Array 1 436964-437297 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001973.2 Dickeya sp. CSL RW240 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 436964 29 100.0 32 ............................. TGTATGAAGGTGTCAGTTTGCCGCCGTGGTTG 437025 29 100.0 32 ............................. TAGCCGGATGGATTTCTGGTAAAACGCGGGCA 437086 29 100.0 32 ............................. GGTTACGGAAGGGTAATGTCCAGCAGTTCAAC 437147 29 100.0 32 ............................. TTCCTGCCGGGCTTTATGTCGGATTTGGTTCT 437208 29 100.0 32 ............................. GCATCGTCTACATCGGCCTGGATGCGTTGTCA 437269 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCCGCTGGTGAAATTGAACCGCCGCAGGCACCGCCGGACGCACAACCGCCCGCCATTCCCGAACCGACGCCCTTTGGCGACGCCGGGCACCGGGGCCATGGCGGATGAGCATGCTGGTGGTGGTAACAGAAAACGTGCCGCCGCGCTTGCGCGGCCGGCTGGCGGTCTGGCTGCTGGAAGTGCGCGCCGGGGTGTATGTGGGCGACACCTCGCGCCGGGTACGGGAGATGATCTGGCAACAGGTGGTGGAACTGGCCGAACAGGGCAATGTGGTGATGGCCTGGGCCACCAACACCGAATCCGGTTTCGGGTTCCAGACTTACGGTGAAAACCGCCGGATGCCGGTGGATCTCGATGGCCTGCGGTTAGTCTCTTTTCACCCGGTTGAAAATCAGTGAGTTAGCGCTCTTTAACAACCGGGAAAAATCGGTAGAATTTTCCAGTCTTTAAAATACCTTATAAAACAGGTATCTACTTTTAGA # Right flank : GGGTTGGTCGTGACGATATGCGCCTCGTCTATCGTGTTCCCCGCGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGCCGTTGGGGGCAGAAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCTCGATTGCAGTTTGTACCGCTTCAATAGCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGTACGCTATCGGTTTCAACTGGCACGATGTCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCACGTTATGGCCAGACGTTTGATGCCATTTAGTGTTCCCCGCGCCAGCGGGGTAAAAAAGAGAAACCCGATGACGGGCGGTACGCGTCATCGGGTTTTTGCTTATGGAACTGCGTTACGCAGGCTGACGATTAAAACGAGTGCCAGTCATCTTCGCTGTTTGCGGTTTTACGCGATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 437466-437677 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001973.2 Dickeya sp. CSL RW240 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 437466 29 100.0 32 ............................. CTCGATTGCAGTTTGTACCGCTTCAATAGCGC 437527 29 100.0 33 ............................. GGGTACGCTATCGGTTTCAACTGGCACGATGTC 437589 29 100.0 32 ............................. TCACGTTATGGCCAGACGTTTGATGCCATTTA 437650 28 86.2 0 .....................-....AAA | ========== ====== ====== ====== ============================= ================================= ================== 4 29 96.5 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTCCCCGCGCCAGCGGGGATAAACCGTGTATGAAGGTGTCAGTTTGCCGCCGTGGTTGGTGTTCCCCGCGCCAGCGGGGATAAACCGTAGCCGGATGGATTTCTGGTAAAACGCGGGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGTTACGGAAGGGTAATGTCCAGCAGTTCAACGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCCTGCCGGGCTTTATGTCGGATTTGGTTCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCATCGTCTACATCGGCCTGGATGCGTTGTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGTTGGTCGTGACGATATGCGCCTCGTCTATCGTGTTCCCCGCGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGCCGTTGGGGGCAGAAAA # Right flank : AGAGAAACCCGATGACGGGCGGTACGCGTCATCGGGTTTTTGCTTATGGAACTGCGTTACGCAGGCTGACGATTAAAACGAGTGCCAGTCATCTTCGCTGTTTGCGGTTTTACGCGATGAGGCGGCCGGTTTTAACGCCAGTGTTTTGGTGGCGGAGGCCGGTTTTACCGGGGTACTGGCAAGCATTGGCCGGTTGCCGGAGGCTCGATAAGCGCCGTGCCCGGCTTCTTCCAGATGGAACAGGCTAACCACCTGTTTTAACTGCTCGGCCTGTTGCTGCAAGGCTTGGGTGGCATCGGTGCCTTCTCGCACCAGCGAGGCGTTTTGCAGCGTGGTTTGTTCCATTTTATTAATCGCCTGGTTGACCTGCTCGATACCCAGTGACTGTTCCTGACTGGCAACGCTGATTTCACCGACCAGTTCGCTGACTTTGCGCACGCCATCGACAATGCCCTGAATGGAGACCCCGGCTTTTTCCACCAGCCGGTTACCGGCATCCA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 672416-673664 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001973.2 Dickeya sp. CSL RW240 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 672416 29 100.0 32 ............................. ATAACTATTCGCCGTGATATGTGCAATATCGC 672477 29 100.0 32 ............................. CGCCCTTCGGGTAACCAGAACTTAAAGTCGGC 672538 29 96.6 32 .....................G....... GCATGATTCGGATAAAGCTACAGATAGCAGAG 672599 29 100.0 32 ............................. GTTGGCGGAGAGGAGCCGCACCCGCTTAGTGC 672660 29 100.0 32 ............................. CGTGCCAGATGAACGCATCCCCTGATACCAGT 672721 29 100.0 32 ............................. AGCCTCTTCCGCTGTGGCAAAACGAGAGGGTG 672782 29 100.0 32 ............................. GTAAACCTCATGACTGACCTCTATTTAACAGC 672843 29 100.0 32 ............................. TCATTTCGAACACTCTACCAAAGCTGATGGCG 672904 29 100.0 32 ............................. GAGCGCCGCAAAACGTTGATATCAGCAGCTAT 672965 29 100.0 32 ............................. TGTACGAGGGTGTTGTAAGGCTGACGAAAGAC 673026 29 100.0 32 ............................. CGTTTGAAAAATGGATTTCTGAGAACAGCGAG 673087 29 100.0 32 ............................. CACGGGCAATTCTCAATCCTGACATTCACGCC 673148 29 100.0 32 ............................. GCACGGGTAAAAACTTCCGCGATGCTGACTAT 673209 29 100.0 32 ............................. GCTGACGAAAGACGGCCAACGCGTTCGTAACA 673270 29 100.0 32 ............................. TCATATTTTTCCCAATCCCTGCGCGTGGCGCA 673331 29 100.0 32 ............................. CGGTTTCGGGCCTGACGGCTAGAGTCTGATGG 673392 29 100.0 32 ............................. GTGGCGGGACTGCACACACGCACCCGAGTTTC 673453 29 100.0 32 ............................. GGGTATGAGGATGTTACGGCCACAACTGAGGC 673514 29 100.0 32 ............................. TTCAAAAATGGCGAGATGTACACCGCCGAATT 673575 29 96.6 32 .............A............... GCAGGTGTAATCGGTGCCCGGTTGGGGCTAAA 673636 29 89.7 0 ...........AT...............A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCTGAATAGCGGCGGAAAATCGTCAAGTGTGGCAGGCTGGTGTTGCACCAGCCTTTCTTTTTGCATTTTGCTCAATTGCTTGATGCGATATTCCCATTTTAGTGCCGTTGAGCGATCGCCCGCCACACAGTAATACACCAGCGTCAGCGGCCCCTTGCCGCGTAATGCCCGCGCCCCTTTTCCGGCCTGGTGCTGTGCCAGCCTGCGCGCCACATCGGTGGTGATACCGGTATAGAGCGCTCCGGCCTCGGTGCGGAGCAGATATAAGAACCATATGCTGTCGCTGCTGTTCACGTCATTTCCTTTTCGTGGTTTAGCGCCTATTTTACGGTGACAGGCCGATACAGGCTGCCTGTTTGACGCCATTTATCGGTGGCAGCCGGTGAGGTACATCACGGCCTTTATTTATCAATAAGTTAGTGTTCTTTAACAACATGAAAAAGTGGGTGGAATTTTTCAGGCTTTAAAAGTCATTAGAAAACAAGTATATACTTTTAGA # Right flank : ATCGACCGTGCTCGCCATATTACCTCTTTTTTGTGATAATATTCACAGTGATGATGTTTTATGTGTCTATTGTTTCTTTTTTATGTGAATAAAAACACAAAAAACAGCGGGCGATCGCGGTGAAATACCGTATCGCTTAAAAAAACCTATCGCGCCCAATGTCTCGGCGTGACCAAAAGCGGAGTGTTGTATGAGTGAACTGACCATAATGGCGCAGCGGGCGCTGGGGCTGATGGATTTAACCACCCTGAATGACGATGACACCGAAGAGAAGGTGATCGCACTGTGTCGTCAGGCCAATAGCCCGGCAGGTAAAACGGCGGCGATTTGTATCTACCCGCGTTTTATCCCGCTGGCGCGTAAAGTGCTGCGTGAGCAGGGGACGCCGGATGTTCGCATCGCCACCGTGACCAATTTTCCTCACGGCCGTGACGATATCGCTATCGCACTGGTGGAAACCAATGCCGCCATTGCCTATGGCGCGGATGAGGTGGATGTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3480300-3480152 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001973.2 Dickeya sp. CSL RW240 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3480299 28 100.0 32 ............................ GATGGCTGACCACGACGATGGCCCGGACGCCC 3480239 28 100.0 32 ............................ ACCAGCGGCCACTCCTCCGGCCTCCTGATGCC 3480179 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGCACTGACGGCACTGGAACAAACTGGCTGGCGCACAGGGCTGCGCGACTATAGCACCATCACCGACGCACTGCCGGTACCAGCGGGTGCGCAGTACCGCACCGTGCGCCGGGTGCAGGTGAAAAGCAGCGCTGAACGCCTGCGCCGCCGGGCGGTGAGTAAAGGCCGAATGACTGCGGATGAAGCCGATGCCCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATTTGCCGCTGCGTAGCCTTTCCAGCGGACAACCGTTTTTACTGTTTGTCGAGCACGGCCCGCTGCAGGACACACCGGTCGCCGGTGTGTTCTCCAGCTACGGCTTAAGCGCGACCGCCACCATCCCGTGGTTTTGACCCTTTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAGGTTTTTCCAGAAAAACGGCGGTTTTTCTTTAACAATCAGGAAATAAGCGATTATTCGCTACA # Right flank : ACACTGCAAAGCCACGCCAAATATCAGAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTCACTGCCGCACAGGCAGCTTAGAAATCGTCAGCCTGCAAAGCAGTGGCCGTCCCCTAGTTCACTGCCGCACAGGCAGCTTAGAAACGAATCGAACGGAGCATTTAGCTGCGCGTCGCGTTCACTGCCGCACAGGCAGCTTAGAAAACCGCCGATGGTGACCTGCTCCGCGATGACCCGTTCACTGCCGCACAGGCAGCTTAGAAAAGTTCCAACGCAGTTCACGGCCGATTCAAATAGTTCACTGCCGCACAGGCAGCTTAGAAAGTTGAGGCTGAACGCCAAGACGACACGCTGGATGTTCACTGCCGCACAGGCAGCTTAGAAATATCCCGGCACCGATGCTCATTAATAGCGGTTGTTCACTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 3492238-3492925 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001973.2 Dickeya sp. CSL RW240 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3492238 28 100.0 32 ............................ ATGCTTGCAACGCATCGATTGCAGCATCACCG 3492298 28 100.0 32 ............................ TATCCCCACATTTCGATTGGGAGACTCGCAAA 3492358 28 100.0 32 ............................ ATAAGAACACCGCTTGACGAATAAACAGATAA 3492418 28 100.0 32 ............................ TGCTGAGCCTTTCATGCGTAAAAATTCTGTGT 3492478 28 100.0 31 ............................ ATATGGCCAACGGCCTGATCCGCCTGCACTC C [3492505] 3492538 28 100.0 32 ............................ AGAATGCCGGTGTGACGGTTAAAGCCACCGAC 3492598 28 100.0 32 ............................ GAGTGTAACCAGCGCATACAACAGCCGGTTTT 3492658 28 100.0 32 ............................ ACTGACGTCATCGCCGTAATCGTTGCCGTTTT 3492718 28 100.0 32 ............................ ATCGCGTACAGTTATTGACAGAACTCCAAGGG 3492778 28 100.0 32 ............................ ACCTCGACAGTCAGGGGATAACGCCAGTTCGC 3492838 28 100.0 32 ............................ AATGTCGCCACAGGCATCAGCCAGTCTGCGCT 3492898 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GTGACCGAAGTACCGGTGCCGAGCATCACCACGCTGGTATTGGCAATCGGGATATTCCAGTACAACGACTGATTCCCCTCTTCGGTGACATATTCCACCCGCCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTGTGGTGGTGATAAAACAACCCTATCCGCGTAATAAAACGCAGACTAATAATTCATTGGAAAACACGTAATACACTGGAAAGTAACGAGAATTAACCTATCACAACCCAAGCAGGAAAGTGAATGACGCCAAAAAGACTTTCCTTATTTTCATACCCTTTTTTTCCGCTGTCTTTTTCGATATTGAAAAATCAACAAGTTACCGACAGCCGAAAAAAAAGGGTCTGACAGCGAAAATCGCCAATTGCGGGCAGAAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : AAGTCGCCGGGTAACTGGCGGCGATAATGTCCAGGTTCACTGCCGAGTAGGCAGCTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGCAGCTTAGAAAGCGATAGCGGCGAATGGGTCATCATTCCGCCCGTTCACTGCCGGATAGGCAGCTTAGAAAAGATTAACCGCTAAAATATCGCAATGAATCCCGTTCACTGCCGGATAGGCAGCTTAGAAATTCAGCTCGCGAGGTCAGTGAGTTCAAATCAGGTTCACTGCCGGATAGGCAGCTTAGAAAGACAAATTCAATCGCCGCTTGTGCTGCTGCGGGTTCACTGCCGGATAGGCAGCTTAGAAAAATAGACGTGTGGACGAACGGCGACGGCGGGAGTTCACTGCCGGATAGGCAGCTTAGAAACAGTTCGCGCCGGGCAATACAGCGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 3493130-3493637 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001973.2 Dickeya sp. CSL RW240 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3493130 28 100.0 32 ............................ AGATTAACCGCTAAAATATCGCAATGAATCCC 3493190 28 100.0 32 ............................ TTCAGCTCGCGAGGTCAGTGAGTTCAAATCAG 3493250 28 100.0 32 ............................ GACAAATTCAATCGCCGCTTGTGCTGCTGCGG 3493310 28 100.0 32 ............................ AATAGACGTGTGGACGAACGGCGACGGCGGGA 3493370 28 100.0 32 ............................ CAGTTCGCGCCGGGCAATACAGCGGTGATGCC 3493430 28 100.0 32 ............................ GACGGACATTATGACCGGCAGCGCTGAGACGG 3493490 28 100.0 31 ............................ TGTAAATCTCTTGTGATATCAGAGATTTTTT 3493549 28 92.9 32 ...........AG............... GATGATATCCACCAGCACATAATGTTCGGCCC 3493609 27 85.7 0 ............G..........-..CG | GG [3493630] ========== ====== ====== ====== ============================ ================================ ================== 9 28 97.6 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : GTAACCAGCGCATACAACAGCCGGTTTTGTTCACTGCCGAGTAGGCAGCTTAGAAAACTGACGTCATCGCCGTAATCGTTGCCGTTTTGTTCACTGCCGAGTAGGCAGCTTAGAAAATCGCGTACAGTTATTGACAGAACTCCAAGGGGTTCACTGCCGAGTAGGCAGCTTAGAAAACCTCGACAGTCAGGGGATAACGCCAGTTCGCGTTCACTGCCGAGTAGGCAGCTTAGAAAAATGTCGCCACAGGCATCAGCCAGTCTGCGCTGTTCACTGCCGAGTAGGCAGCTTAGAAAAGTCGCCGGGTAACTGGCGGCGATAATGTCCAGGTTCACTGCCGAGTAGGCAGCTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGCAGCTTAGAAAGCGATAGCGGCGAATGGGTCATCATTCCGCCC # Right flank : GGTGTTACTGGCGTTAAAACTACGCTGAGGTGGGCAACTTCGCCGGATGCACGGCATGGAGGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGCCAGCGGCGTAGTTTAGCCACTCAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATAAAGCCGCAAAGAAACAATGCGGTTAATCACGCACGAAACCCTCACTCTACCGATAAACCTCACTATCTAACGCCCGGGAAAGGACAATATCAAAACGACGTCCAATCACCATTGCTACCCGCCACCGCCGCCGCCCGTTTTTCCGGCAGCGCCGGAGATAACATCGCTGGCTGACGGGTTGGCGACGTTGCGCCGCTGTTGCCTTGCGGCATCAGGCGAAATGCGCTGACCGCCTCGGCCAGCAGCGAGGCTTGCGACTGTAACGACAACGCGGCAGATGCCGC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //