Array 1 47520-45109 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTN01000010.1 Bifidobacterium scardovii JCM 12489 = DSM 13734 contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 47519 29 100.0 32 ............................. CGCGCGACGCATGGATCAGCGGCCGCCTGCCC 47458 29 100.0 32 ............................. GACACGAAGCAGCCGAACTACCGAAGGCATTG 47397 29 100.0 32 ............................. CATGGCGTGCCGGACAGGGAGATCATGGCGTC 47336 29 100.0 32 ............................. GGACCGTGGCGCACCGACTACGAGGCTATGGC 47275 29 100.0 32 ............................. ACCTTCTGCATATCCGCAAGAAGCTCTTTGTG 47214 29 100.0 33 ............................. CATTTCTTTTCATACCTGAGATGAATCCCGGTG 47152 29 100.0 32 ............................. AATTTTTGACAACTGCCGCGGACGGCAAGCAA 47091 29 100.0 32 ............................. AATTTTTGACAACTGCCGCGGACGGCAAGCAA 47030 29 100.0 32 ............................. AAACGTGTCCTTCCCATCTCGTCGGCCATCTG 46969 29 100.0 33 ............................. CATTTCTTTTCATACCTGAGATGAATCCCGGTG 46907 29 100.0 32 ............................. AATTTTTGACAACTGCCGCGGACGGCAAGCAA 46846 29 100.0 32 ............................. ACCTTCTGCATATCCGCAAGAAGCTCTTTGTG 46785 29 100.0 33 ............................. CATTTCTTTTCATACCTGAGATGAATCCCGGTG 46723 29 100.0 32 ............................. AATTTTTGACAACTGCCGCGGACGGCAAGCAA 46662 29 100.0 32 ............................. AATTTTTGACAACTGCCGCGGACGGCAAGCAA 46601 29 100.0 32 ............................. AAACGTGTCCTTCCCATCTCGTCGGCCATCTG 46540 29 100.0 32 ............................. TGGGTATCCGCCGCATCTCCAACAGGGAGCTC 46479 29 100.0 32 ............................. CATGCTCGCCCAAATCGCCACATCCCAGGAAC 46418 29 100.0 32 ............................. TCGCTGGGCTGGTATCCGGTGAGGGTGGCGAA 46357 29 100.0 32 ............................. CCCCTATGCCGGGTATGTGCGTTGCCTGACTC 46296 29 100.0 32 ............................. GCGTCGAGAAGCCATGTCGTAGGACTGGTGGG 46235 29 100.0 32 ............................. AGGATGCGTGCCCATCGCCATCGTATCCTCCT 46174 29 100.0 32 ............................. GATAAGGCCCTATGGCGAGTTTACGACGGCAT 46113 29 100.0 32 ............................. TGTTGGGCTTGAGCACGAAGTTCTCATTGAGA 46052 29 100.0 32 ............................. GCATCAGATGGGCCCAAGGCAAAGCCGACCGG 45991 29 100.0 32 ............................. AACATGGCGGCCAACAGCATCACATCCGACAA 45930 29 100.0 32 ............................. CTCCGTCCCAACGTGACGTTCGGAGCGGTGCA 45869 29 100.0 32 ............................. ATCGTGTCCGCCGCGATCATCGCGGACAAGCT 45808 29 100.0 32 ............................. CTCGAAATGGATTTCCCCGTCGAACCCGGTAT 45747 29 100.0 32 ............................. ACGCCCAGAGTGGGGAAATCCACGACGAATTC 45686 29 100.0 32 ............................. TTGTTGATCGTGCCGGCGATGTTCTCCACGCC 45625 29 100.0 32 ............................. CGAGGGAACGGGTGAGATCGCATATGCCGGTG 45564 29 100.0 32 ............................. CGAGGGAACGGGTGAGATCGCATATGCCGGTG 45503 29 100.0 32 ............................. CGAGGGAACGGGTGAGATCGCATATGCCGGTG 45442 29 100.0 32 ............................. CGAGGGAACGGGTGAGATCGCATATGCCGGTG 45381 29 100.0 32 ............................. CGAGGGAACGGGTGAGATCGCATATGCCGGTG 45320 29 96.6 32 ............................T GCCTCCCGATTCGGTGACTCCCAACCGGTCCG 45259 29 100.0 32 ............................. TACTTGGATGCAGTGAAATTGGGCGAGGCTGG 45198 29 100.0 32 ............................. TCGGACGGCGGCGTGTCGATGAAGGACAGCAT 45137 29 96.6 0 .......T..................... | ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.8 32 GTTGGCCCCGCACGCGCGGGGATGATCCG # Left flank : CGGTTCGTGAGGATTTTCGTGCGATGCGGAATGAGGAATCATCGTGATCGTCGTGGTATTGACGGTTTCTCCTCCTAAGCTGCGCGGTCATCTCACTCGATGGTTGTTTGAGATCTCCCCGGGCGTATATGTGGGAAAGGTCTCTTCCCGTGTTCGAGAATTGCTTTGGGATCAGATTCTTGACAACATAGGAGAAGGGCGGGCCATCATGGTCTATTCCTCCAATAATGAGCAAGGATTGGAATTTCGGACACACGGGCAGGAATGGCAGCCTGTGGATTATGAGGGCCTAGAACTGATCATGCGACCGAATACCAGCCAGAAGCAGCAACGTAATGGTGCCAAGAAGACTGGCTGGAGTCGGGCTTCTCGCTATCGTCGGTACGGAAGATAAACTGATTACAGCGAAAAAATAAGAAATACAAGGATGCGGGATGGTGACTGTGGCAATCCAATTTTTTCGGTATTTCATTCCGCGGTTTTCCGCATAAAATAACACT # Right flank : TGCGTTGAAACGCGCCGGGATCGACAAGAGCAGCTGGCCCCGTGTGCGGGGATGATACGAATTGGGAGAAATTCCCTGAATAATTTCTATCCTCCGTTGGTCCTGCGCGTGGGAGATGATCTACACAATGGCGTTATGTGCCTGTTGGCTCTGCCCTCGCGAGAATGACCTAGACCGTGATGGTCGAGTGGCTCTCAGCGTGTTGTTATTAGCTCCGTGTATACGAGGATGGCTTGTGTAACGGTGTGTGCGTGGCTGTTATCGTTCCGAGCTTGCTATCAAAAAACATTAATATACCGAATCCCGAAACACTCTGTTCCATATCGCGCGACGCGCCAAGCCACGATTAACGCAGCTGTTCCCAGCGTCTTGGTAATGTGTGTCTCGTGAATCAAACGGCATCTGATAACGCTGAAGAGTTCGGGTTCCACACCGGGGACATCGTCCAGGAGTGGTTGTGGGACGACGACGTGGATGACTCCATCCGCGCCAAGATCGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGCCCCGCACGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGGCCCCGCACGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 63508-61088 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTN01000010.1 Bifidobacterium scardovii JCM 12489 = DSM 13734 contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================= ================== 63507 29 100.0 32 ............................. AGGACAAATACTCGCTTCTTGCCGCAGAGATA 63446 29 100.0 32 ............................. CCACGGCAATCGAACTCGGCAACGGCGAAGGA 63385 29 100.0 32 ............................. GACGTGGACGACCTCGTTGCCTCTGGGCTGCT 63324 29 100.0 32 ............................. CCCTCAAACGTGGACGGCCTCGGCCAGGCCTA 63263 29 100.0 32 ............................. TGGCGGCAGATCGTGTATCCGGCCATCCTGGA 63202 29 100.0 32 ............................. CTCGTGCACCGCAAGGGATACGAGGTCAAACC 63141 29 100.0 32 ............................. ACCCGCGGCCTGCTCGAGGCCATCGCCACCAA 63080 29 100.0 32 ............................. GTAGCCGTCCGGTGAAGTGAGGGGAACCCGGA 63019 29 100.0 32 ............................. GCCTCTTCTACCGTGGCGCGGTCAACGACCTG 62958 29 100.0 32 ............................. TCACGCACCTGGTTGGCGCTGACGGATTCGAT 62897 29 100.0 32 ............................. AAGGCGATCGTGGCGATGGCCAGGGATATGGC 62836 29 100.0 32 ............................. AAGCCGTTGCCCTCTGAGCTTATCGGCGTGCT 62775 29 100.0 32 ............................. AACGACACATAGGTTTTGCGGTAGCCGCGCCG 62714 29 100.0 51 ............................. AGCGCCCGCACATGGAGCGGGGACGCGTGGCGCATCACCCGTCGCGGCTCG 62634 29 100.0 32 ............................. GAGACGCGTTCATGAGTGGCCGTCTCGCGTTG 62573 29 100.0 32 ............................. AGTACATCGCGCGGTTCGCCGAATGAGAGGAG 62512 29 96.6 32 ............................T GCCAGGTCACCGTGCACACCGCCTACCCGCCC 62451 29 100.0 32 ............................. CCCATGTTGCGCAGTACGCCGGCAGCGTCCCG 62390 29 100.0 32 ............................. CTCAAGGGCAATGCTCTGGACATGTGGGACAG 62329 29 100.0 32 ............................. GCGTGGCGGTGGTTGTCCCGGGTGATGATCCA 62268 29 100.0 32 ............................. CGCCGGCGATGTTCTTGCGATACTCGACGCGG 62207 29 100.0 32 ............................. CACTTGCGATCCCGGCAGGTGGAACGCGCGTT 62146 29 100.0 32 ............................. CGTTGACGTTGCAGCTCGCGGTGATCTCGCCC 62085 29 100.0 32 ............................. TGTACGACTGCTGGGCCTGCGCCGTTGCGGCA 62024 29 100.0 32 ............................. ATCTTCTTGGCGATGCCGTTGGCGACCATGAC 61963 29 100.0 32 ............................. GTCACGGACAAGATGTTGGACTCCGGGTATCC 61902 29 100.0 32 ............................. CTGACGCCGGTTGAACAGGTGACCGGCACCCG 61841 29 100.0 32 ............................. GCCGAAACCCTCCAGCAGGTCCTCGCCAACGC 61780 29 96.6 32 ......................C...... ACGGGGTTGCAGGCGATGAAGGCGGAGATCAA 61719 29 96.6 32 .........A................... TTCAAATACGTCCCACTGTTCGGCTGGTGCGT 61658 29 100.0 32 ............................. CAGCTCAACGCCGCGCTCACCTCGCTCAGGGC 61597 29 100.0 32 ............................. GCTGCGTGCCGCCGGCAAACCGTTGCATCCCG 61536 29 100.0 32 ............................. ACAATGGACGGAAGAGGAGAAATACTCACGAC 61475 29 100.0 32 ............................. GACGCCGCAGTCAACGACGAGGCCACGCCGGA 61414 29 96.6 32 ............................T GACAATGGTCTGATCGGCAGCCTGTTTACCGG 61353 29 96.6 32 ............................T TCGCAGTTCTTCACCAGACGCATCTCGTCGGC 61292 29 100.0 32 ............................. TTTGGCGTGGACAAGGATCACGCGAGCCTAGC 61231 29 82.8 87 A...G.......C...A...........T GCATGATCCCGGTCTGTCTCACCCCAGCAGACGTTTACTCTGCACGCGCGATAACCCGTTTGCGGTCGCCTTCACGTTCGTGACTAT A [61208] 61114 27 82.8 0 .......T...--.....A.........A | ========== ====== ====== ====== ============================= ======================================================================================= ================== 39 29 98.7 34 GTTTACCCCGCATGCGCGGGGATGATCCG # Left flank : GCCGACCGCATCTCGCTGGTGCTGACCGTGCCGGCTGATGACGTGGCCAAGGTCGAGCAGTTCCGCGATCTGATCGCCCACGAGACGCTGGCGACTTCCTTTGAGGTGAAGGAAGGCGCCGAGCTCGGTGTGGAGGTTGTTAAGGCGTGATGCTGTAACGTATTTAGTGCTCGCAGGGATTTTGGATCAGTCCAAGGTCTCTGTGGGCACGCGCCATTTGTCTGCGGGCACGCGCCATTTGATGGTGCCAGCCCCTGCATTTGCGGGGATGATCCGTTAATGATGGCCTAAAGCTGATTATGCGACTAAACTCAAGTCAAAAGCAGAAGCGCAATGGAGTTTTGAAAACCAAGAAGAAGGCTGGCTGGAGTAATGCCTCTCGATATAGGCGTTTTGTCCGATGACCGGTAGCGAGGAACAATAGCACGAAGATTGGAGCCACTGTGCGAATCCAATTTTTGAAGGCCCAATGCCCAATAGTTTTCGCATAAAATCGGACT # Right flank : GACAGTTCCATGAGTATTAGCCATGCTCATGGGACATTTTATCCACTGTTTTCGCGATCTCAGCGTGCGTAGTATGCGTGCCAACGTCGAGTTGTCGGTGCAAGGGTGAGTAGTGAAACCGGTTGTCCACCGTTGTTAGCGGCGGAAAACGGCTATATATAGATCCGGTCTCGACGATCGCGCACCGACAACTCGGGTTTTCAGAGCATTCGACATGAGTTGTCAAACTTGTCGTTTCGTTTCCGGAAGATCTATACTCTCTTGCATCGGTGAAGAGTACCGGCGGCAATGGTGCCGTCCGATTCGCCGATCCTCAGTAGTTCGGAGGTATGCATGTCGAAAGACGCACAGACGCAACATACGCAATCGCAACCGCCGGCGCCGGCATCGTCCGGTGCCGGTTTGCAGAAAAGCCTCAAACTCATATTCGTCTACACGGTGGCCACCGGCTGCATGTTCACGTATGTGAGTTATTGGGATTCCGTGTTCTTCAGTTATTG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTACCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //