTTGGCGAAAGTGTTACAAACGCACGGACAAAAGTGTTACAACTCAAAGCCGCAACTACAGATTGAAGGTTTGAGCTTACGTAATACTTAATAAGACAATAATGTATTACATTCGCCAACAGTATCAGGTTCAGGGAAAATGGCTGAAATGCTTATTTGAGCGTTGTGACCTTCGGTTGCTTACAGGGTAAGGGTTTGGGGTATGTTGGTGATTGGTGGAATGGCAGTTTGGCGATTAATTTTTGTGACCTTCGGAAACGGCTTCTGGATTCCTTACTGGGTAAGGGTCTAAAATTGAAGGGTCGCTTCTCTTTGTAGAAGTGAAATTAATGGAAACAGCTGTGTTTCAGATTGTGGATCAGCAAGTTGTTGTCGCT # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTAACTATATGGAGGCGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 5 5302-5730 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZN010000481.1 Nostoc sp. UCD122 NODE_489_length_5872_cov_4.20483_ID_977, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 5302 37 97.3 44 ......................G.............. TTGCTAGAAGAGAATACAACATTCGTCTTCTCCCACGGGATGAA 5383 37 100.0 48 ..................................... TCACTGCTTGGATGTCTAGACTAGCCAATTTAGACTTAACTTGATCGA 5468 37 100.0 42 ..................................... ACCCTGTGAAACAGGAGCAGGTAAAACCAGCATGATGCTTGG 5547 37 100.0 38 ..................................... TTATTTAAAGAAGTAATCTTATCAAGGAAGTAAAGTAT 5622 37 100.0 35 ..................................... ATAAGCTACCCAGAAACAGCAGAAGAAATTTTTAA 5694 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ================================================ ================== 6 37 99.1 42 GTTTCCATTAATTCCACTTCTCATTGGAGAAGCGACT # Left flank : AAGCATTAGCTTACATACAAGATTGTATTACGTTTCCACTAATTCCACTTCTGATTGGAGAAGCGACTCAATAAGAGCTTCTAATCATTCAAGGGTGTGATTCGTTTCCATTAATTCCACTTCTGATTGGAGAAGCGACCACAAGGAAACTTTAGACGGCCACTTTATCCTTTAAGTTACAGTTTATGAAGCATAAAGCGGCAATAACTGCCATTTTATGTTTCAAGTCACACTAATAAAGCCAAAATATGGTTTTTGTTAAACCTTGTCAGATTGCAGAATGTTTCTATTAATTAGCCTCCACATAATTAGTGGAGACTATTGACACGGGACTAACTGACGGTGATGCTACATAGTTTCCATTAATTCGCCTCCACATAATTAGTGGAGACATGATTTGTGCTTTTCAGTTTGTTGAGCAAGTCGATAAGTTTCCATTAATTCGCCTCCACATAGTTATTGAAAACAGTACCAGCCGACGTTCAGACTGCGGTTGACAA # Right flank : CCTCTTATTTAAACCCTTATGGTGCTTGATGTCCAGATGCCATTTGCGGCGGGGTATAGCTCTACAGCCAAATTCAACCATATTACACAGATATAAAAGCCCTGAAACCCTTAAACAGTAGGACATCGGCGGGGTCTACAAG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTCCACTTCTCATTGGAGAAGCGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //