Array 1 329927-328677 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGUV01000003.1 Pseudomonas oleovorans strain NCTC10692, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 329926 29 100.0 32 ............................. CATCCAAGTTACGCATCAGATTCGAGACGCGA 329865 29 100.0 32 ............................. CTATGCAGGGCTGGTGCGATTTCCTTCTTCCA 329804 29 100.0 32 ............................. GTCGCCTTCCTTGAGTGGCTTTTTTGAGCCGA 329743 29 100.0 33 ............................. CGAACGGGCGTCTCAGCGAGATGGTCGCTTGGC 329681 29 100.0 32 ............................. GTTTGTGGCGATCTTCTCAGCTCCCATCATTT 329620 29 100.0 32 ............................. CCCGATCCACCTTACGAAAAGCCTCTGGATGA 329559 29 100.0 32 ............................. TCAGCTTCTCAAAATTAAGGGATATAGGGACC 329498 29 96.6 32 T............................ ACGTTGCCATGAAATCCTTCTCGGTACGTGTG 329437 29 100.0 32 ............................. GCGAAGTAGGCGATCAGCAGTGCGACGATGCC 329376 29 100.0 33 ............................. TACATGCGCAAGGGCAAGTGCCCGGCCTGCGGC 329314 29 100.0 32 ............................. CATGTTTGCGAACTGAACAGCATGCGGTGCCA 329253 29 100.0 32 ............................. GCATACGATGAGAGCGGTGGCGCTGTTTTCGG 329192 29 100.0 32 ............................. ATGCTGTCCAACGACTACGGCAGCGTGTTTAC 329131 29 96.6 93 .......................A..... CTTATATATCCAGGGAGAAAATCAGGGTTCTGGTGTTGTCCACCTGCGTGGAGGTATTCGGTAGCTGCGCCCGTCATCGCCGTTGATGAACCC 329009 28 75.9 32 ..G..C......C-..TA.....A..... TCCTGTAGCGCACGTTGCGAAACCGCAGCAAC 328949 29 79.3 32 .....C..T...CAA..........A... TATTTTGGGGATTTGAAGGGGTATTGACGGTT 328888 29 100.0 32 ............................. GGCTGTGGGGGTGAGAAATGAGCAAGCGCGAA 328827 29 100.0 32 ............................. CCCATGGATCGAGCATGAGAAACTGCTCGTTC 328766 29 79.3 32 .......T....CTT.....A....A... GGTGTATGAACTGTATTTACGTAACCACGCAG 328705 29 72.4 0 ..G..C......A.TC..A..T......T | ========== ====== ====== ====== ============================= ============================================================================================= ================== 20 29 95.0 35 GTATTTCCCGCGTGCGCGGGGGTGAGCGG # Left flank : GGGTGCTGCATCGCAAAACTGGATGCAGACAAGCCGGATCAACACTGCCGAAGCAGCACGGCACCGTAGCGAAGGATTCTTGCTATTGCGGGCAGCGAAACCCAACCCAGCTGGAGGGCCATTCAAGAACTCGCTGTACCACTACCCGTTGGTCTGGGCCACGCTCACTGCATATTGCGTTGGCGATCAGGCCAGGATTGCTGACCTTCTTTCTCAATGTCGGCAGATCGGAGGTCGGCGCGGCGTAGGATGCGGTCGGGTAGCCGGATTCTCGGTGGAAGTCGTTCCAGAAGTCGAATGTACCTGGGCCTTGCGGGCAATGCCGGATGACAGCGAACAAAGCATCCTCTGCGGAGAGTATGCACTCGCAATGTCGGCTCTCCAGAGTCCATATTGGGATCGCAGTCTGCACAAGCCGGCGCTTGTGCCCACCAGTTTGGCTTAACCTTGCAAGTTACCAGATGTAGTGTTCGCACTATGCGGAAGATCAATATCTATGT # Right flank : ATCAAGCTGGTCATGCTTCCCCCTGAGAGTACGCTGGATAAACGGTGCCAACCCTACCACTGGGCTGGCTTGCGCCCTGGACTAACGGAAGGTGAGCGCTACCGAGTAGGTCTAGTGCTGGGCGCTCAATGGCGCTCCCTGGCCAAGACTGGGCTCACCCTGAGTGCAGTAGAGGTTCAGGTCCTGGGTATGGCCGTGCTGGCAAACTGGCAAGGTGATGAGGACGAGTTGGAAGCCTAAAGCTCTGCTGCATTCCAGTTCTGGGGCCTTGGGAATTGCAAATGAGCCAGGATTACACACTCCAGCTTGAGCGATCATGAGCATCAGATTCCACTCCCAACCTCCCTCAAGGAGAGCCTATGAAGCAACTTCGAATCTGGCTGATCAAGCGCAAGCTGCGTGCTGCATACCTTTCGTACCGCAACATGCTCGACCGCTCCCATGCTGGCCGGCACATGACCGTACAGCTGCCCAGCGTTGCCGCCCAAAAAGAGCGTTGC # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCGTGCGCGGGGGTGAGCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [28-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 836617-834580 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGUV01000002.1 Pseudomonas oleovorans strain NCTC10692, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 836616 29 100.0 32 ............................. GCAAGCCAGAAGCCCCGGATTTACTGACCTTG 836555 29 100.0 32 ............................. GTTTATGCGCGTGCGCGCGCGTGTGCGAAAAA 836494 29 100.0 32 ............................. TTCAGCCTGTTCATCGAGACGCTGGGGGTGGA 836433 29 100.0 32 ............................. GCTTCGTCGCGGTCAGCCTCGACCACCTTTAC 836372 29 96.6 27 ............................C CTGTCGCCCGCCTCGCCCGCCCTGGGC 836316 29 100.0 32 ............................. TGAGCTTCGCCCGTTGCGCCAAGGCCATCGAC 836255 29 100.0 32 ............................. CTGTGCGGCTGGAACGTGGAGGCGTGGGATCA 836194 29 100.0 32 ............................. GGACTCGCCTTCAGATCATGATCGAAGAGACC 836133 29 100.0 32 ............................. TCATAGGATGGGCACCAGTAACTGGCGTTAGC 836072 29 100.0 32 ............................. TGGATAGGCTGAGCGGCGATATTCTCCCTGTA 836011 29 100.0 32 ............................. TAATCAAAGACATTGCCAGCCCGTACTACGGC 835950 29 100.0 32 ............................. GCATCAACGATGGCCTTGTCGATGTTGGCTTC 835889 29 100.0 32 ............................. GCTGTTGCTGCCGGGCAGGCGCGGGTGAACGA 835828 29 100.0 32 ............................. GGGCGCCACGCTTCTGCATCGGGCGATCCTTG 835767 29 100.0 32 ............................. CTGCTGGTTGCCGGCGCCGGGCCGGATTACGC 835706 29 100.0 32 ............................. AACTGAATCGCTGGACTTCCCGGCTCCAATTC 835645 29 100.0 32 ............................. TATCTGGAGATTGCCCAGAGACAACTGCAAAT 835584 29 100.0 32 ............................. GCATCTTCGTTACCCTGTACCTGCCGATATGC 835523 29 100.0 32 ............................. ACGCCGATAGCACAGCACAGGCCGCGCCAGAT 835462 29 100.0 32 ............................. GCCATCGCGCTTCATACAAACTTGGTGGAAAA 835401 29 100.0 32 ............................. GGTGATTTATGAGTGAGTGGATTAGCGTAGAA 835340 29 100.0 32 ............................. CACATGCTCGACAGCGCCCTGATCATCCCAAC 835279 29 100.0 32 ............................. GACGGTCACGCAATCATGCACTCAGATGACGC 835218 29 100.0 32 ............................. GTCAATGCCCGCGTGCTGGTGGACTGGTGGCG 835157 29 100.0 32 ............................. CGCTTCCTGCTGGTCGCCCGCCACGTCGAGAA 835096 29 100.0 32 ............................. AACTCCCGGACAGTGCGCGGGAGTGTCATTGC 835035 29 100.0 32 ............................. CCTTCGTGTATCTCACGCTGTCTTTCTTCGGC 834974 29 100.0 32 ............................. ACGGCTGCCGGCTTCAGCGGCAAAAACATTGA 834913 29 100.0 32 ............................. TCGGGCCTGCAGGAGTAGACGCAGGTGGAGCA 834852 29 96.6 32 ....A........................ GGCGACGTTCCCACCATAGGCCATGGCTCGAC 834791 29 100.0 32 ............................. CTGGTGTGCAATAGTCGGCCACATCAGATGTG 834730 29 100.0 32 ............................. GCGTTGGCCGATGTGCAGGCCGCCGCGTCGAG 834669 29 100.0 32 ............................. CCCCCAAACCCGACCAGGAAGAGAAGAAGGTC 834608 29 89.7 0 .........................G.TT | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GCGAAGATCATCCCCACCATCGAAGAGGTGCTGTCCGCAGGTGGTATCTCGCCACCCGAGGCACCGCCGGAGTCCGTACCACCAGCTATCCCCAACCCGGAAAGTATCGGCGATGCCGGGCACAGGGCGCAGTAATGAGCTTTCTGGTCGTGGTCACCGAGAACGTACCGCCGCGCTTGCGCGGACGCATGGCTATCTGGCTGCTGGAGGTGCGTGCCGGCGTCTATATCGGTGATGTCTCCAAGCGCACCCGCGAAATGATCTGGGAACAACTGAGCCGGGGGCATGAAGATGGCAGCGTTGTTATGGCCTGGGCGAGCAACCACGAGTCGGGTTACGAGTTCCAGACGCTAGGCCCGAACCGTCGTTTGCCGGTGGACTTTGATGGCTTGAATCTGGTCGCCTTTCAGCCCTTGGAAAACCCTGATCTTTAACAAGGAAAAGTTGGTAGATTTTTAGCGGCTAATTTTCCCCTCTGGGGACAATTGGTTACGCTAAGA # Right flank : GGAGGGGGGTGCTCGGCACGCTGTTTTTTAGCCGGGCAGGCGAGTAATCTTGCCGCCGATGGTTCTGCGTGCACGTACATGACGCGGATGAAAAGGGAATAGGGTGCGGCGAATCTCGCCAACGCCCTGGCTGCCCCCGCAACTGTAAGCGGCGAACGATGCCCTCATGCCACTGACTCCGGTCGGGAAGGCGGGCGAAGTGCCAAGCCGTGAGCCAGGAGACCTGCCATCGATAACGGGCGTTTCGCCCATCCTTCATCCGAATCGTCGCGCGGTGGGCGCGGCAAAGGAACTCGCATGCATATCGAACCCGGTGTCGTCGAAGGCGCCAAGATCCTGCTCAGCTACGCAACGGCCGTCACCGCTTTCGGCCTGACCGCCAAACTCGCCCTGGACAGCGTCCGCAACAACGGCGGTGTCGCCGCCCTGGCGCTGCGCAGCCTGCTGACCACCGCGCTGGTGTTCTGCTTCTTCGAGGTGTTTCCGCATCATGCGGTGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 848856-847728 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGUV01000002.1 Pseudomonas oleovorans strain NCTC10692, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 848855 29 100.0 32 ............................. TATCTGTTCAACGGCACCATTGATTGGCTGTT 848794 29 100.0 32 ............................. CTGCTGGCACGCCCCGGCTACTTTGAGCCGAT 848733 29 100.0 32 ............................. CTCGTGAAGGCGGCGCAAAAGGCGATGGCGAA 848672 29 100.0 32 ............................. TGCGAATAGCGCATGGTCATCTTGATATCGCC 848611 29 100.0 32 ............................. GTCGCGCGGTTGCTGACCCTGGCCGGCGAGGC 848550 29 100.0 32 ............................. CCCCGAATATGACGCAGCACATTCAAACTTGC 848489 29 100.0 32 ............................. TCCGGCTCAGCCTTGTTCAGCGCGCGCTTGCC 848428 29 100.0 33 ............................. GTGAACTGCTCCAGGCTGGCATCAACACCGGTC 848366 29 100.0 32 ............................. CGCATCGAGAATATTTGCATTCTGACAAAACC 848305 29 100.0 32 ............................. AGTGCGCATTGGCTTGGGCGTGAGTGTGGAAA 848244 29 100.0 32 ............................. CCCGCAGCAGCTCAACACCTGGCGCGAGCAAA 848183 29 100.0 32 ............................. CTGGCAGTCAGCATCGTGCTGGGCCATCACCG 848122 29 100.0 32 ............................. TCGGTGAACTTGGCGAGATGCTGGTCAAAGAA 848061 29 100.0 32 ............................. CGTTGTAACTAATCCATCAGGCCCGGTTACAA 848000 29 100.0 32 ............................. ATCATGATTAACCCCTTACCACTGGCCGAGCG 847939 29 100.0 32 ............................. CAGATTGATGCGCGGGAGGCGCTGGCAAAGGT 847878 29 96.6 32 .................A........... CGCATGGAGACGTTGGTTTTGCCGAACTGGAA 847817 29 100.0 32 ............................. TTCTGCATTTCCTCTTCGTTGCCTTCGCGCTC 847756 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GGAAACCATCATGCCGCGCCTGTACCGCGAAGCGCCGGTCAACTCGATCTGGGAAGGCTCGGGCAACGTGCAATGCCTGGACGTGCTACGCGCGCTGTCCAAGGAACCTGGCGTGCTCGACGCGTTGTTCGCCGAACTGGGCGATGGTCACGGCGATGCCCGCCTGAAGGCGCATATCCAGCGCCTCAAGGCAGATTTCGCTGATACAGCCGACATCCAGTACCGCGCGCGCCGGCTCACCGAAGACATGGCCGTAGCCCTGCAGGCGAAGCTGCTGCTGGAGGCGGGCAACGCCACTGTCTCCGATGCCTTTATCGCCAGCCGGCTGGAAGGCCGTGGCCGCGTCTACGGCACCCTGCCGCGCGGTGTCGACGTCGAGGCGCTGCTGGCGCGTAGCACGCCGAATCTGCTTTGATACAGGGGCAATCTTTAACAAGGAGAAGTTGGTAGGTTTTTAGCGGCTGATTTTCTCCTTTAAGGAACAATTGGTTAGGCTAAGT # Right flank : GCTCAAGCCAAGACGCACGAATCCTTAGGAGCGAGCTCTGCTCGCGAAGCTTCTGACTCATCCAGATTCACGAGCAGAGCTCGCTCCTACAGGTCAGGCAGTCAGGCATATTCACCGCGGCGCACTGGTCTCCCCCTGCGCTGTTGTCAGTCCAGAACGATGCTGGCACTTTGTTGGGCCAGTAACGATGCGATGCAAGGAGTGCCAGATGAAAGGATTCGCCGATCTCAGCGAGCAGGCCCGTCGTCTTTGGGCCAAGAGTGACGATGGCTTCGGTCATGGTGTGCTGGCGCATTTGCTGGATGTGGCGGCGGTGGCCGAGCGGATGCTGGCCCATGAGCCTCCGAGTACGCTGGATTGGGCCGCTCAAGCGCTGGGGTTGGAGCGCGAGCATGTCGCCCGCTGGGTTGCCTGCCTGGTGGGCCTGCATGACTTCGGCAAGGCCATCCCCGGCTTTCAGGACAAGTGGCTCGCTGGGCGGCAGGCTGATGAGGCGCTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1606301-1606750 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGUV01000002.1 Pseudomonas oleovorans strain NCTC10692, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1606301 28 92.9 33 .C..........A............... AGTTCCAACCAGGCTTCGACGAGCCTACGACAC 1606361 28 96.4 33 ............A............... TGACCAACTCCGTCATCAAAGGCGAACAGCATC 1606421 28 96.4 33 ............A............... ACGTCCCACGCTTTCATCACCAGCTGGGTTTTC 1606482 28 100.0 32 ............................ TGGTCGAATCCGCCCAGCTCTACGCCCCGCCC 1606542 28 100.0 32 ............................ TTCATGTGCGCGGCGCGTGGCTTGATCTTCTC 1606602 28 100.0 33 ............................ GATCACGGCCAAACGCCCGTCGGCCACCATCAA 1606663 28 96.4 32 ...........T................ TGCACGCAGAGGCCGAGTCGCTGCGGACTGAG 1606723 28 75.0 0 ...........TA........C.GCC.C | ========== ====== ====== ====== ============================ ================================= ================== 8 28 94.6 33 CTTCACTGCCGAGTAGGCAGCTCAGAAA # Left flank : GTAAGCGGCCAACGCCGACAGCAGCAGGTGACTCAGCCAGAACGACACCGATTGACGCAACAAACTGACGTAGTCGACCTCATCGATCCGACCCCAGGTAATCAATGTGATGACAATGCCGATCACCCCGACCGCCAAGGCAACCCAAGCCACGTGGCGCGGCAATGCCGGCCACTCGCCCGGACTGGAATTCACTGCCGCAGCCGGCAAAGGTTCGAAGGGATTGGCTTGGCTCATGAGGTACTCCCTGTCGAGGTCTGAATCCATCGAAACGCGAGAGTACCGCCCCTCCCAGCAGGGCAATAGCTCGAGATGGCAGAACTGTGCGGTATGGCCAGACAACGGTCAGCACCTACAAGGCATGCCCATACCCATTTTTCTACGACGGACAAATCGTCTTTTAAAAATCAATGAGTTGCCGGATGACGAGAAAAAATGGTCAACCACCACCGAATCCCGCCATACCTTGAGCGATGCAAGTTTGCCGGCTATCGCGCCTA # Right flank : CTTGGCAGCCACAAGCAAAAGGGCTTAACTGCCAGCATTGTTTCAGGAGCCCCTCATGGACGACATCAGCCCCTCCGACCTCAAGACCATCCTCCATTCCAAACGCGCCAACCTCTACTACCTGCAGCACTGCCGGGTGCTGGTCAACGGTGGGCGGGTGGAGTACGTGACCGACGCAGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAACACCACCACTATCCTCCTCGGCACCGGCACCTCGATCACCCAGGCGGCGATGCGTGAGCTGGCCAAGGCCGGCGTGCTGGTGGGTTTCTGTGGCGGTGGCGGCACACCGCTGTTCTCGGCCAACGAGATGGACGTGGAGGTCGCCTGGTTCTCGCCGCAGAGCGAGTACCGCCCCACCGAGTACCTGCAGAAGTGGGTAGGGTTCTGGTTCGATGACGGCAAGCGCCTGGAGGCGGCCAAAGCCTTTCAACTGGCGCGCCTGCAACGTATCCGCCAGGGCTGGC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTCAGAAA # Alternate repeat : TCACTGCCGAGTAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 1617184-1620396 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGUV01000002.1 Pseudomonas oleovorans strain NCTC10692, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1617184 28 100.0 32 ............................ TGTTCAAGGCCACCGACTACGCGCTGATTCGC 1617244 28 100.0 32 ............................ ATGTATGCCGGTGCGGTTTGCCCGGCCTCCAG 1617304 28 100.0 32 ............................ TGCTGGATCTGCCAGACTGACACACTCAGGTG 1617364 28 100.0 32 ............................ GCCGCGCCACGAAATCCACATATCCCCAACCG 1617424 28 100.0 32 ............................ TGCGCATCAGCGAGGCTGCACGCGAGCTGGGT 1617484 28 100.0 32 ............................ AGACATTCGAACAAGGCTGGGCAGCTCGGCCG 1617544 28 100.0 32 ............................ TCGATATCGATACGCGGCGCCATGCCCCACCA 1617604 28 100.0 33 ............................ GCACTGTCAGAGGTTGACGGCGTGGTATATCAG 1617665 28 100.0 32 ............................ TCGAGCTGGGCCTGCAACTGCACCACTGAGGG 1617725 28 100.0 32 ............................ AGCCCCAGAGCCAGCACGTAGAGAGTAAAGAC 1617785 28 100.0 32 ............................ TAGCATATCAGGCAGGCATCACGCTGCCGATG 1617845 28 100.0 32 ............................ TCACACAATAGAAACAACGCGCTGCTCTTGAC 1617905 28 100.0 32 ............................ ATGAGTCGCGCCAGGTGTTCGCGCTGGCTGTC 1617965 28 100.0 32 ............................ ACAGTGGAGTAAGGCAGGAGCGAGGATGTGTA 1618025 28 100.0 32 ............................ TGGGCGCTGGCATCTATGACCGCCTGGTGGAA 1618085 28 100.0 32 ............................ CGACCATGAAAGAGCTCGCCGCCGCGGCGGGC 1618145 28 100.0 33 ............................ ACGATATGAGCGCTGAGCTGATCGCGCCTCGAC 1618206 28 100.0 32 ............................ AGGCTGAACGAAGGGGCGTTGATGGTAAGGTC 1618266 28 100.0 32 ............................ AGGTGCTAGCGTGCATCGAGCGGCAGGCGGTG 1618326 28 100.0 32 ............................ AAGCCACACGCGGCCGGGCTGCCAGTTCCAGC 1618386 28 100.0 32 ............................ ATGGCTGTGGTCGGCATCATCGTGCGCATGCT 1618446 28 100.0 32 ............................ AGCGTGTGCTGATAACCGTAGTCGATCCCGTA 1618506 28 100.0 32 ............................ ACTTGGCAGGACGAACAATGCCCGAACATCCC 1618566 28 100.0 32 ............................ AGATCGGGATACAACTACCGCGACTATACATG 1618626 28 100.0 32 ............................ AGTTCGAGTGGGTCTTGCAGGTTGAGCAGCAG 1618686 28 100.0 32 ............................ GGGGCTATTATTGAGCGCGGCAGTAATGCTAA 1618746 28 100.0 32 ............................ AAGCGCCTCACTGGCCACGGCCTGGGTGGTGT 1618806 28 100.0 32 ............................ ATCCGCATGACGTGACCTCGTTCCCGTGATCC 1618866 28 100.0 32 ............................ AGCGCCCGAGGCGCGCGAGCTGATTTCTCGCC 1618926 28 100.0 33 ............................ TACTGCGTTGACGCCGGGCAGGTTGATATTGGC 1618987 28 100.0 32 ............................ AAGCTGCAAACCGCGCGCACTATCGGCGGCGT 1619047 28 100.0 32 ............................ TCGCCAGTGCGCTCGTCGCGGTAGATCTCGGG 1619107 28 100.0 32 ............................ AGCTCCGGCAGCGGGTTCGGGTCAGTCCAGAA 1619167 28 100.0 32 ............................ TGCCACACGCGGCCGCAGGCGTAGAGCGTGGT 1619227 28 100.0 32 ............................ ACGCCCTGCGCGTAGTTGCAGTACCTGCCTCG 1619287 28 100.0 32 ............................ ATAAGGCGGCGACTAGGGATTCCAGTCGCGTC 1619347 28 100.0 32 ............................ TCCAGCTCCGCCAACTGATCGTCTGTAATACT 1619407 28 100.0 32 ............................ GTCTAAGGCGAAGTCTGGCTCGGGCAGCTCAG 1619467 28 100.0 32 ............................ GTGGCCGAAGCGGAGAAGGTGCTGATGGCCAT 1619527 28 100.0 33 ............................ TGGTCACGGATCTGGTTCAGGGTCATGGATTTT 1619588 28 100.0 32 ............................ ATGAAACGGCCTGCGCTCCAGCCACAAATCCA 1619648 28 100.0 32 ............................ TGGGCGATGGTGGCGAGGATGGCGCCGATGGT 1619708 28 100.0 32 ............................ TTGGCGATCTGGGCGTTGCAGGTTTTGCAGTT 1619768 28 100.0 32 ............................ AGCAGCAGCCAGTGCGCGGCAATCCGTCGGCA 1619828 28 100.0 32 ............................ AGGCGATGCCGAGCAGTGGATAGCCTCGGATG 1619888 28 100.0 32 ............................ CCGTCCAGAACGCGAACTGCAGCAGGTTTCGG 1619948 28 100.0 32 ............................ ATGCTAACCACAACGGCGAGGCGAAACGAGGA 1620008 28 100.0 32 ............................ ATGGGTTGGTCGGCGGCGGTGCTGGTGGCAGC 1620068 28 100.0 32 ............................ TGGTCGATGAAGACCAGGACTTTGTCCGGGTT 1620128 28 100.0 32 ............................ TAGCACCGGCGAAGTTTGCCCCCCTGGCGATG 1620188 28 100.0 32 ............................ TCGTAATGATTTGGCGCAAACTTCCCCCACTT 1620248 28 100.0 32 ............................ TTGAAGGCTTCGCCATTGGTGGCGCCGCACTG 1620308 28 100.0 32 ............................ TGCTGCAGAACGCGTTGCATCCGCTTGCGCTC 1620368 27 82.1 0 ......................TT.CG- | AA [1620389] Deletion [1620395] ========== ====== ====== ====== ============================ ================================= ================== 54 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AGCGCTGGATAAGTTGCTGGCGCTGAACTGGCTCAGCGGCATGCGCGACCACTTGAACCTGGGTGAACTGGCGCCCATCCCGGCGAAGGTGCGCTGGCGCTGCGTCAGCCGCGTACAGGTGGACAGCAACCCGGAGCGCGCCCGCCGCCGCCTGATCAAGCGCCACGGCATCAGCGAAGCAGAGGCGCGCCAGCGCATCCCCGACAGCGCCGGCAAACGCTGCGACCTGCCTTATGCCACCTTGCGCAGCAACGGCAGCGGTCACAGCTTCCGCCTGTTTATCCGCCACGGCCCACTGCTCGACAAACCCACCCCCGGCACCTTCGGCGCCTACGGCCTTAGCGCCCAGGCCAGCGTGCCCTGGTTCTGACCCTTTTTCCCAGCCCAAAACGGAGCCCTTGCAAAATCAAGCACTTGCAAGCGGCTCCGAAAAAAGGGGTAGCACCGGAAAAATCGGGCAGGTTCTTTAACAATCAAGCCGTTAGGGTTATTAGGCTCTA # Right flank : GCGCACTTCGCTTCGCTCCTGAGCCCGCCCTACGCAAAAATCCGTGTCCGGAACCAAGCCGCCGGTCTAAGCGGAATCGCAGATACGACTCGCTGCCGCACGGACTTTCAGGTGTCCAAACTACGAAACATCACATGGCAATCCACCAGGCCATACCGGGCGTGGCGGTAGGCCTTGGGCAAGGTGCCGACTATCGCGAAGCCGTGTTTCTGCCACAGCGCGACCGCGACCTCGTTGGTGGCCACCACGCTGTTGAACTGCATGGCGCTGAAGCCCAATTCACGCGCCACCTGCAGCGAATGGGCGCAGAGCCGGCTGGCGATGCCGCGGCCACGGGCGGCCGGGGCGGTCATATAGCCGCAGTTGCACACGTGGTCACCCGGCCCAGCGGCATTGGCCTTGATGTAGTAGGTGCCGAGAATCTGCCCGTCCTGCTCGGCAACGAAGGTGGCGCGCGGCAGTTCGACCCAGGTTTTCCAGGCCGTCTCACGATCCATGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //