Array 1 268418-269540 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYOY01000001.1 Streptomyces sp. ERV7 Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 268418 28 100.0 33 ............................ CCCCCGGAGCAGTGCCCCGAACCGCCGCCGACC 268479 28 100.0 33 ............................ TCGGCTTGGGCTTGCGGACGCCGCCGACGCCCT 268540 28 100.0 33 ............................ GCCCGCACCCCCCAGCGCAAGGCCCTCCTGCGG 268601 28 96.4 25 .........................C.. CCATCCCGAGGCCGAGCACTGGATC Deletion [268654] 268654 28 85.7 33 .C..A...G..............G.... CTGTTGTTCTCCGGCGCGATCAGCCCCTCGATT TGT [268661] 268718 28 100.0 33 ............................ GCCTGACGGCAGTTGGGTCTACACCGAGGCAAC 268779 28 100.0 33 ............................ GCTCACGCCCCAGGAGCACGCCGAGCGGGAGAG 268840 28 96.4 34 .............A.............. CCGGCGCCACGGACGTGCGCTACACCGACCCCGG 268902 28 100.0 33 ............................ GCAGCTCGCGGAGCTCTACCCGGCCCCGGTGCC 268963 28 100.0 33 ............................ GTCGGCGGCCTGCATACGGTCGAGCGCGGCCGT 269024 28 100.0 33 ............................ CTCAGACTCGGACCCGTGGGCAGCGGGGTCGTA 269085 28 96.4 33 ........T................... GCCCGCGTCGTCGCGAGCATCGCCGTCTCCATC 269146 28 96.4 33 .................A.......... GAAGATCCCGAATCGAAGGAGACCGTGATGGCC 269207 28 100.0 33 ............................ CTGGTCGAGTGCGTAGCACTGGCCGTTCTCGGC 269268 28 100.0 33 ............................ CTGGCTGGACTCCGTTTTTATCGGACGGACGAC 269329 28 100.0 33 ............................ CCTGCGTCGGCATCGCATCCCCTTGTCCGTATT 269390 28 100.0 33 ............................ GCGGACCCAGCGGTCGAGCCCGCCGTTGTCGTG 269451 28 89.3 34 ...........T.....A...C...... AGGCCTTGGGCCAGATACGCCGTGGTCGAGGGTG 269513 28 92.9 0 ....C....T.................. | ========== ====== ====== ====== ============================ ================================== ================== 19 28 97.6 33 GTCGTCCCCGCACCCGCGGGGGTAGTTC # Left flank : GCTGGGCCTGTTCGCGTCGGGCCGCTCGGCGCCCTCCGTCCCGCTGTCCCGCCGGCTCCACCTCGTGGACGACGACGCGCTGGTCCGCCATCTCCGGGAACTCTCCGGAACGGACTCCCAACTCCTCGCGGACGAGTCGCTGTTGCGCATGGTGCTGCCCGCGCTGCGCGGCGACTACCGCGCGCTGGAGACGCACACCCCCGAGCCGGGCCGGACGCTGGCCTGCCCGGTCGTGGCCCTGTGCGGCGACGCCGACCCGGTGGTCGACCCCGACGACGTGGCGCTGTGGGAGCGGCACACCTCGGCGTCCTTCCGGATGCGGGTCCTGGCCGGCGGCCACTTCTTCCTGGACGCCCATCTGCCCGTCGTGGCACAGGAGGTCCGCGAGCACATCGCGGCCACGACCGCGCGCTGAAGGGCGAGTGCCGGGGCCTGCCGGAGACGGCGGGCCCCCGCGCTCATCCCGCGACGCCCTCCCGCCCCACGCACACAAGGGGGGG # Right flank : CCGTCTACTGCCGCTGCTGTTGAAGGGGCCCACGCAGTCCAGATCCGCCGCCCACAGGGACTCGTCGACGGCAACAGACTGGGCGGCAACCGCGGCCTCTCCCGCGCGGGGCGGACCATTGTGTCCTGGAGGGACAGATGGGTGCCAACGCTGAGGGAGCGAAGGTCCACAGTGCCGTTCACGGTGCACCTTTTGACCGTGAATTCCTGGGTGGTACGGGCACTGGACGCGTAAATACCGGGGAGTCGACACAGATCATCCCGGTCGCGACCCAGCTGGAGCACAAGGACGAGTACCCGATCGTCGATCATCTCGTCGCCGAACATCGCCGAGCCCTTCTTCACTTAGCTCAGGCGCTTCGAACTGCCCGCCTGATAAGAGCGGTGCCTCGTCGAACCGGCACTGCCGCAGACGGACGGCGCCTTGTACGGCAGCCTCCGACAGATCCAGAACGCCCCGAATGCGTACACCGCGCAGCCGTAGGCGGGCCAGATGGCCGA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCCGCGGGGGTAGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [8-7] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11404-11132 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYOY01000115.1 Streptomyces sp. ERV7 Contig_98, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11403 28 96.4 33 ...A........................ AGCATGCTGGTCGACCAGTACCGGGCCAGCAGA 11342 28 92.9 33 .....T.................T.... GCTGACGGCCGAGCGGCTGGCCGTCGGCGCCAC 11281 28 96.4 33 ................T........... GACCGAGGACGCCCCCGAGCAGGCATGACCCGC 11220 28 100.0 33 ............................ GTTCGGGTTCTTCCTGTGCCGGTGGAGGCCGCC 11159 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 97.1 33 GTCGTCCCCGCACCTGCGGGGGTAGTCC # Left flank : CACCGCTGCCGCCGGTCCGCCGGCAGCCGCCCCCACGTCAGCCCCGCCGCCCTGACCGGAGCAGCCTCCGCATCGTCCATCGCCTGGAAAGCAGGACACGCCTTCCCGCAGTCATGAATCCCGCAGATCCACATGAACCACAGCCGCCCGCGCCCACCACTGACCTCCTCCAGCCGCTGCCGCAACGCGGCCGACAGGTACCGCTCCCACATCACCTCGGCCACGGCAGCGGTATCCAGCAGGTGCCCGAGCAGCAAATGGGACCGGCCCCCGTTCCGTGCCGCGGACTTCCCCCACAACCGCGACACCCTGGCAACAGCTGCATCCGAGAGGCCCATCACACGCATCAGGTCCACAACCGACCGCATGTCCTCCACCGGCACAGCCCCTTCCGTACAGTGGACCCGCACCATAGACCCACGCACTGACAACGGCCCCCAGCCACCGATGCCATCGGATGAAAACCAGCTTCACCGCTAGCATTAGCCCAGGTCGAGAAG # Right flank : GCGGCCTGGGCGCCGTTCTAACTGATCGTTTCAGAATCAGGTTCGGAGTCGCCGCAGACAGATGATGCTGCAGGCGAGTTGGAGCAGGCCCAAGTGGAGGTCGGCGCGTATCTCGTAGCGGATCCGCAGGCGCTTGAACTGGTGGAGCCAAGCGAAGGTCCGCTCGACCACCCAGCGGGTCTTGCCGAGTCCGGATCCGTGGGCGACGCCGCGGCGGGCGATCCTCGGGGTGATGCCCCGGCGGCGGAGTATGCGGCGGTACTTGTCGTAGTCGTAGCCGCGGTCGGCGAACAGCCGGCGTGGTCGGCGGCGGGGCCTGCCGCGCAGGCCCCGGATCGGTGGGATGGCGTCCAGCAGCGGCAGGAGCTGGGTGACGTCGTGTCGGTTGCCACCCGTGAGCGTGATGGCGAGCGGAGTCCCCTGGCGGTCGACGATCAGGTGGTGCTTGGAGCCAGAACGGGCGCGGTCGACCGGCGAGGGGCCAACAAGATCCCCCCTTT # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCTGCGGGGGTAGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 21031-23313 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYOY01000115.1 Streptomyces sp. ERV7 Contig_98, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 21031 28 100.0 33 ............................ CTGCACGCCCGCCAGCCCGTACACGGTCGCGGT 21092 28 96.4 33 .................A.......... CGCGACCCCAACGCCGGGTACCTCATGGACCAG 21153 28 96.4 33 ........T................... GCGGCGTCCGGCGATGTAGTGGCGGCCCTCGGT 21214 28 92.9 33 ...A.....................C.. CTGCTTGGCGGGCGCGCAGGTGGTGGGCGTGGG 21275 28 100.0 33 ............................ CAGGGCGCCGAGCACGTTGGCCGGCGGGGCGTC 21336 28 96.4 33 .........................G.. TACGAGCCCGACGACACGCTGGGGGGGGCCCGG 21397 28 100.0 33 ............................ CTTCACGCTCATCTCGTAGGAGGCGGCCGTGGC 21458 28 100.0 33 ............................ TCCTCTCGGAAATTCTCGGGCGCCCTCGTTGAC 21519 28 100.0 33 ............................ TCTGCTACACCCCCGGCTGTACCAGGCGTACCG 21580 28 100.0 33 ............................ CAGCAGAGGACTTGGCCCAGGAAGTCTTCGTCC 21641 28 96.4 33 .................A.......... CCAGGTGATCGCGATGAGCGGAGTGTGCTCCCA 21702 28 96.4 33 .................A.......... GTCGTCGAGCAGATCATCGCCGCCCTCACCGAA 21763 28 100.0 35 ............................ GGTGTCCTTGCGGCCCTTGCGGGGGGGGGGACGCC 21826 28 100.0 33 ............................ CTTGGCCTCGGCGCGGGCCTGGAGGCGGGCCTG 21887 28 96.4 33 ..............T............. GCTGCGCAACGTCGACTTGCTGCTGGGTGCGAC 21948 28 96.4 33 ....C....................... GGCCACCCGCACACGCTGCCGGTAGACGAGGCC 22009 27 96.4 33 ..............-............. GGTGGTGTCAACGCGTCCCGAAGCAAGAGCGCC 22069 27 96.4 33 .....................-...... CGCGCGGCTGAACATCCCGAGTGTCTACCGGCT 22129 27 92.9 33 ........T........-.......... CGCAGATCGCGGACCCGGCCACACCCGTACTGC 22189 28 100.0 33 ............................ CGACGGTACCCGCCTCACCGCGGCCCGTACGCC 22250 28 96.4 33 ...................C........ CTCGTCGACGCCACCGGCCGCAGCTACGGCGGC 22311 28 100.0 33 ............................ TCTTTCCATCCCCGTAGAAGTGCGGGACCAGTT 22372 28 96.4 33 ...................A........ CCTGTACGACCCCGAGACGCTGCCCCAGCTCGC 22433 28 100.0 33 ............................ CGGCCCACACACCACCACTGACCGACCCGCAGC 22494 28 100.0 33 ............................ TGCGAGTTCCATGACGGAATGCTAGACCCATTT 22555 28 100.0 33 ............................ TCCCCGTACGTACGCGGATTGGGCTGTGTCGCG 22616 28 100.0 33 ............................ AGGCTCCGACCCGCCGCCGTTGCGGCTCTTGTC 22677 28 100.0 33 ............................ CTGGATGGCGGCCGGAGCCAAGGCCGCCGGGAT 22738 28 100.0 33 ............................ TGCTCCGCCACTCGTGGAACAGCCTGCGTGAGA 22799 28 100.0 33 ............................ GAGGCCCTGCCCCAGGCGCTCGGACATCCATGG 22860 27 96.4 33 .....-...................... CCGGCGCCGGGCTTGGCCGTAGTTCAAGTACGT 22920 28 100.0 33 ............................ CACGGACCCGTCACAGTGGTGAACCAGCTTGTT 22981 28 96.4 33 .....................C...... CTTCTCCGTATCCTTCTCGCGCAGAGTTTCCAG 23042 28 100.0 33 ............................ GGTCAGGCTGCTGTCGGTGAGGGTTCCGCCCTC 23103 28 92.9 33 ........TC.................. TCGGTTGTTGGGCTTGCTCTTCGCGCCGTTCGC 23164 28 100.0 33 ............................ TGCCTGATGAGCGTGGCCAGTTGACGGTCGACG 23225 28 100.0 33 ............................ AGTGCCAGAGGTGTACGCGGACCGACCTGTCAC 23286 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 38 28 98.2 33 GTCGTCCCCGCACCCGCGGGGGTAGTTC # Left flank : GTCAACAAAGCACGCGTCGTGCACGTTCCGGAGGCCTGGCTCGCCGTCCTCCTCATCGGCCCCGGAAGCCGCATCACGCACGCAGCCGTCACCCTGCTCGCCGACTCCGGCACCGCCCTGTGCTGGGTCGGTGAGCACGGGGTGCGCCTCTACGCCTCAGGCCACGGCATCGCGCGCGGCTCCCAGCTGCAGCTACGGCAGGCATGGCTGGTCACCCGGCCCAAAGAACGCGTCAAGGTCGCCCGCCGCATGTACGACATGCGCTTCCCCCGGGAGGACACCAGAGGCCCTCACCGTCCAGCAACTTCGAGGACCGGAAGGCACACGCATCCGTCGGCTCTACACCCAGCACTCCGAACGCACCGGAGTGCCCTGGACCAAGCGGAAATACAAACCCGGCGACGCCTTCGCAGCAGGCGATGACGTCAACCGCCTGCTGTCCGCAGCAAACTCCGCCCTCTACGGCATTTACCACGCCGTCATCACCGGCCCCGGCGTCA # Right flank : CCAGTCCTGGAGGCTGGAGTAC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.93, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCCGCGGGGGTAGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 827098-827241 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYOY01000040.1 Streptomyces sp. ERV7 Contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================== ================== 827098 26 96.2 34 .......................G.. CCACCCACGATCCGCAGACAAAAGACGGCCCCTT 827158 26 100.0 32 .......................... GCCCCTCACCGGCCTGCGGGCAAACACGGGGC 827216 26 96.2 0 ........................C. | ========== ====== ====== ====== ========================== ================================== ================== 3 26 97.5 34 CAGGGGCGCGGGGAACTGCGCGACAA # Left flank : GCCGAAGCGGCGCTCGAAGAGCATACGGTCGGGGGACTCGGTGAAGTCGATCTCGGCGTACTGGCTCCGGGAGGAGCGGCTGCCGCGGGGGTCGCGGTCGAGCGCCTCCACGGTGTCGCAGAGCGCCCACGCGAAGTCGAGCACCGGCACCCATCCCCAGGCTGTGGACACTTCGCGGTCCGCCTTGGTGTCGGCGAGGTAGACGTCTCCGCAGAAGAGGTCGTGGCGCAGGGCGTGGACGTCCGCGCGGCGGTAGTCGGTCTGCGGGGGGTCGGGGAAGCGGTTGGAGAGGGAGTAGCCGATGTCGAGCACGCGTCGATGGTCCCACGGCTGCGCAGGGCTCCGCCCCGCCCCTCCGGGGATGCGGGCCCCTCCGGGGATGCGGGCCCCTCCGGGGATGCGGGTTCCTCGTCTGCGGCCCGGCGGGGGCTGGCCGCGCAGTTCCCCGCGCCCCTAGGGGGTGACCGGCGCCCGGAGAACCCAGCTCAGCCACAGGCTTT # Right flank : AGCCACCCACCGGCCCGCAGGCGAAGTCCGGGCCCAAAAGGGGCGCACTCCTCAGCCCCGCCCGGAAACCCGGTCCGCCAGCGCCGCGATCCGGTGCGTGGCCGCCGAGTGGGCGGACAGCTCACGGCGGTCCGCCTCCCGGTACGCCGCGTACATGCCCTGCACACCCAGCCACCGGAAGGGCTCCGGCTCCCAGCGGCGGACCTTGTGGCCGACCCAGGGCAGGGCGGTCAGTTCGGTGGGGCCGCCCTGGCCGGAGTCCTGCTGGACCAGGTCGCGCAGGGTGCGGGCGGCGAGGTTGGCGGTGGCCACGCCGGAGCCGACATAGCCGCCCGCCCAGCCCAGACCCGTAGAGCGGTCGAGGGTGACGGTGGCGCACCAGTCGCGCGGCACCCCGAGCACCCCCGACCAGGCGTGCGTGACGTCGACCCCGGCGAGCTGGGGGAAGAAGCGCAGCAGGATGTCGCGCAGGGCCTCGATCGTCTCCGGCTGCGTACGGC # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGGGGCGCGGGGAACTGCGCGACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 1624-7 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYOY01000083.1 Streptomyces sp. ERV7 Contig_69, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 1623 28 100.0 33 ............................ CCAGTCCTGGAGGCTGGAGTACGGCACGAGATC 1562 28 100.0 33 ............................ GGCCCGCATGGTCGCCGTTCGGCGCCGCACACC 1501 28 100.0 33 ............................ GTCATGGGCGCCCTCGGTCTGCCGGTCGCCCCG 1440 28 92.9 33 .................A...A...... GAGCCTTGAGTGGAGTTCGGGCCGCATCCGCTT 1379 28 100.0 33 ............................ CCGTCCCCGCCCGTCCTACCGGCACGACGGCTG 1318 28 100.0 33 ............................ GCGGCGCTGGGAGTCCATCCCCGGATTGAAGCT 1257 28 100.0 33 ............................ CACAGGCCCGGCGCTGCGGTCGCCGATGACTGC 1196 28 100.0 33 ............................ TTGATGCTGTCGAATCGGACGCTCGTTCCGGGG 1135 28 100.0 33 ............................ GGTGTTCATCGCCTGAGCGGCGATCGTGGCCGA 1074 28 100.0 33 ............................ TGGCAGCGGCTCCCACCGCCACCGCAGCACCGG 1013 28 100.0 33 ............................ TCCTCGGCGCGCTCGCCCGGGGAATCGCGTCGA 952 28 100.0 33 ............................ GGGCGCGACGCCTCCTCACCCGCCGACGACTCG 891 28 100.0 33 ............................ GCTCAGCAAGTGGGGCCGGTTGTCGAACTCCGC 830 28 100.0 33 ............................ GACGTCCGCCATCGGCGCTCACCCCCCGGATTG 769 28 100.0 34 ............................ GACCGGTCCGCAGCAGCTGCTGGACGCCTCGGAG 707 28 100.0 33 ............................ ACTGCCGTGGCGCAGCTGGCGGTACGCGGGTAC 646 28 100.0 33 ............................ ACTGCCGTGGCGCAGCTGGCGGTACGCGGGTAC 585 28 100.0 33 ............................ GGAACGTCGTGACACAGACCAGCGGCACATCGG 524 28 100.0 33 ............................ CTAATGCGCGTAGTGACGGTGTTACCGCATATC 463 28 96.4 33 .................A.......... CAGGCCGCCGACGGCACGCTTCTTGTCCGCCTT 402 28 100.0 33 ............................ GTACGCCCGGCAGGAGATGACCAGCCCGCCGGA 341 28 100.0 33 ............................ CCCGGCGTTGGTCATGTCGACGGCGTGCCGGTT 280 28 100.0 33 ............................ GATCGATGCGACGTGGCGGCGCGGGACGATCTC 219 28 100.0 33 ............................ TCCCCCGGATCCATCGACTCCCTGCGTGAGTTC 158 28 100.0 35 ............................ TGTAGGGGTGTGCGCTTTACGCACACAAGGGGGGG 95 28 100.0 33 ............................ CCCCCGGAGCAGTGCCCCGAACCGCCGCCGACC 34 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 27 28 99.6 33 GTCGTCCCCGCACCCGCGGGGGTAGTTC # Left flank : CGCGGGGGTAGTTCCACAGGCCCGGCGCTGCGGTCGCCGATGACTC # Right flank : CTCGGCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCCGCGGGGGTAGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //