Array 1 192672-190713 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHMB01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain RS38 scaffold2_size558922, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 192671 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 192610 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 192549 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 192488 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 192426 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 192365 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 192304 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 192243 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 192182 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 192121 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 192060 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 191999 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 191938 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 191877 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 191816 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 191755 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 191694 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 191633 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 191572 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 191511 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 191453 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 191392 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 191331 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 191270 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 191209 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 191148 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 191087 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 191026 29 100.0 11 ............................. CGGCCAGCCAT Deletion [190987] 190986 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 190925 29 100.0 32 ............................. GGCGATGCGGGCGCATTGTACGCGATGCAGAC 190864 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 190803 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 190742 29 93.1 0 A...........T................ | A [190715] ========== ====== ====== ====== ============================= ================================= ================== 33 29 97.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 210570-208954 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHMB01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain RS38 scaffold2_size558922, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 210569 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 210507 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 210446 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 210385 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 210324 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 210263 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 210202 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 210141 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 210080 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 210019 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 209958 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 209897 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 209836 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 209775 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 209714 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 209653 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 209592 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 209531 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 209469 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 209408 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 209347 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 209286 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 209225 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 209164 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 209103 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 209042 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 208981 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //