Array 1 391253-392068 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTA01000001.1 Phocoenobacter uteri strain NCTC12872, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 391253 36 100.0 34 .................................... GATAACCAAGTAGGAATCTACGCAAATAGATTTC 391323 36 100.0 35 .................................... CATGACGATTTTCTGTTATTGCAACTTTATCTCCT 391394 36 100.0 33 .................................... GCGTACAATGGCTGCACGCCGTTCACTTTCAAT 391463 36 100.0 36 .................................... AATTCCAGATTCTTTTAGGATACGACCTACGTTTTC 391535 36 100.0 34 .................................... TTGGGTTCCTGATAAAATGTCTTTTATTATTTAA 391605 36 100.0 36 .................................... ATTTTTTGGTCACTGGTTAAGTAACCTTCATTATCA 391677 36 100.0 36 .................................... CATTTCATCTAACGGTTTATCTTTCATCACACTAAG 391749 36 100.0 35 .................................... TTAATTTGTTCGGACCGCATTTGCGATGATGTGAT 391820 36 100.0 36 .................................... ACATCATCAAGCTCTGTTGCTAATTTAAGTGCTTTT 391892 36 100.0 33 .................................... GAATCTTTTTGAGCCTGGTTTAGTTCATGTTGA 391961 36 100.0 36 .................................... AAGGATACATTTCTCAAACCTTTGTTTTTTGGTTGG 392033 36 91.7 0 ................................CT.A | ========== ====== ====== ====== ==================================== ==================================== ================== 12 36 99.3 35 GTAGAAATACACGCCCTGTTTCAAAGGGATTAAGAC # Left flank : TATTTAAAAATTTATAGTTATATAAAAAATGATGATGCAATGGAAGCACGTCTTATTCCTAAACCTAAGGATAAGAATTCTGAGCCACCACCTAATGATTTGATTAAAGTTTTATCTGAATCACGAGAGGATATTCGGAGAAAATTAATAAATACATTCTCTATGTCAAAAAATGCAAAAAGCCCTTATTTACCTTCATCTTCAATGGGGGTTTGGGATTTGTTTATTGATTTAGAAAATATAGATATTTCACAAATCAAACATCGATTATCAGAGATAGGGATTTCCTTATAACACGTTATATTACCTATTTTTAGCCTAGGAATTTTTGCTAAAAATAGGTAAAATATGACCGCTTTCTATTGCAGGGATAATAAATTTAAAATGAGAATCTTTGTTTATTTATTGAACAAACAAATGGTTAAGTCTGCGATGTATTCAAAAAGTTGGAAACTCTGTTTTGAAACCCTTGCGGCACAAGGCTTTGAGGTGCCCCCGCA # Right flank : AGAGGGATTAAAAGGATAGAATACAGCTATTTTGGTATGTTTATAATCTAGAAATATAATTTTTCTTTTTATTTATCATGATTGAATAACCTCTTATCCAATTTTATTCCCTCAATAATACAAATTTGTAATTTACTCCACTAAATCTAATTTTCTTTATACTTTTTTATATCAAAACAACGAAGAAAAATTGAGTATTTTCCAGTTTGTTAATTCTTACAAATTTGCAAAAAAATCTGACTGCTTTGTATAACGATATACTTATTACATCAACAGATAGGAGTAAACAATGAACATAGACATTTTAAATAAATTAGAAGGTAAAGATTTGGTGATTAGTATTGGTATTTTAGCAATTGTTACTTTAATTAAAGTGGCTTATTCGGAAGAGAATACAAATTTGTGAAAACCGATCTAACTCAATGATTTTCAGTATTATCTTAGAACAAAATAAATAGGGATAGATGTATGTTTGAAAAAATTTTAGTAATTGTGGCAAC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATACACGCCCTGTTTCAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 395796-396608 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTA01000001.1 Phocoenobacter uteri strain NCTC12872, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 395796 36 100.0 35 .................................... AAGTGAATGTTGAAGTTTTAAACATTTTCATTTTA 395867 36 100.0 34 .................................... CTGCCCAAATTGTTGGGGATATGGCAATAAAACT 395937 36 100.0 34 .................................... TTTTATGATCGTCTTGGTTTCTGATAGGTAATTC 396007 36 100.0 36 .................................... GTTATAAACCAAACGCCCCAAGCCTTTTCTTAATCG 396079 36 100.0 35 .................................... ATAATTTTGGTTAAAAGTTCTTTTGTCATCACCAC 396150 36 100.0 34 .................................... CCATTTATGCAACTAACTACACCAAACAGAAGAA 396220 36 100.0 36 .................................... TTTATATTTTTTGTTATACTTATAACCAGGTACTTC 396292 36 100.0 35 .................................... AAACCTAACGCTTCAATAGCGTTGTATTCATTGAA 396363 36 100.0 34 .................................... TAAGTTCATTTACCCAACCTTTAAGCTCTAAATA 396433 36 100.0 33 .................................... TTTAAATTAAGGTTGTATTCATTCTGATTTTCT 396502 36 100.0 35 .................................... ATATCGCCTAATCGCTTTTTTCTTAACTCAACCAA 396573 36 88.9 0 .............................C.A.A.T | ========== ====== ====== ====== ==================================== ==================================== ================== 12 36 99.1 35 GTAGAAATACACGCCCTGTTTTAAAGGGATTGAGAC # Left flank : AATGATCCAAGATATTGAGTTTTATTTTTAATGTTATGAGACAAAATGAAAAAATATTTAATTGGTTATGATATTTCCAATGAAAAACGTTTACAGCGAATTTATCGGAAAATGTTAAAATATGCGACCCCAATACAATACAGTGTTTTTATTTTTGAAGGATCGGATACCCACTTACAAAAGTGTATTAACGATATTTTAATAATTCTTCACGAAAAAGAAGATGATCTACGTATTTACCCTTTACCAATGCGAGGATTGCAATGGCAAATTGGTAAACCAACATTTCCTGAGGGAATTATTTGGACGGGCTTACCGAGTGGATTTATTGGTTAATTTTAGGTAAAATATGACCGCTTTCTACTGTCGGAAGGGGAACTATAAATGAGAAGTTTTGTTTGTTTATTGAACAAGTTAATGGTTAAGTCTGCGATGTATTCAAAAAGTTGGAAACGCTATTTTGAAACTCTTGCTGCACAAGGCTTTGAGGTACCCCCACA # Right flank : TTTATCGTAAAGATAGGACATAATCTATCTTTACTGTAATTATTCATCGCAAACCATTTTTTAATGCCAACAATAAAAATCTAGGTTACAATTAGCTCTATCAATATGAATTAAACCAAATGTGAGTAAGGGCATTAGAATGGCGAGAAAACCACAGCAAGATTTTGAAACAACGTTGAAGCAACTTGAAGAGATTGTCACAAATTTAGAAAGCGGAGATTTACCGTTAGAAGAAGCATTAAATGAATTTGAAACTGCCGTAAAGCTAGTTAAAAAAGGGCAAGACCATTTGCAAAAAGCGGAGCAACGTATTCAAATTTTACTTCAAAAAGATGAACACGCCGAACTATCAGATTATCAATAAAACGGATTTTCAATGCAATATTCTTTATCTCTCGATTTAGTTGAAAAACAACAACGTGTGAATGGCTTTTTAACTGAGCAGTTACAAGGCTATAAAAATGCCAATTCACCTCTTTTTGACGCAATGAATTATGCGG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATACACGCCCTGTTTTAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 1767316-1765168 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTA01000001.1 Phocoenobacter uteri strain NCTC12872, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1767315 36 100.0 30 .................................... CACCACCACCGGAGAAGATAGCGAACCACA 1767249 36 100.0 30 .................................... GCCGAGCCTGTGGTGGCAATGGCTTCTATT 1767183 36 100.0 30 .................................... GCCTAATTTCCCTAATGTATCATCAATCGC 1767117 36 100.0 30 .................................... CGTAGCTGGTGCTGAAGGAACATCTGATTT 1767051 36 100.0 30 .................................... ATAAACCTTGATCCAAAAGGTGGCAGTAAG 1766985 36 100.0 30 .................................... CGCCACTTTGGTCGATATGCTCAATGATTT 1766919 36 100.0 30 .................................... CAAAAGCTATTGCTGATGCTCTTGGAAATA 1766853 36 100.0 30 .................................... ATATCAAAGGTATTATTGTTATTTGGTTCA 1766787 36 100.0 30 .................................... CCAAACAAACGCCAACAAAACCGAAGTTAC 1766721 36 100.0 30 .................................... AGGGAGATGGTGTAATGCTCAATTCACAAC 1766655 36 100.0 30 .................................... ATCTCAGATAAAAATAACGCCTTATTCAAA 1766589 36 100.0 30 .................................... CCATCAACATTTGCATAAACAGGGTGATCA 1766523 36 100.0 30 .................................... CTCGAATATTAACATAATCTATGATCACAT 1766457 36 100.0 30 .................................... TTACATTATGACAGCGTGCTAAACCGTACG 1766391 36 100.0 30 .................................... TGGGACGATTGAGGGAAGACATATTCGAGC 1766325 36 100.0 30 .................................... TGTACCTAACCACGCAGGGATTTATATTGG 1766259 36 100.0 30 .................................... TAAAGCCATTTGGTATCCCTTTTAGTGTTT 1766193 36 100.0 30 .................................... TCAAAATTACAACAATCGGAAATAGAGAAA 1766127 36 100.0 30 .................................... TGTGGGTAAAACCAAAGCACTGCAACAATA 1766061 36 100.0 30 .................................... TGATTGATAATGTAGGATGAGTGATCGAAT 1765995 36 100.0 30 .................................... CATTGGGTCATCGGATAGATGTAGTTTAGT 1765929 36 100.0 30 .................................... TGCACTGCACGTATCCTGCAAGGTATCGAA 1765863 36 100.0 30 .................................... GCTTCCAGTAATACTACGACTAAACCAGAA 1765797 36 100.0 30 .................................... GCATTTAAGAAGCCTAAGAAAAGCAAAACC 1765731 36 100.0 30 .................................... CCTACTTTCCCCAAAGAGCAGATGAAATAC 1765665 36 100.0 30 .................................... GAAATGCGCTCTCTATAGCGGTTTGCTTTC 1765599 36 100.0 30 .................................... TTGTAACCGTGAACGAACTCTTTAAGCCCT 1765533 36 100.0 30 .................................... TGTAAACCACAAAATACGGCTAAAAACTTT 1765467 36 100.0 30 .................................... AAAATTCTGCTGAAATCGTATCAATGGCTT 1765401 36 100.0 30 .................................... CCTTTAGGCCCTTCTTCGCCATGTGATATC 1765335 36 100.0 30 .................................... TATAAAACATAGCAAAAACATAGCATTTTC 1765269 36 100.0 30 .................................... TCATCTCTTGTCTCTTCAAATGATAATTGT 1765203 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 33 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCTATGCTACAAT # Left flank : GATAACTAAACCATCGCCAAGATTCCACTCTTTCGCTGTTGGCTCTTCTGAGGGATGATAAACCAAATGTTTTGCCCAGTTATTATCGCCAAAATCTTCATTCCTTGCGATAAACATACTGTGATTATTACTGGCAGATTTACCAACGATAAGAGCAGAGCAGGCTTCTGCGGAAGAGTTAAGAGCACCGATCAAAGAAAGTGAAATTAAATAGGATAATTTATTGATTTTCATAGATGAATCTCCCTTTATAATTTAAGTAAATTAAAAATTTTTTAGCACTAAAATTGGAATACACATTGATTTAAGCATGTATTTTCTGAAACTATTATGAAGAGTGTGATTATTTTATTGGAACGATATGTTTAGTTTAAAATATATACTATGCACAATAATATAAAGAAGCATAAAATACAATATTTATACTTGAATTTTTACAAGAGCTACGTTTTATTTCGCTATGCTACAATCTAGAGAGATAAGCGGATAGAATTGTGTTG # Right flank : ATTATCGTGTTAAAACCTTTTAAAACAATGTGTTAATACGATTTTGATTCATAAAAAACACGAGTAAATCACTATTTATTCGTGTTTTTTTATGATTTTTTCTGATAAAAACTTTAATATTTAGCGATTAAAAAAACGTAAAAATAGTATTTTTGTAACGACAGCTGTTTAAAATAAAAGCATTTGATTCGCGTTTACCCTTTTTTCTTGAATTTTTAATTCTCCTAATAATAATTGCATACTTGCAAATTGTTTTTCTGTTACCTCTAAGCAACGAATAGAGCCTTCTTCAGGTAAGTTTTGACATAATCTTTTGTGATGTTTAATTAACGAATCTCTTCCTCTAACAATTCGAGAATAGACCGATAGTTGTAACATTTGATAGCCATCTTTTAACAAAAACTGACGAAATTGATTAGCAGCTCGGCGTTTCGATTTTGTGGTGACGGGTAAATCAAAAAAAACAATTATTCGCATAAATTTTGCCTCACTCATAATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCTATGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA //