Array 1 28-476 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORYU01000408.1 Xanthomonas fragariae strain ICMP 6277 isolate ICMP 6277, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28 28 89.3 33 TGA......................... ATGGTCATTGCGATCAACCTGTTTACGTTCTTC 89 28 100.0 32 ............................ GAAGACGGCAGTGTCATGCAGTTGCAGCAGAT 149 28 100.0 32 ............................ CTTGTATTGGGCTGTGTCTACTTGAATTGAAG 209 28 100.0 32 ............................ AGTACCAGGGCAACGTCCAGTGCGCATGCAAT 269 28 100.0 32 ............................ GCTAGCGCACTGACCATCACCAGGGAGACAGG 329 28 100.0 32 ............................ ACCACAATGTTAGAGGTATCGATCCACTGCAC 389 28 100.0 32 ............................ ATTGCGTCATGATCACAGCATCGCCGCCATTC 449 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 98.7 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : CGGCAGTGAACATCTGCTGCAACTGCAT # Right flank : AAATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGTTCCGTAGACCCTCAAGACCCTCGTTGCGCGTAGCGCCGTTCAAACTCTACAGGGGACAGGTCGCCAGTTGAACCGTGGCGGCGCAAACCCAACGCTGGTTGCTTGGTTCATTCGGACCAAGGGTCTGTCTACACCAGCGATGACTGGCGCAGTTTCCTGGCGTCCCATGGCTTGGTGTGCAGCATGAGTCGGCGTGGCAACTGCCACGACAACGCACCCATGGAGAGCTTCTTCGGACTGCTCAAACGCGAGCGGATCAGGCGGCGGACCTATTCCACCAAGGACGCCGCTCGCGCCGAGGTATTCGACTACATCGAGATGTTCTACAACCCCAACCGCCGCCACGGTTCAACTGGCGACCTGTCCCCTGTAGAGTTCGAGCGGCGCTACGCGCAACGAGGGTCTTGAGTGTCTACGGAACCCTGGGCGTATCACTGCTCTTCTTGACG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1627-578 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORYU01000040.1 Xanthomonas fragariae strain ICMP 6277 isolate ICMP 6277, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1626 28 100.0 32 ............................ TTCGCGGGCTAACGTCGGCATAGCAGCAATGA 1566 28 100.0 32 ............................ AAGGCGTCACGCCCGGAACGCTGATGCCGTTG 1506 28 100.0 32 ............................ ACGATGCTGCCGCTGGTGCCGAACACGTAGGC 1446 28 100.0 32 ............................ AGGAAGATCGCCAGGAGGACCAGGACGGTGAC 1386 28 100.0 32 ............................ GTCCTCATCTACACCACGCATCCCTACATCGT 1326 28 100.0 32 ............................ ATGAGCGGCACCGCTCAGATAGGCAATAACAC 1266 28 100.0 32 ............................ GTTGCCGGGTTGCCCGGTGTATAGCTCGATTG 1206 28 100.0 32 ............................ ATCACGGTCAGTACGGCACCGCCGATCGCTGC 1146 28 100.0 32 ............................ ACAAAGCGCGATGCACCGCGCTGGGAATCTCC 1086 28 100.0 32 ............................ AATCACGGTGTGGTAGGTGTCGATGTGGGAAA 1026 28 100.0 33 ............................ ATGGTCATTGCGATCAACCTGTTTACGTTCTTC 965 28 100.0 32 ............................ GAAGACGGCAGTGTCATGCAGTTGCAGCAGAT 905 28 100.0 32 ............................ CTTGTATTGGGCTGTGTCTACTTGAATTGAAG 845 28 100.0 32 ............................ AGTACCAGGGCAACGTCCAGTGCGCATGCAAT 785 28 100.0 32 ............................ GCTAGCGCACTGACCATCACCAGGGAGACAGG 725 28 100.0 32 ............................ ACCACAATGTTAGAGGTATCGATCCACTGCAC 665 28 100.0 32 ............................ ATTGCGTCATGATCACAGCATCGCCGCCATTC 605 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT # Right flank : AATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGTTCCGTAGACCCTCAAGACCCTCGTTGCGCGTAGCGCCGTTCAAACTCTACAGGGGACAGGTCGCCAGTTGAACCGTGGCGGCGGTTGGGGTTGTAGAACATCTCGATGTAGTCGAATACCTCGGCGCGAGCGGCGTCCTTGGTGGAATAGGTCCGCCGCCTGATCCGCTCGCGTTTGAGCAGTCCGAAGAAGCTCTCCACGGGTGCGTTGTCGTGGCAGTTGCCACGCCGACTCATGCTGCACACCACGCCATGGGACACCAGGAAACTGCGCCAGTCATCGCTGGTGTAGACAGACCCTTGGTCCGAATGAACCAAGCAACCAGCGTTGGGTTTGCGCCGCCACACCGCAGACAACAAGGCCTGCACGACCAACTCGGTGTCGGCCCGATCGCGCATCGCCCAGCCGACGACCTGCCGGGAAAACAGATCGATCACAACAGTCAGGTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //