Array 1 7957-8595 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRUV01000197.1 Thermobifida halotolerans strain DSM 44931 contig197, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7957 29 100.0 32 ............................. ACCGCCCGCACCGGCCCCGGGGTCGGCGCCTA 8018 29 100.0 32 ............................. TCCGTGCTGGTGCTGACGTTGACGGTGACGAA 8079 29 100.0 32 ............................. ATGTAGGTGGCGCCCTTACCGCTGGCGACCAG 8140 29 100.0 32 ............................. GTGCGCGGCAAGATGAGCGACATCGCCGGAAC 8201 29 100.0 32 ............................. CCCACCACCGACACCCCCGACCGCGACACCGC 8262 29 100.0 32 ............................. CTTTGGCGAGCTTGAGGCGCTTGAACCGCTTG 8323 29 89.7 32 ............TG..............A GGATGGAACGCCACCATACGGGTCGCGGTCAC 8384 29 100.0 32 ............................. ATGTCCTTCGCCGCAGCCTCAGCAGTGCGCCG 8445 29 100.0 32 ............................. CGGACGGCTGGACGTGGGGACCCCGCAAGGAC 8506 29 100.0 32 ............................. CGCCACACGCCCGCCCGTATGAGGACATCACC 8567 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : GCCGGCGCCGAGGAGGAGCCGACGGGGTCGGGGGGTCCGTGGCGGGTCGTCGACCTGTGGGATCCGGTGGCCGGAGCCGTCGCCGGGGGCGTGAACTACGCGGACCGCGCCGCGGACGGCGAGGAGTCCTGATGGCCAGGCTCGTGGTGATCGCGACGACAGCCGTTCCCGACCACGTGCGGGGCGCGCTGTCCCGGTGGATGCTCGAACCGGTCGCGGGCGTGTACGTGGGCACGATGAGCGCCCGTGTCCGGGACGAGCTGTGGTCGGCGGTGAGCGCGTCGGTCGGCGACGGAGCCGCCGTGTGCGTCCATCCTGACGACAACGAGCAGGGCTTCAGCATGCGCACGGCGGGGGAACGCCGCCGGACAACCATCGATTTCGACGGACTCCAACTGGTCCGACTGTCAGCTCTGGAGGAGCCGGAACAGCAGATGCCACTGATCCCGGAGGGGTGGTAACGCGGAGATAACGTCCCACAAAAACGCAGGTCATCAACT # Right flank : GGACTACAGGAATGCGGGGCGACCCGGAGCCGGGTACGAGTCGGCGGGTCTGTTGGGCCGTTGAAGACGGTCAGGGCTGGCGGGACGGTGAATGCGGCCGGGGTCGTCAACGTTGGTGGGGGTCGCGGTCAGCCTCCGTGTGCCGTGATGGCGTAGCCCTCGGGGCCGGTGAAGGTGAACGTGCGACCGAAGGGACTGTCCCGCGGCGGGCTGATGATGGGCACCCCGGCGGTGGCGAGTCGGTCGTGCAGTTCCTGGGCGTCCGTGGTGCGGAACCACAGGGCCACCCCGAGGCCGGGCCGCGCGGCGCCGTCGAGGTCCACTCCGGGCAGCGGTTCGCGGACGGCGAACGGGATCGGCTCGGTGGCGAACACCACCGCGTCGGGAGGCGAGGCGGGCGCCCTCCGCAGTCCGAGGTGCTGTTCGCAGAAGGCGGCCGCTGCTTCGACATCGCGCACCTGGAGCGCGACGAAGTCAGGGCCGTCGACGGTGGCCGTCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 18008-18411 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRUV01000203.1 Thermobifida halotolerans strain DSM 44931 contig203, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 18008 37 100.0 35 ..................................... ATAGGGGTGGTTCCCCGGATATTTTGGGCAGAACT 18080 37 100.0 35 ..................................... TCTTGCTCAATGGTTATCCCTGCTCTGGTTTGTCC 18152 37 100.0 39 ..................................... CCCCATGATGGCGGCCGGGACGCCCCGGAAGGCGCCCCT 18228 37 100.0 34 ..................................... AGCCCAGCTGGACTGAGACCACTCCGAGGACGGC 18299 37 100.0 37 ..................................... GTGAAGAGCATCGCCTGGGTCATGTCCCTGGCCGCCA 18373 37 97.3 0 ..................................C.. | C,G [18404,18408] ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 99.5 36 GGTCCAAAGGACGTCAAAGCCCGAAGGGCATAGAAAC # Left flank : GGTGAACGCACGTGGGCCGCCATCCCCATCGCCGCCGCTTCTACCTGATCTGCTATGACATCGCCGACAACGAACGCCGCGACGACGTGTCCGAACTGCTGTCCGGCTACGGGCCGCGCGTGCAGTACAGCGTGTTCGAGGCGGCCGTGGAGACTCCGCACGTCTTCGACCAGCTTCAGCAGAGACTCACCGACCTCGTCGACCCCGACGAGGACCAGGTGCGCATCTACCCGCTGCGAGTCACCGACCTTGACAAGATCACCATCATCGGCAACCGTCGCCTTGAGGAACGCGACGACTTCTGGATCATCTGAGGGGAGGTGTACACGATTTGGAGGAAAGCCCGTAGAACCCTGGTTTCTGCGCACCGTATCACCGCAGGTAACAGCCATAGAATCAAGAAAAGAGACCTGGATCACTTGCTCTTGGAAGTGCGGGGACTTGATCACGCGTAAACGGACATCGTCAGCGCAGGTCAGCCCGACCGAAAACCAGGCAGG # Right flank : CTGTCGGAAGTTCTCGATATCAGCCTGTTTTCCAGGACCGGTTTGTTCCGTCCGATAAATGAGGGCTGCCGTTAATCTCCAGGCGCTGTTGTCCGCTCGTGAGTCAGTACGCGGTACGCAGCCGTCGCGGTATGCCGCTGAAGCGGACTGTTCGCAGGCCGTGACAGTTCGGTAGTGCGTTCGAGGGCTGTCGCGGGGCGCCGTCCGAGGTGGCCGTCACCGGGAAGAACCGGCCCTGGGACGGTGGGGTCTGGGTGCGGCGTGCGCCGCCCCCGGGTCACAGGTCCAGGTCGATGTCGTCGGCGCTGGTGGCCGCGTTGCGTTCGGGGTCGGTGAGTTCGGTGGCGGTGAGGGTCAGCGTGTAGTGGCGGCGCGGGTCGAAGTCGGGGAACTCGTCGACGCGGTCGAGGATGTCGGCGACGAGTTTGCGCAGGAACAGCCGGGGCGCCACACCCACCTTGCCGCCGAGGCCGCCGGTGACGGCGGTGGCGAGTTCCGCG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCCAAAGGACGTCAAAGCCCGAAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 25338-26098 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRUV01000212.1 Thermobifida halotolerans strain DSM 44931 contig212, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25338 29 100.0 32 ............................. GCGATCACCGAGGGCGGGGGCGGAATCCTGTC 25399 29 96.6 32 ............................T CGAGGATTGTGGATACTCCGCGGAGCGGTCGC 25460 29 100.0 32 ............................. GGGGTGGGGCGGCGAAACACCGGGAACACCAG 25521 29 100.0 32 ............................. TACGACCAGTCCGACCACGGGCCCTCCTCGCC 25582 29 100.0 32 ............................. CCGAAACCCTCATCACCCACCTCACCGCCGAA 25643 29 100.0 32 ............................. ACCGTCCTGGCCCTCGACCTGGCTCGGCACGC 25704 29 100.0 32 ............................. GACACCGCCGAGTGGACCGACCGGGGCACCGG 25765 29 100.0 32 ............................. CGCGCCTGGCCGACGCTGACAGCCGCATCGCC 25826 29 96.6 32 ............................T TCAGCTTCCTGCTGACTGTGCCGATCGAGATC 25887 29 100.0 32 ............................. TCCCGACCAACGCCAGCACGGTGTGCTGGTCG 25948 29 100.0 32 ............................. ATGCCGTCCGTGACCTCCCTCAGTTCCCGCCC 26009 29 96.6 32 ............................T CGTTTCCAAATGGTGGCGGTCGGGGCGCAACC 26070 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 CCGAGCCCCACGCACGTGGGGATGGACCG # Left flank : TACTCGGGGCGGGGAATGGACGGAGGGACCGTGCGTTTGGGCGAGAGACGCCCGGGAACCAGCGGGGTAGTCATAGAACACGAGTGTAGTCAGCCGCAGATGGGAGGCGTCCGTGAGCGGAGCCCTGGGACGGGACATCCTTCCCGAACCCGAGAACGGGCCGGGACAGTGGTGGTACTCCCTGAAGACCAAGCAGGTGGAGTACGGTCCTGGCAGTCCCGGCAAGGACCGGATGGGCCCCTACCCTGACCGGGCCTCGGCGGAGGCCGCGATGGAGAGGGCGAGGGAGCGCACCGAGCGGTGGGACGAGGAGGACCGCGAGTGGAACGACTGGTGAGAGCGCCCTGAGTGCATCGCCCGGGTACGTGCGGAACGTAGTGGGCGAACCGCCGTGAACAGGGCGCTTCCGTGGAACGGTCTAGAGTGGTCCTGCGGGTGGGAGCTGCTCGCGGGGCGGATAACGCGGAGATAACGAGCCGCAGAACCGCAGGTCAACTTCT # Right flank : GGGGTTGGTGGTGCCGCTGAACAGGAGCCTGCGGAGTCCCGGGGGTGGCCGGTGCGCTTCCAACGAATCCCCCTGTGGAGGCGCAGGAGTGGGGCGGCGTCCCCACAGGCGGAAAAGGCAGAAGGACGTCGGCCGCCACCGGGAGGGCGCTCCCGTCACCGACCTAGCGGGGGGTCGGAACAGGGCTGAGGCCCCCTCGGGTGCCATGATCATGGTTATGACACAACAGAGTTCTCCGCACGACCTGCCCGACGTGTCCGGACTGTCCGTCGCCGTGCTCGGCGGCACCGGCGACCAGGGCCGCGGCCTGGCCCGGCGGCTCGCGATGGCCGGACACGAGGTCATCCTCGGGTCCCGCAGCGCCGAACGGGCGCAGGCCGCGGCCGACGAACTCGGCGCGGACCTGCCGGTCCGCGGACTGGACAACGCGGCCGCGGCGGCCGCCGGGGACGTGGTCGTCGTCGCGGTTCCCTGGGACGGCCACCGCGCCCTGCTCGAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : CCGAGCCCCACGCACGTGGGGATGGACCT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 18835-18379 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRUV01000243.1 Thermobifida halotolerans strain DSM 44931 contig243, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18834 29 100.0 32 ............................. CCCAGGTAGTGGGGCGGCAGCCCGGTCAACCC 18773 29 100.0 32 ............................. CCCAACTCCGGCAAGCCGCCGTGGAGCAAGGC 18712 29 100.0 32 ............................. ATTCACTGCCGCTCGTCAGGCAGATCCTGGAA 18651 29 100.0 32 ............................. CCGATCATCCCGATCGAGGACCGCACGGTCGA 18590 29 96.6 32 ............................G GCGGGGTACGGTCCGAAGCCGGACGTGACCGT 18529 29 96.6 32 ............C................ TACGACAACGCGCACACCCCACCCACCGGGTG 18468 29 100.0 32 ............................. CCGAGAGGCTCGCGGACTCCGATCGAGGAGGC 18407 29 89.7 0 ............C.............T.G | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.9 32 GTGCTCCCCGCGTATGCGGGGATGGTCCC # Left flank : GACACCACATCGGGTAGCCAAGCGTGTGGAGCAGGTCGGACTGATTCGTGTGGTGGTGGCGAGGGCGGTCCGACGCACAGCGATCGGCCACTGGAAGGCGACGACACAGGTCCGCGGGGGTAAGCGAGAGCGCCGACGCGGGAGCTGTCCTGGCGCGTTCTGAGGCCGCCGTCAGTGCGATGCGTTCTCGACGGCCCGTTGTCGTCACCCAATGTCGTGATGGCCGCCAGTGGGGACCACAAGTGGCCGCCCACGGGGAGCGACAACCGGCCGTACTCGCAGAATTCCTGGTGGCCGCTGACATTGGAGGTTCGGGGGAGGGCGGGGTATTCCACCCCACCACGGGGGGGCTGGGGTGGAATGCCTCCGGCCCGGGACCGGTACGCGGCCTCCGTACATCCGGCGCCTCACGAGACCCCCACCTGGCGGGTGTTATGTCCGATTTTCGGGAAGTGAAGGAAACCGGCCCGTGTCCCTGATAAAGTCCCAGGTCGTTAAGC # Right flank : AGACGCGGCCCCTGACGCTTCTCTGTCGAGCGGTGGACTGTGGTGGTCGGCTCCGGGGCATCCTTCCACGCGCGCTTTCCGGTCCCTCTCCAGCCCGAGGAGAGGACAGGGCTGCCGGGCCTCCCGGCCACTACCCGTTGATTTTTTCCACCCCCAGACGAACAGTCTGAGCAGGGCGGACGCAAAACCGGGCTAGTGGCTCCCAAGGGGAAGGCTCACCGCCCATGCCTACCGCCGTTCTGTACCTTCGCTTGTCCCAAGAGACCGAAGTGTCCGACGGGCTCGACCGTCAAGACCGTGACTGTCGCGAGCGCGCCAAGCAGCTCGGCGCGACAGACGTTGTCGTGTTCCGCGAGACCGTGAGCGGATACAAGCGGACCGCGAAGCGTAAAGCGTTCGACGCCATGACCTCCTACGTTCGGGAGCACCGCCCGGAATTCCTTATCGCGTGGAAATTCGACCGCTATAGCCGTAAGGGCATTCGCGACGTTGCTGCGGTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTATGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19583-19432 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRUV01000243.1 Thermobifida halotolerans strain DSM 44931 contig243, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 19582 28 100.0 33 ............................ CGCAGCGATGACCAACTCCAGGAGGCGCGGGTC 19521 28 100.0 34 ............................ CCGCCACCTGGACCACGTCGCCCCGCCCCCGCCC 19459 28 92.9 0 ..........................TT | ========== ====== ====== ====== ============================ ================================== ================== 3 28 97.6 34 GTGCTCCCCGCGCATGCGGGGATGGTCC # Left flank : CGCATGCGGGGATGGTCCCTTCCCGGTTTCCTCATTCATCCGCGTCGCGT # Right flank : CGCGGCGCTGAGGCGGTGCGGGTTCTTCTTGGAAGTGTTAGTGGCCAGTTGAGATTCCCCGGAGGCGGCCAGTTGCTGGGGAGCTATCTGGCCATCCGACACCACATCGGGTAGCCAAGCGTGTGGAGCAGGTCGGACTGATTCGTGTGGTGGTGGCGAGGGCGGTCCGACGCACAGCGATCGGCCACTGGAAGGCGACGACACAGGTCCGCGGGGGTAAGCGAGAGCGCCGACGCGGGAGCTGTCCTGGCGCGTTCTGAGGCCGCCGTCAGTGCGATGCGTTCTCGACGGCCCGTTGTCGTCACCCAATGTCGTGATGGCCGCCAGTGGGGACCACAAGTGGCCGCCCACGGGGAGCGACAACCGGCCGTACTCGCAGAATTCCTGGTGGCCGCTGACATTGGAGGTTCGGGGGAGGGCGGGGTATTCCACCCCACCACGGGGGGGCTGGGGTGGAATGCCTCCGGCCCGGGACCGGTACGCGGCCTCCGTACATCCGG # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.10,-12.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 36750-36931 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRUV01000285.1 Thermobifida halotolerans strain DSM 44931 contig285, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 36750 37 100.0 35 ..................................... TACGACGGGGAAACCCCGGCCACCGAGGGGCTGCC 36822 37 97.3 36 ......A.............................. AACAACATCGCCGACTTCCTGCCCATCGAGATCGAG 36895 37 89.2 0 C..........TT......A................. | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 95.5 36 GTGGCAGCCGCCCTCCGGGGCGGCTGAGGATCGCAAC # Left flank : GGTGGGCCACCAGGGGATCGAACCCTGAACCCGCGGATTAAAAGACCCCTCGACGGCGAGGGAAGAGGCGTTGCGGGGATGGGGCGGAAACCCCGGTGGAGTAAGGGATGCCGGTCATGCGGCGGGGTAGGCACTTCCGGCACTGCGGTACCGAGGCTGCGGTTCGGGGAGCCACCGAATGCCGGGCCGTGCCGCGCGGTGCCAGCGACGTACGGAACTTAAGAGCCAACACGGAGCGAACATGGTCCGCATTGGTCCGGGGGCTTTGTTTCCTGGGCCTTGAGAGCCGGTCTCAAGATCTGTGACAGAGGGTCGGAGTAGTATCCAGTCCGACACCTTCCCCCATAAGACAGCCTTGTTGATGCTGTAGTTCGGAACCTGAAGTGGTCATGGATCTACAGGGAGGTTCCCAAGGAGGTTCGTGCCTGCTTGGGAACTTTCACTCCTTTCTGAGTCGTGAGCATCGCCAAGCGATGTGGCGTTTGCGCACTTCAGGCGCC # Right flank : CATGAGCAGAGTGGGTGAGAGCTGGAAAGCGGGTTAGCTCTTGGCTGTCACTGGCGGGATCTGGCACGTTTTCTCAGCTCATACGGTGTGCAGTAGGCTGTCAGTCCCTCTGCCGCGGGCTTCGGCGGTGCCGCTCCTGGCCCCGCTTTCCCTCTCCGGTGCCGACGCTGTGGCAGCGTCCTGATCGCGGTCTGCCTGCGGTGCGGCTGCCCGCTGCCCGTCGGGTGTTCGCGGGGCCGCCTTCCCTGGTGGGCGTCCGTTTCTGGATGTTTGACCAGGGAGGTCTGTGATGGGGTTCGGTACTGCTCCGCTGCGGATGGCCGAGCGGGAGTTCCTGCGGCTGGTGCCCGATGTGCTGTGCGTGGACGGCGGCGGTTTCGACGGGCTGGAGGACCGCGGCTACGGACTGGTGGAAGTCCGCGACGTGCTGATGGCGCGCACCACCGAGCAGAGGCTGCGCGATGAGGTGTGGCGGCGGGTGATCCGCTCGGCCCGGGTCT # Questionable array : NO Score: 3.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGCCGCCCTCCGGGGCGGCTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGACGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1214-2401 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRUV01000282.1 Thermobifida halotolerans strain DSM 44931 contig282, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1214 29 96.6 32 ............................A CACCAGGTCACCCGGCGCATGCTGCCCCTTGG 1275 29 100.0 32 ............................. CCAGCTAGCAGCAAGCAGACGGCTTTTATCGT 1336 29 96.6 32 ............................T GCCTGCCATACGTAGCGGACCCCGGAGGCGAG 1397 29 100.0 32 ............................. ATCTCCGACTCTGTGGACTCTCGCCCCTGCCT 1458 29 100.0 32 ............................. GAATTGTTGTGGACATCCGTCCCAGCAGGGTG 1519 29 100.0 32 ............................. TCGGCGCCGGTCATGGTGACGTACCAGGCGAG 1580 29 100.0 32 ............................. GTGGCGGATCACTCGGTTGATGCGGCTCGGTG 1641 29 100.0 32 ............................. GGGTGACGGGTCGCCGCCAGGGTGGCGGGTCG 1702 29 100.0 32 ............................. ACGAAGCAGTTCCCTGTGATCGCGCTGGAGCT 1763 29 100.0 32 ............................. GCGGCTCGCCTTCCGGGGACGTGACCCGCCGC 1824 29 100.0 32 ............................. AACCCGCCCCACATGGAGTCCTTGTCGTAGAG 1885 29 100.0 32 ............................. GGGGCTAGGGCGCGGGCGGCCATGCTGGCGGA 1946 29 100.0 32 ............................. CCTTCAGGTTGTGCCGCTTGTGGTGGCGCGCG 2007 29 100.0 32 ............................. CCCGGCGACCATGTGACCACCGAGCGCCAACT 2068 29 100.0 32 ............................. TTTGACGACGGTTTCGCGTTCAAAGACTGGTC 2129 29 100.0 32 ............................. CTGTGCCAAACTGTGGGTTGCACTGTGTACCT 2190 29 100.0 32 ............................. AACCGCGGACACCTCCCACAAGCCCGCGACCG 2251 29 100.0 32 ............................. CGCGCCACGTCCACACCGATCGTCAGCGGTCC 2312 29 100.0 32 ............................. TCCGGCAGCCAGGTGCGCACGAGCTGGCCGTC 2373 29 96.6 0 ...............A............. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : CTACGAGTGGCTGCTCGCCTTCGAGGCCGAGCAATTGCACCGTATCGTCGACCTGATGCGTGAGTTGCGTGGTGCGGAGGCCCGTTGTCACACCCGTCTGGAGGTTCCGTTCTACACCGGTAGGCGCAAGAGCGTGGCGGAGTTGGTCGAGTCGCTGCCCTAGGGGTTGGTGTCGAAGTGGTCGGGTCCGTGTCGGTGTGGCGGTCGGGGTGATCGTGGTCGCTGTGGCGGGTCCCGGGAGGTTTGCTGGGTCGTGGTTGTCCCGGCCGTGTGACCGGTGTGGGTCTGACCGCTTTCGGTGCATGCTCCGGGGTGGGGATGTGTCGTGAGGTGGGGAGTGGTCAGGGGTTCGCGTTCGCTTCCTCGATCGGTCACGGCCGTCGCTCTGGTACGCACGGGGTGCTTGCGTGGAATTGGTCTAGAATGCTCCTGCGGTTGGAGTTTGCTCGCGGGGCGGATAACGCGGAGATAACGCCCCGCAAAACCGCAGGTCAGCTTCT # Right flank : GAGGCAGAGCAGACCAGCCTGGATTTCGACGCCTTCGAGGAGGAGACCGCTGATGAACGAGTACGCCCGGATCATCGAGGAGACCTGGCGCAGGGTACGGCCGGGCGAGATCGAGCAGATGTCCGACCCGGAGGCCTACCTGACCCGATTGGGGGAGGATGTCGAGGAGGAGATCACCGAACGGTGGCCCAGGCTGGCGGGCCCGGATCCGGAGCAGGAGACGCATCTGGAGAAGGTGGCGCGGCTGAACTGGGCACGCCAGCAGGCAGCCTCCCAGGTGGTGAGGGAGAAGCTGGAGGAACTGTTCGGCTCGGCAGTGGAAGAGGACTGGGAGAGCGAGGAGGACGAACCGGAGGCCGAGGAGAAGCTGACAGCACCGAGCAGCAGCCAGATGGAGGACAGCCGCGACTGGCTGGCCCGGGAGTTGGGGATGGGTCCCAGAGCCTGAGTAGGCCGCGGTTTCGCCCCACCGGACAGCACGCCTTGGCCCCCGAGGGGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 2 3494-3643 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRUV01000282.1 Thermobifida halotolerans strain DSM 44931 contig282, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3494 28 100.0 33 ............................ TTGTTCACCGCCTCCGGGTCCTCCGGGAGGAGG 3555 28 100.0 33 ............................ ATTCAGAGCTGCGCAGGGGAGGCGGGTGCCCCA 3616 28 92.9 0 ........................T..C | ========== ====== ====== ====== ============================ ================================= ================== 3 28 97.6 34 TGAGCCCCACGCACGTGGGGATGGACCG # Left flank : CTTGGCCCGCTGGTCGGGCTGGGGAGCAGTCCCCCAGGTCTTCGACCCCCGCAACGAGGAGTTCGTGGCCGAACGCGCCGAGCTGCGTTCCCTGCTGAGCGTGGCCGACTACGCGGCTGCGCGCCGCACCACCCTCAACGCCCACTACACCGACGCCTCACTGGTGCAGGCGATGTGGCAGGGCCTGCGCGAACTCGGCTTCGCGGGCGGCAACGTCTTGGAGCCGGGCTGCGGATCGGGCAACTTCATCGGGTTTGCTCCGCAAGACACCCCGGTGTCGGTGCACATGGTGGGGGTGGAGCTGGACGCCACCACCGAGGCCATCGCCTTCTACCTGTACCCCGACGCCCAGGTGCTGCACGAGTCCTTCGGAGACACCTTCATCCCCGAAGGGGAGTTCGACGCGGCCGTGGGCAACGTGCCCTTCGGCAACTACCGGATCTACGATCCGGAGTACAACCGTGAAGGCCTCAGCATCCACAACCACTTCATCAGCAAGG # Right flank : CTCGAGCCCCGGGAGTCCCTGGCTGTCAACAGCCGTGGAACTCCTGGTAGGACTGTTCTCACCACAAGACCGCGTCCACTGCGCCAGAGGCTTCACGGTGGTTCCCTGTTCTGCCGTGCTCGGCCACCTGGCCCGCCTGTTGGCCGCCCACCGCCGCACCATCGGTACTCCGCGCTGTTCCCAGGCACTGACTTCGTTCCGCCAGGCGGTCTTGGTCCTGCGCCACTTCCACGACGGCAGCCGCATCCACACTTCGGCCCGCGGCCACGCCGCCAATCCGGCCACCGCCTGTCGCTATGTGCGCGAAGGCATCCACGTGCTCGCCGCCCAGGTCCCGACTCGCACCAGGCCCTGGATGAGCTGCGCGAGCTGGGCGAGTTCCTGGTCGTTGTGGACGGCAGGGTCTTTGCCCCCACCCGGTGTGCGGAACAGAGTGAGCGCGGCGCGGACGGGCACTCGGCGCACAGGCACCGTCACGGTGCGGGCCTTCGACGCCGACG # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 4432-2512 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRUV01000290.1 Thermobifida halotolerans strain DSM 44931 contig290, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4431 29 96.6 32 ............................A TATGGACATCAGGCCGTGGACGGTCAGCTTCT 4370 29 96.6 32 ............................A TATGGACATCAGGCCGTGGACGGTCATCGGCT 4309 29 100.0 32 ............................. CCGTCTGCGCGCTCCCCGCCGGCCACGACACC 4248 29 100.0 32 ............................. GTTGCTCACCGGGTTGCTCGTTGTCCTGCTGT 4187 29 100.0 32 ............................. TACGCCAACCGACCCGGGTTGTCCCCGAGCGC 4126 29 100.0 32 ............................. GTCATGCAGACCGCCATGCAGCGAGCCGCCTA 4065 29 100.0 32 ............................. ATCGACGTCACCCTCACCACCGACGTGTACGG 4004 29 100.0 32 ............................. CGTGCGTCGAGTAGCGGCGGAAGTACGGGCCG 3943 29 96.6 32 ............................T CCGCGCGCGGACGGTGAGAGCCCGGCGAGCGC 3882 29 96.6 32 ............................T CCATGTATCGGCGATCTGAAACGGCGGCTCAC 3821 29 100.0 32 ............................. CCCCCATGATCATCGACGACTCCCCGGCCGTG 3760 29 100.0 32 ............................. ACCTGGTCGAGCCGGGCGACGAGGTCCCCACC 3699 29 100.0 32 ............................. TCCACGCAGCGGGCGTAGTGGAACTGGGCCTG 3638 29 100.0 32 ............................. GTTCGCCGGTCGCAGTATGCGGGCGGGGTTGT 3577 29 100.0 32 ............................. TCGGCGAGGCCGGGCATCTTGTCCTGGCGGCC 3516 29 100.0 32 ............................. TTGGTCTGGTCGTAGCACGCGGCCTTGATGAT 3455 29 100.0 32 ............................. TTCTGCCCGGACCCGTACTCCTCCCGCAGCGT 3394 29 100.0 32 ............................. GCAGCCCCTGGTAGGCGAATTCCTCGACGATC 3333 29 100.0 32 ............................. AGGATGGCGGGCATGCCGTGCTGCAGGGCGAC 3272 29 100.0 32 ............................. GAGCCGCGTCTGCCCGTGCTGTTGCAGTTAGC 3211 29 100.0 32 ............................. AGACGGGAGCGATAGTGGTCCGCATGCGCTAG 3150 29 100.0 32 ............................. CCGTAGCCTCTGATCTGCCCGCGTCCGGGGTG 3089 29 100.0 32 ............................. GCGGCGCGGGTCTGTACGGGCAGGCTGCCTTC 3028 29 100.0 32 ............................. TCGAGCACCCCACGGCCACAGAACTTCACCGC 2967 29 100.0 32 ............................. GTCATTGCAGCGCTCTCTTCAGGGGCGGGGAG 2906 29 96.6 32 ............................T GGTCTTCCTGCTGGCCGTGGGGGGTGTGCTGC 2845 29 100.0 32 ............................. ACGAACGGTTGGATGCTCATCGGTCCCCCTAT 2784 29 100.0 32 ............................. TCGACGTCGCCTACGCCGGCGGCGGCTGGCAG 2723 29 96.6 32 ............................T GGTTCGTCGCCGAGTGGACAACTGACGTCGCC 2662 29 100.0 32 ............................. GCGCACGCGCCGCAGTGGTGTTGGATTACGCC 2601 29 96.6 32 ............................C AGCGCGCAGGACATGGGACGGCTGGTGGCTGC 2540 29 93.1 0 .....................C.....T. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.0 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : CCGACCAACTGCACCGTATCGTCGACCTGATGCGCGAGTTGCGCGGCGCGGAGGCCCGCCGCCACACCCGCCTGGAGGTCCCGTTCTACACCGGCAGGCGCAAGAGCGTGGCCGAACTGGTCGAGTCGCTGCCCTAGGGCTTGTTGCCGAAGCGGCCGGGCCCACGTCAGTGCGGCGGCCGGGGTGATCGCGACCGCTGTGGCGGGCCCCGGGGGCCTGCCGGGCCGTGGTTGCCCCGACCGCGAGACCGGTGTGGGTCTGACCGCTTTCAGCGCACGTTCCGGGGTGGGGATGTGCCGTGAGGCGGGGAGCGGTCCGGGGTCCGCGCCCGCTTCCCCGACCGGCCACGGCCGTCGCTCCGGTACGCACGGAACGCTGCGGAGGATCGCTGTGAACGGGTTGCTTCCGTGGAACTGGTCTAGAATGCTCCTGCGGCTGGAGTTCGCTCACGGGGCGGATAACGCGGAGATAACGCCCCGCAAAACCGCAGGTCAGCTTCT # Right flank : TACGCGACGGGCAGCATCACAGTGCCCCCGAAGACAAGGAGCTCCGGGGGCGCTAAACAGCGAACGACCTACTACAGGCGCCCTGTCTTGATCTCCGCCAGGAACGCGGACCAGGCCGACACCGTGAAGTCCAGGTGGCCCGACTCCCGGTGCTGAGTGTCACGCACCAGCACCGCACGCGGAGTCTCCGCGACCTCGACACAGTGTCCGCCACTTGGGTTGCTATAGCTGGACTTGTGCCAGCTCAGATCATGGGTACTCACGAAGACTCCTGCTGAGCTTGTGCGATGAGCTGAAGGGACGCCTCTTGGGGTAGAGCAGCTCCCCGGAGGTCTCCGTAGTGTCGAGCGTAATCGGCAACTATGCCCGGATCATCAGTGGGCGTACCAGAGTGTCGAGTTTCCGTGTACAGCACCGTTCCTTGGTTGGGCACCATGAACAGGGAGAACGCGTGAAACAGGCCAGGGTGTCGCTCGGTCTCGAAGGGGATGACCTGTAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 95732-94604 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRUV01000289.1 Thermobifida halotolerans strain DSM 44931 contig289, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 95731 29 100.0 33 ............................. CGGAACGACATGCCGGTCACCGCGCCGTCGGCG 95669 29 100.0 32 ............................. GGGTGGCCGCGTGCTGGGTTACCGACCGGCGC 95608 29 100.0 32 ............................. AGATTCACTCCACCCGAGATCCGGGGTTGCAG 95547 29 100.0 32 ............................. TTCTGTGGCCGTGGGGTCCTGGACTCGGCCGA 95486 29 96.6 32 ............................T CGGCGATGGCGAGGAGGAGCAGCCGCTCCTCC 95425 29 100.0 32 ............................. CGTCGCTTCGCCTCAGCGTTGCCGCCGCGGGT 95364 29 100.0 32 ............................. ATCAGGCGGCGTGGTGGGGTACTCAGGCCGTG 95303 29 100.0 32 ............................. GCGCAGGCGCTGCTCGCCGAGGTGTACTCGCT 95242 29 100.0 32 ............................. GGGGTGTCACCCTCACCCGACCCCGCAACACC 95181 29 100.0 32 ............................. TCCAACCAGCTCGTCAGCGTCATGTCGGGGCT 95120 29 100.0 32 ............................. CGATCCGTAGCACCAACAACGACACCGGCTAC 95059 29 100.0 32 ............................. ATCTGCAACCCCGCCATCCCCGTGTAGGAACC 94998 29 100.0 32 ............................. CCATACATTGGAATCTCCTCTGCTAGGGGAGG 94937 29 96.6 32 ............................T ACCCGCGCCGCGCCGAACTCGTCGCCGCCGAA 94876 29 100.0 32 ............................. TACCGCAAGCCCTACCACGGCAAGCCCGCCGG 94815 29 100.0 32 ............................. AGGACCGAATCCGGATCCGCGTTGAACCGCTC 94754 29 100.0 32 ............................. AGGACCGAATCCGGATCCGCGTTGAACCGCTC 94693 29 100.0 32 ............................. CCCGCCTTCCGCGCGGCTTCGTCCACGGCCCG 94632 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.6 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : CCACCAACTCCGAGGCCATGGTCAAGATCGCGGTGATCCGGTTGATGGCCACGCGGCTGGCCGACGAGAGCGCGCGTTGGAGCAACCGCCCTGCCGACCAAGCCGTGTAGCCACCCGCATACCCAACAGTCACTTAGGGGTTGGTGTCGAAGTGGTCGGATCCGTGTCGGTGTGGCGGTCGGGGTGATCGTGGTCGCTGTGGCGGGTCCCGGGGGTCTGCTGGGCTGTGGTTGTCCCGGCCGTGTGACCGGTGTGGGCCTGACCGCTTTCGGTGCATGCTCCGGGGTGGGGCTGTGCTGTGAGGTGGGGAGTGGTCAGGGGTTCGCGTCCGCTTCCTCGATCGGTCACGGCCGTCGCTCCGGTACGCACGGGGTGCTGTGGAGGACTGCTGTGGACGGGGTGCTTGCGTGGAACTGGTCTAGAATGCTCCTGCGGTTGGAGTTTGCTCGCGGGACAGGTAACGCGGAGATAACGCCCCGCAAAACCGCAGGTCAGCTTCT # Right flank : CCCGCGGCCCTGGCCGAGTTGGGCAATCCCGCCCGTTTCCGCGACCTCTTCCAGAAGGGCATCCGTATGACGGGGGACGGGTTCGCCCTCGATCCGAGTCTCTTCCCGCTCCGGATCGTCTCCAAGCCGTTACCCCAGGTTGTCTCCTGCGTTCGTCGCGGCCACCTGCCCGCCCCGCGTCCCAGGTAGCGCGCTGCGAAGTGTTCACGCTGACCTCGCCGCCGCCCTCCAGGAGCGGACCGAGCAGATGATGGTCCACCTCGCACGCAGGGCCCGGGCTCTGAAGCGGCCGCCGCTCACCTCGCGGCCCGTTGAGAGAGGGCCGACTTCCTCGGTCTTCGGCGGTGGCCGACCCGCTGCCATAGCCGTCTCTTTTCATCTTAGTGGGAATGGCCCTAATTTGGGTCGAGGGAGGAGGCCTGGTGACATATTGGATGTCGTGGACTGGTTGAACGGATAGAGGTTTTCTCTGGGGTCGGGGCGCCTCCCGGTGTGGTCAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 2 216788-216094 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRUV01000289.1 Thermobifida halotolerans strain DSM 44931 contig289, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 216787 30 100.0 35 .............................. TTGATGCGGGCGCCGTCGCCGTGGTGCCGGTACGG 216722 30 100.0 37 .............................. GCGTGGCCTGCGCGCCGTCCGGCATCGTCGTCCTGGA 216655 30 100.0 37 .............................. CGGGCCTGGGTGGCGTGCGCCCACCGGCACACCTCGA 216588 30 100.0 37 .............................. GTGTGCACGCGGTTCTCCTTCTGACGGGTCTTGCGGA 216521 30 100.0 37 .............................. ATGCCGAGGTCGACCAGGGCGGTGAGGGCCTTGCCCA 216454 30 100.0 36 .............................. CGGAGGGCGGGGGTGCCGCCCTGCCGGGCGGCCTCA 216388 30 100.0 36 .............................. TGGCTCTGCGTCAGGTAGACCGGGCGGGGTCCCTGA 216322 30 100.0 35 .............................. GTCCGGTGCGGATCTGAGCCGGACATGGCGGCGCG 216257 30 100.0 38 .............................. ACGTTGTCGTGGACCAGGGGGCACGGCTCGGACTCGAG 216189 30 100.0 36 .............................. ACAGGAGCGCACGCGCGAACGTGCCGAACGGTCTCG 216123 30 96.7 0 ............................G. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 99.7 36 TTCCTCATCGCCCCTACGAGGGGCAGCAAC # Left flank : CACCCCTGACAAGCCGATCACCACGAAGTCTTTTCCACCGCTCATCCAGTCCTGTCCTCCACGACGCCGTCTCTTCGACATCTGAATCTAGGGCCATACCAACCCTCTTGTCTTCGGTATGGCCAAAGAGCCCCAAGCGCCGCTTTGTGCCCTTATCTGGCATGCAGGAACAGCAGGAAGTCTCTCCACGAGATCGGACGGAGATGAATCTGTCCGCCCATGTTTCGCATTCACGCTGTTGTGGGCATGACTGAACGAATCTTCAGCAACAGAGAGGACCATGAAGAGGGGATCGGCCGCAGCGACAGCGACCCTTCGCTACTCTGCTGCAACGTCGTCTACTAGGAGGAACCACGCAGCAGCACATGTACTCGTCGGCGCTCCGCACACCCCGGTTTTCAGCGACACGCCGGGGCCGGATGCACAACCGGAGGTTCGCTGAAAAAATTCACCGAAACCAGTTCCTGGGACCGGGCATGGCCAGCGACTTTACCCTGGGG # Right flank : ATCCTGAACTTTCTTCGGGAGGAGTCCCTTTTCTTACTGTCACATCCTGTCGGTGGGTAGGTCTTCACCTCGGTATCTAGATCAAGACGGACAGGCCGAGAGAAGGCATGGAGACGACACGCTCACCTTTGCGGTTGGGCTCACTATGCACTACCTACGGCGAGCTTGACCTCGGCGTAGACACCGTGAGGCCCTGTTGCCCGCTCCGCGCACACCGGCGTCGTCCGGGGCAGGCGCCCGCGCCCCTGCCGTCCGTCGATGGGAACACGTTCTTGGGGTGCCCTCGCCGCATTCCAGGGGACTCGGCCAGTGAGACGCCCCCGTCTGGCTTCTGCTCGGTTGGAGTGCCTGATGGCGTTGGTCTCGCTCAACGGGTATTCGGGTACCCCGAGCACTCATCGGGGTTCGATGGTCTGCTTCCGCGGCGAAGGCGGTTCCGCCGCCACTCCTGGCGAGGCCGAGGTGTTCCGCAGAACTCTTCAGAAGTGGGCCACCACCGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCCTCATCGCCCCTACGAGGGGCAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.00,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 226975-226287 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRUV01000289.1 Thermobifida halotolerans strain DSM 44931 contig289, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 226974 31 100.0 33 ............................... TTTTCAGCGAGAACGGTCAAGTACTCCCGTGCT 226910 31 100.0 34 ............................... CCCATAGGGCCGCGTCGATGTCCTCCGCATAGGA 226845 31 100.0 35 ............................... TTGACATGGCGACTGTCCCGGGACGGGACGTACAG 226779 31 100.0 35 ............................... TTGACGACTAGCTGGTCGCCTTGGGGGGTGGTGTG 226713 31 100.0 35 ............................... TTCTCTCGCGCGGTGATGGGCGCGCACGCCGTCAC 226647 31 100.0 36 ............................... GGGTAGAGCGGCCACTCGTAGCCGGTGTCGTCGGTG 226580 31 100.0 32 ............................... CCGAAGGACGCGCGCACCAAGCACGCCCGGAA 226517 31 100.0 36 ............................... CCGAGCAGACCGTGGACCTGACCTCCGGGCTCGTCA 226450 31 100.0 34 ............................... TCGGTCGCCTTCTCCTCCTCGGTCGGCTCGACGA 226385 31 100.0 37 ............................... TCCACGGGCAGCGTCTCAGCGGGGACCTCGTGCCCGT 226317 31 96.8 0 .......................A....... | ========== ====== ====== ====== =============================== ===================================== ================== 11 31 99.7 35 GTTCCTCATCGCCCCTACGAGGGGCAGCAAC # Left flank : CGCCTGGGCCGCCGCCGGAGTCAGCATCCCCCGCGTCACCACCGACCAGGTCAGGATCGGCATCCCGGTCGGGTTGGACGAACTGCAGCCCGGCGACCTGCTGTTCTACGACACCGGGTCGGGCCCCTCACCCAGCCACGTCACCATGTACGTCGGCGACGGCCAGATGGTCAACGCCCCGAGGACCGGAACCACCATCCGCGTCGAACCAGTGCAGAGCGACTACTACTCACCGAGGTTCGTGAAGGCGGTCCGCCCGGCAGGATGATCACAAGCCTCACAACCACCCGCAGCGATACGCACTTCGCTACGCTTCTTCAGCAAGAAGAGACCACGAAGCCGGTCCCCGCCAGGAGCCATGACAACACCTTCATTCCCCACCCGCTCTAGCCCTGTTTTTCAGCGACACGCCGGGGTCTGATGCACTACCGGAGGTTCGCTGAAAAAAGTCACCAAAACCGGTCCCCGGGACTGGGGGTGGCCAGCGACTTTACCCTCGG # Right flank : ACGGTTCTTTGCACTCCTTTATTCGGTCTTGAGAGAAGACCCCATTCCTGTCTTCTCTGTCGACCATGCCAGTCACCCATTCCCGGATTCCTGCGTGAGCGTCTTCGGTGGCGACTACCAACTTCTTATCCTGCCTGCGGTCTTTCCACAGGTGAACAGTCGGCTGATCGGGACCAGGTAGAAATTCGGCGAGGAAACCGAACGAGAACAGTCTCCAGTACTCACCCAGTCCTACCGGTCGCAGCCATAGCGGAGAGGCGCGACGCAATTTCTCCGCAGCGCTACCCCTACCTCGGTCGGCATGTACCTCGATCTGCTTCTTGAAGACAATGGGCAGACCCAAAGCCCCGAGCGGGAACTCTTCTTCGGGGCCGTTGACTACTTCCAACCATTCATGAGTCTTGACTTCGGGGTGGTACCGCACTCCCGGAGTATCCGTTGTCGCACGGAAGTACCTTAGTTCACGGCCAGCCCAGCACAGTACGTCTTCCCAAGAGGTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTCATCGCCCCTACGAGGGGCAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.00,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 3653-4903 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRUV01000291.1 Thermobifida halotolerans strain DSM 44931 contig291, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3653 29 100.0 32 ............................. GCCTCGGGCACGTAGATCAGCCGCCCCTCCAG 3714 29 100.0 32 ............................. GCTGGTGTGCAGATCTCCCACGGGATCGCCGA 3775 29 100.0 32 ............................. ACCCTCCAGGCATGAGAAAGGCCCGCACGCTG 3836 29 100.0 32 ............................. GTGGGCGATCTGCTGGGCGTGGTCGTCCGTTC 3897 29 100.0 32 ............................. CCGCGATCGCGGAGGTCGAGTCCAGGTACAAG 3958 29 100.0 32 ............................. AGGAGCCGGAGGAGTCCGAGGCGGACCTGGTC 4019 29 100.0 32 ............................. GCGTTGAGTCTGGGGGACGCCTACCTGTTCGT 4080 29 100.0 32 ............................. ATCCTGGTCGTGCGGAACGGGTCCGCGTCGTC 4141 29 100.0 32 ............................. CTGGTCGACGACTCGGTGGAGGAGATCCGCCG 4202 29 100.0 32 ............................. CAGTTGGGCGCCGTATCGGAACCCGTCGCCGC 4263 29 100.0 32 ............................. CGTCAGGGTTCGCCCTCAGGCTGTTGGGGGTG 4324 29 100.0 32 ............................. CGTCGATGATCTTCTGCTGTTCGTCGGTGGGC 4385 29 100.0 32 ............................. GCAACGACTCCACGGCCGAACCAGTCGTACCC 4446 29 100.0 32 ............................. GTGATGTCCCCGGTTGGGGATTTGAGGAGGTG 4507 29 100.0 32 ............................. TGGAAGCGAACCGTGCCCAGTACGAGCAGTGG 4568 29 100.0 33 ............................. TACGAGGAGGTGCCGGTTCCCGAGTGGGGTGGC 4630 29 100.0 32 ............................. ACCTGCCGTTCCGGATCGCGCAGGAGGCATAC 4691 29 100.0 33 ............................. TACGAGGAGGTGCCGGTTCCCGAGTGGGGTGGC 4753 29 100.0 32 ............................. GAGTGGGGGGCTGCCACCACGGCACTCCCTGG 4814 29 100.0 32 ............................. CCGACCCACTCCCGGGGGCCGAGCCAGACTTC 4875 29 93.1 0 ......................C.A.... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.7 32 CCGAGCCCCACGCACGTGGGGATGGACCG # Left flank : GCTCGCCGCTGAGTTCCTCTCCGGGATAGGCGGACAGGTCCACATCGGTCTGCTCCTGGAACTCGCGGGTCAACTTCCCGACATCGTGCATCCCCGCCCAGAATGCGACACAGCGCCCTGCCTGCTCCTCGTCCACTTCCATGGCCGAGGCGATCGTCTCCCGCAGACCGGGAGAAAGGTACTCACGCCACAGCACCAGAGCCGCCGCGGCGGCGTCGAGGGAATGGCACACGAGCGGGTAGACCTGCCCTCTGAGCCCGCGTTCTTTGGCCCAGAATCCGAGGTCGACGAGCGAAGTGTTCCTCTCCCCGCTTGCAGGGCCGTACTCAGGCACGTTTCCTCCCACAGTCCGCCATCCCGGTATGCGCAGAACGTAGTGGGCGGCCGACCGCGAGCGGGACGCTTTCACGAAATTGGCCTAGAATCGCCCTACGGGAGGAGACCGCCCGCAAGCTTGATAACGCGGAGATAACGCTCCGCAAAACCGCAGGTCATCTTCT # Right flank : GCTGGTCCAGTCGGTCTATCCGCACCGGGAGCACCGAGCCCCACACGCAGAGACCGATCCGCGCCCTCTGCGCTCCCCGCTGTTGAGCACGACGGAAACGTCAACGGTCTTCGACCGTGGCGGCCCGGTCGGCGGCCACCGGGCTGGGGCGCCACAGTCCCGCCGCAGCCAGGGCGCACATCCCCGTGAGCGTTCCGGCGCCGCCCAGCAGCAGGATCGGGTCCAGGTTCCCGGCCCACCCGGCCAGGGGGTAGGTGAGCAGGAAACAGGCATGGGAGAGCGCGAACTGGGCGGCGAAGACCCCGGCCAGAGCGCCCTCGGGGGCGGCCTCGCGCAGCAGTCGCCCGGTGGGCGCGGACACCAGCGCACACCCCGCGCCCAGCACCGCCCACCCCGCGCCCAGCACCGCCCAGCCCGCGCCGAGCACGGCCGGTCCCGGGGCAAGGGTCCAGCCCAGAACGGTGGCCGCCGCTCCCGCGGTGGCCACGGCGGGGCCGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 1795-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRUV01000309.1 Thermobifida halotolerans strain DSM 44931 contig309, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1794 30 100.0 38 .............................. ACGACGCCGACGTCTGGCGCGTCCGGGAGCTGGTCCGG 1726 30 100.0 37 .............................. AGGGGGCGCGGCTCGCGCCCCTCTCATGGGTCACAGG 1659 30 100.0 37 .............................. TCCTCCAGGGCCTCGATACGGCGCAGCCGCTCCCGCG 1592 30 100.0 35 .............................. CAGAGATCCGTCTGGTGCGGGATGGTCTCCCCCGG 1527 30 100.0 36 .............................. CCGCCACCGCCCGGCCCACCGGCAGAGGACTGCCCC 1461 30 100.0 34 .............................. CCGGAGAGATCGAACCTGGAGAGTCACCCACCGA 1397 30 100.0 34 .............................. GGTGACGTGACCCTCCGCCGACGTAGGACCTCGG 1333 30 100.0 34 .............................. TCGGGGGCTGGCATGCGCACCCTGGTGTACTCCG 1269 30 100.0 37 .............................. TCCGCTACCTGCTGGTATCTGCTGGTCATCTCATCTC 1202 30 100.0 35 .............................. TGGCCGTGCCCCTCCTGACCGTCGGCGTCATCTCG 1137 30 100.0 34 .............................. ATCCGCCAGCCGCGGGCGCTGCCGGTGCGCCCCC 1073 30 100.0 36 .............................. GCGCGCTCCCTGCGGCGGTCGCTGATCCAGCCCATG 1007 30 100.0 34 .............................. CTGTCCATCGTGCTCAACTGCGCTGGGCACTGGC 943 30 100.0 34 .............................. GTGGCAGGCCGACGCCCGGCGCGCTAGGGCTGGC 879 30 100.0 36 .............................. GCGGCCTCAGCCTCGATCGCGTCCAGGTCGACGTGG 813 30 100.0 34 .............................. CCGGACGCCTCATCCGCAAGGCCCGCGCCTACGG 749 30 96.7 34 ..........................T... GCCGTGCTGGCCGCGCTGGCCCTGGGCACACCAG 685 30 100.0 36 .............................. CACCCCAGTTCGACGGCGCCGACCAGCAGCATGCTG 619 30 100.0 35 .............................. GCGACCTCCTCCCACGACGGGAGCGGCCGGTCCCG 554 30 100.0 35 .............................. ACGGCGATGACCTGTCCCACGTCGTCACCTGGATG 489 30 100.0 35 .............................. ACGGCGATGACCTGTCCCACGTCGTCACCTGGATG 424 30 100.0 34 .............................. CCCTGCCTACGCCGCGCCTCAGCGGCGCGCACAC 360 30 100.0 35 .............................. ACGGCGATGACCTGTCCCACGTCGTCACCTGGATG 295 30 100.0 36 .............................. CACCGAAGAGCTGGTCTTGTCCACAGGACCTCCCGA 229 30 96.7 39 ...........C.................. ACGGCCTACCGACCCTGTGGTCCCTGCCTGCGGGCACCA 160 30 100.0 34 .............................. ACCGGCCCGGCGCCGACGTGTCCGACCACCTGGC 96 30 100.0 36 .............................. ACCGTCACCCGCGGCGGCGCCTCCTCGACGGGCCGG 30 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 28 30 99.8 35 GTCGCTGATCATCCCTGGAGGGATCGCAAC # Left flank : ACCACCGATCCCTCAAGCGCAAGGTCAGCTATGAGGAGCTGATTCACCTCGAAGCCCTTAAGATCGTCCGCCTCTGTCTCGAGGGGACTTCTTACAAACCCTTCCGGCCCTGGTGGTGACCGTGTTCGTTGTCGTGGTCTATGACACGCTCGCTGAGCGCAACCCCAAGATCCTGAAGACCTGCCGCCAGTATCTTCACTGGGTTCAACGCAGCGTTTTCCAAGGGGAACTGTCTGCAGCCCAGCACCGCTCCTTCACCGAAGCAGTCAAGGGAGTCATCGACCTAGAGTACGACAGTGTACTCATCTACCGTATGCAGACGCATCACGCCGTACAGACCGAGACGATCGGACAGGAGTTCTCTAGCGGCAGCCCTGTGCTGTGATCGTGAAAGGGCTGCACCCTTTTGACCTGCGATGTTGCACTACCGGCGGTCTTCTGCAGAACAGCTTCTCCACAGGAGTGGGAAGAGGGTTGCAACCTGCGACTTTACCCTCGGG # Right flank : C # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGATCATCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 186-1322 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRUV01000310.1 Thermobifida halotolerans strain DSM 44931 contig310, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 186 29 100.0 32 ............................. AGGAATGGTCGAGAACACGACTACGGTCCGCT 247 29 100.0 32 ............................. GGGTCGGACTGGTCGGACGTGGACTCTACGCA 308 29 100.0 32 ............................. ACGACCAGTTCCATCCAGTCGTGGCCGGTGAG 369 29 100.0 32 ............................. TTCCGCGGCTGGGCCAGCGCCATGAACGGATT 430 29 100.0 32 ............................. GGCATGCGGAGCTTCTTGTCGAGCCAGTGCGC 491 29 100.0 32 ............................. GTCAACGCGCGCGGCGGCGCCGTGGTCTACCT 552 29 100.0 32 ............................. CGAGAATCCGGGGTCCACAACAACCCCCCAGC 613 29 100.0 32 ............................. CAGTAGCGCATGAGCACCTACTTCCTGGGGTA 674 29 100.0 32 ............................. GGCGCGCCCTCGACGAACCCGAACGCCGCCTG 735 29 100.0 32 ............................. AGGCGGCGAGAACACGGAAACACTGTTCCCGG 796 29 100.0 32 ............................. GACCTGGACCCGATCCTCAACCCCGACTCGGT 857 29 100.0 32 ............................. GTGTTCCTCTCGTCAGGCCGCGATGACAGCCT 918 29 100.0 33 ............................. CCCCCGCTGCCCATCAACCCGGCCGCCACCGAC 980 29 100.0 32 ............................. GCAGGGACCAGGCCCGCGCCGCCGCCGGAGCC 1041 29 96.6 32 ............T................ GCCACAGGGCATCACCCCCTGTCGCGCTGGTC 1102 29 100.0 32 ............................. ACGATCACACCCGGCTCCTCTTCAGCAGCATC 1163 29 100.0 32 ............................. CGACGTCGACGACTTTCATCTTCGCGTAGACG 1224 29 100.0 41 ............................. CGGCCCTCCTTCGCCGACAGCAGGCGGCCCAGGCCGCGGGT 1294 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================= ================== 19 29 99.8 33 GTGCTCCCCGCGCATGCGGGGATGGTCCC # Left flank : CGGCCACCGGCAGCCGGTGGTGTCCCGTCGTGGGGGTTGGGGTGGAATGTCTCCGGCCCGGGACCGGCACGCGGCCTCCGTACATCCGGTGCCGCACGAAACTCCACCTGGCGGGTGTTATGTCCGATTTTCGGGAAGTGAAGGAAACCGGCCCGTGTCCCTGGTAAAGTCCCAGGTCGTTAAGTG # Right flank : GCGACCCCGCCAGCAGCCAGCCCCCAGACGCCGTGCTCCCCGCGCATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13257-14167 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRUV01000296.1 Thermobifida halotolerans strain DSM 44931 contig296, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 13257 37 100.0 35 ..................................... ACTGCTGATCAGCACTGCTGATTCTGCTGCCTACT 13329 37 100.0 36 ..................................... TTGGCTCAGGGGCCGGGGAGTCCGATTGATCACCGG 13402 37 100.0 35 ..................................... TCTGGATGGACAACGATGCGGCGGGATGGGAAGCC 13474 37 100.0 35 ..................................... ACCACCACGCCCCCGCCCGCCGTCTGACCGGTGAG 13546 37 100.0 35 ..................................... AGATCCACAGGTCGGCGCTGACCTACGGGCAGTCG 13618 37 100.0 35 ..................................... CTCGTGTAGCCGATGAGCTGGGCTTGCCTCCTGTG 13690 37 100.0 36 ..................................... TCATCGGCGCCGTGGTGCGGGTGCTGGTGGTCCGGT 13763 37 100.0 38 ..................................... GAGAAGGGCGGCATCACCGACGGGCGGTCCGGCAAGGT 13838 37 100.0 37 ..................................... TTCCGGGTGCTGGTCGACGGCTCCGAGGAGCTGGCGG 13912 37 100.0 35 ..................................... GGTCTGGGCGGCTGCGCCTGCGCCACCAGGTAGGC 13984 37 100.0 35 ..................................... GGCGTCTACCTGCGGCGCGGCGCGGGCGCGCTCAC 14056 37 100.0 38 ..................................... GTGTTCGTGTTCCAGGAGCGCACCCCGCCGTACCTGGT 14131 37 91.9 0 .............................G.....CA | ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 99.4 36 GCGACAACGGCCCCAAGCGGGCCGTCCACATTGAAGG # Left flank : CCCCGGGCCGCTACGCCTGGGCCGAACCACTCAAACACACCATCAACGCCGCCGTCGCCGACACCACCCACACCATCGCCGTGCGAGCCCTGGCCAGCGGCGACCTCGCCCCGGCCCGCGAAGCCCTCATCAAGATCCTGGAGATCGACCCAGTCAACGAGCTGCTCTACCGCGACCTCATCCGCCTGGAACACCAGGCGGGAAACCCCAAAGCCATCGACCGGGCCGTCCAGCGCCTCACCATCGCCCTGGACACCCTCGACCTGGACATGGAACCGGCAACCATCGAACTCATCAACCAAGTCACCGCAAACAGGTAGATTCTCATCGCAGTAGCAGTCGGTCTCATGTGAAGGTGGCTCGATGTCCACTTCGGAACCCCAAGCTCTCATCCAGCCCCCGGGAGGTTCCGAAGTCAGAAACGGACAAGAAGGCTTAAATCTTCTCGTCCTCTTGCAGTTGTCTGGCTACTTTCCGAAGCACCCCCTGAACAGAGGGAG # Right flank : AGGTTTGCCTGGTGATCTCTCTGTTCGGGGAATTTGTGGTTTTCTGTTCGGTTTTGTTGTTCTCCTGATTCTTGTCGTAGGCGGCCAGTAGAGTCTTTTCTCCCCTGATTGAAAGCGCGGTCGTCGTATGACTTCCGTGCCCGCGTGGGGTTTTCGCGATTGTGGGAGGAGTGGTGATGTCTGCCGGTTTTGTCGATGTTCTGCTGGAGGCGGTGGGTCCTGGCCGGTCGTGGGCGGGGGTGGTGATGCGGTCGGAGTTCCGTCCGGCCGCGGGGGAGAAGGTGTTTCCGCCGTCGTATCCGGTGAACGAGCGGGAGCCGGGTGCGACGCCGTACCTGTTCGAGACTCGGTGGGTCGGTGACCAGGAACGCGATGTGGTGGTGTTGGACCAGCCGCCGAGCCAGGCCAACCGGGTGGAGCAGGCGCTGCTGGAGGCCCGGGACGAGGGGCGGATTCGGCTGCCATTGTTCGAGCTGGTCGCGGACACGTCGCGGGGGCCG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGACAACGGCCCCAAGCGGGCCGTCCACATTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.50,-16.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 21111-21656 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRUV01000296.1 Thermobifida halotolerans strain DSM 44931 contig296, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 21111 37 100.0 35 ..................................... GAGGTGCTGTCCAGCGACGAGGAGGGCCGCCTCTA 21183 37 100.0 36 ..................................... GACCACTACCTGCGGGTGTTGCGTAGGGGGGGTGTG 21256 37 100.0 35 ..................................... TCCTGGGCGACCGGGCACAGGTCCTCGGGTGGCAG 21328 37 100.0 35 ..................................... ACGCTGGCCCTGGTCGGGCTGCTCGGTCCAGTCAG 21400 37 100.0 36 ..................................... CGCCCGTATCTGAAGCCGTGGCTGGCCGGGGAGGCC 21473 37 100.0 38 ..................................... TTCTGCGGCTCCGGCACGGTGACGGCCGTGGGGGGCGG 21548 37 100.0 35 ..................................... GCCGCCGACAGCCCCCTGAACACCTGGACCGAGAT 21620 37 83.8 0 .............................GAGA..CC | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 98.0 36 GCGACAACGGCCCCAAGCGGGCCGTCCACATTGAAGG # Left flank : GCCCTTCCCCTGCTGCGCTTGACCGGCGACGGCAACCGGCCGCAGGCCACCCTGTGGCACCGCCACCGCAAGAGCCGCATCATGGTCTGGCCCGTCTGGAAACCCGACCTCGACCTGGACGCCGTCCAGGCCCTCATCGAGCACCGCGCGCTCAGTCCCCGACCCCGTACTGACGACGACCAGGTCCCACCTGTGCTGTCCCGCCGCCGCCTCGCCCCCCTCGGCGTCATCACCGCCGCAGCCGCCCAGCGCCGACTCGTCCCGGGAGGAAAATCAGCAGGAGTCCTCGTCCCCACCCCCGTCCATCTCGAATAGAACACACGCCGCCCCGGTCAACTCGGCACAGACAGGAGCCCTCTTGCCCAGCCGCTTGGGAACCTCCAGTGCACACCACAACCCCAGGAGGTTCCCAAGCAGAAAAACAGACACCATGGTCGGTACTTCCCAAAACTCCAAGCGGTGTCAGTCGTCTACCAGACGAAAAACCCTGGTCAGACGGA # Right flank : CTGGAACGTGAGGGTATCCGTCCAACCCGGTCTTGCTGCCCCTCGTAGGGGCGATGAGGAACGGTGTCCGTCTCGTAGATCATCGCCCCTCCACCGGGTGGCTGTCCCTTGTAGGGGCGATGAGGAACCGAGACCTGCTTACTGCAGCCGCTCGCGCCCAACATATTGCTGCCCCTCGTAGGGGCGATGAGGAACCCCTGCGGCTCCCGCGGCTCCGGCGGCTCCGAGGCATTGCTGCTCCTCGTAGGGGCGATGAGGAACCCCTGCGGCTCCCGCGGCTCCGGCGGCTCCGAGGCATTGCTGCTCCTCGTAGGGGCGATGAGGAACCCGAGGGTAAAGCCGCCGGTCAGCCCCGGTGTCAGGGACTGGTTTCGGTGGTTTTTTCAGCGGACCTCCGGTAGTGCATCAGACCCCGGCGTGTCGCTGAAAACAGGGGTGGGAAGGCGTAGCAGCGGGACGGTGCTGGGAATGACCGCTGATCACGGTGGGATGACAGTTCT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGACAACGGCCCCAAGCGGGCCGTCCACATTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.50,-16.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 21983-21688 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRUV01000296.1 Thermobifida halotolerans strain DSM 44931 contig296, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 21982 30 96.7 36 ......................A....... TGCCTCGGAGCCGCCGGAGCCGCGGGAGCCGCAGGG 21916 30 96.7 36 ......................A....... TGCCTCGGAGCCGCCGGAGCCGCGGGAGCCGCAGGG 21850 30 100.0 37 .............................. TATGTTGGGCGCGAGCGGCTGCAGTAAGCAGGTCTCG 21783 30 90.0 36 ..................A....A....C. CCCGGTGGAGGGGCGATGATCTACGAGACGGACACC 21717 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 96.7 36 GTTCCTCATCGCCCCTACGAGGGGCAGCAA # Left flank : CGGAGAACAAGCCGATAGCCGCACTGGAGGGCACCCTGTCAGGGTGCCCTCCCCCTCGCAGGGGCGATGAGAGTGAGCAATGACGCGGTTCAGGACAGCTTCAAGACCACGTCAACAGTTTTGCTACCCCTCACAGGGCCACGTGTGCCCTCCAAGAGAGCACACGGTCTGGGACGAGGTCCTCGTCCCTGCCCAGTCTTCCATGGAAGATCGCAAGATCGGCAAAGCTTGGCTCTGCCATACTCAAATTCTCTCCCCAGTCCCCCACTTCCCCAAGTGGTGAGGAACGATCGTTGTCGGCTGTGACGGACGGAGAACACTTTTCCCAGAACTGTCATCCCACCGTGATCAGCGGTCATTCCCAGCACCGTCCCGCTGCTACGCCTTCCCACCCCTGTTTTCAGCGACACGCCGGGGTCTGATGCACTACCGGAGGTCCGCTGAAAAAACCACCGAAACCAGTCCCTGACACCGGGGCTGACCGGCGGCTTTACCCTCGG # Right flank : GACCGGGTTGGACGGATACCCTCACGTTCCAGGTTTCTCGTGGACGGCCCGCTTGGGGCCGTTGTCGCATCTCGGTCCAGGTGTTCAGGGGGCTGTCGGCGGCCCTTCAATGTGGACGGCCCGCTTGGGGCCGTTGTCGCCCGCCCCCCACGGCCGTCACCGTGCCGGAGCCGCAGAACCTTCAATGTGGACGGCCCGCTTGGGGCCGTTGTCGCGGCCTCCCCGGCCAGCCACGGCTTCAGATACGGGCGCCTTCAATGTGGACGGCCCGCTTGGGGCCGTTGTCGCCTGACTGGACCGAGCAGCCCGACCAGGGCCAGCGTCCTTCAATGTGGACGGCCCGCTTGGGGCCGTTGTCGCCTGCCACCCGAGGACCTGTGCCCGGTCGCCCAGGACCTTCAATGTGGACGGCCCGCTTGGGGCCGTTGTCGCCACACCCCCCCTACGCAACACCCGCAGGTAGTGGTCCCTTCAATGTGGACGGCCCGCTTGGGGCCGTT # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTCATCGCCCCTACGAGGGGCAGCAA # Alternate repeat : GTTCCTCATCGCCCCTACGAGGAGCAGCAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 31311-30216 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRUV01000296.1 Thermobifida halotolerans strain DSM 44931 contig296, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 31310 31 96.8 38 .........T..................... CCGTGATCTGCCAGGACCGGGCGGTGGCCCGGCTACCA 31241 31 100.0 34 ............................... CGCAACGCTTCCTCGTGGAGGCCGCGGACGCCTA 31176 31 100.0 34 ............................... GTGGACCATCCGCCAGGCGGTCGCCCTACTGGAG 31111 31 100.0 37 ............................... CCGTAGGAGTCGGTGTAGTCGCGGGTGAACAGGCAGG 31043 31 96.8 35 ......A........................ CCTGCTGGCGCACCTGATGGACCGAAATCTGGAGT 30977 31 100.0 35 ............................... CCAGGCGTCGCGCCCGCGGCGGCGTAGTCACACCG 30911 31 100.0 34 ............................... GTGGGGCCACGGTGGTTCCGCTGTTCAATAACCA 30846 31 100.0 34 ............................... CGCAACGCTTCCTCGTGGAGGCCGCGGACGCCTA 30781 31 100.0 35 ............................... TGGCACCCCGACCGCGAGGGCATCGGCGTCGTGCC 30715 31 100.0 35 ............................... GGAAGTTCCCGTCCGAGCTGCGCAAAGAGCTGCGG 30649 31 100.0 35 ............................... CAGGGACGGGGTGGGGATGTCGGGGTCGGGGTCGG 30583 31 100.0 35 ............................... CTCACCGGCCACATCAACACGATCCGCCAGCACCC 30517 31 100.0 37 ............................... CCACATGAACCAGTTCCGGGCCCTCCTCACCAACCCA 30449 31 100.0 40 ............................... ACGATGTGGAATGCCCACTGTGCGCATGGGAGCAACCCCA 30378 31 100.0 37 ............................... GCGTAGAGGCGGCCCTCCTCGTCGGAGCTGAGCACCT 30310 31 100.0 32 ............................... CACCACCAACTCAAGCGCACCGTCGCCTACGA 30247 31 83.9 0 ......A............AT........TT | A [30218] ========== ====== ====== ====== =============================== ======================================== ================== 17 31 98.7 36 GTTGCTGCCCCTCGTAGGGGCGATGAGGAAC # Left flank : TACGGCGAGGACGGCATCACCGCGTTCATGATCCCCCTGACCATCGACGGGCTGGTGTACGCCTCCTCCATGGTCCTGCTCGACGCCGCGCGCAACACCCGACATGCCCCGGTCCTGGCCTGGTTACTGCTGTGGCTGGGCATCACCGCCACACTCGCGGCCAACATCGCCCACGGCCTCCACCACGGCCCTGTTGGAGCCGTGGTCGCCGCGTGGCCCGCCATCGCCCTGGTCGGCTGCTACGAGATGTTCATGGGGCTGGTGCGCTCCACCAGTCGGCAGCACGGGGACCAGCACGGACCAGACCTGGTCCAGCAGGCGCTGACGGCCTACAAGGAGAGTATCGAAACCGGAGAACGACTGTCGGAACGCAAACTCGCGAAGAGATTCGGCAGATCCCGCCGCTGGGCGAAAAAATCATCAAAAGCACCGAAACCGCAGAGCACAACTGAACAACCCGTCTCTCACCTCACCACACTTCCTTCATTGGAATGGAACTT # Right flank : CCAGGGTAAAGCCGCTGGTCGCTTCCGGTCCCAGGGGTCGGTTTCGACGGCTTGTTCAGCGGGCCTCCGGTCGTGCATCAGACCCCCGCGTGTCGCTGAAAAACGGAGGCTGGCGGGGTAACAGGATATCGCTGGGGCTAGTCGGTCGAGTCCGATGGTGTGGTGGCGAAACTCAGCACCAAGAGGAAGCTTGTAGACGATGACGTGGTCGTCCCGTGGTCAATGAAGTCGCTGACACCGCTCTGGAAACGACGGAGTTGAGCTGGCGAGAGTTGCCCTTCGAAAACACTGCGCTGTACATGGTGCAGGCAGCGGCGGCAGGTGCGCAGAATCTTCAGGTTGTGGTCCTGGGCCGTGCCGCAGACGGCAATGACGCGCGTCCCCGTTCACCACTTGCCACGCCTCGTAAAGGCGATGAGGTCGCGAACGTCGGTAATGGGGATGTGCACGGAGTCACCGCTCTCGCGCTCGATGACCAGGGACTGGTCTTTGCGGCGGAT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCTGCCCCTCGTAGGGGCGATGAGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.00,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 54762-55401 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRUV01000312.1 Thermobifida halotolerans strain DSM 44931 contig312, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 54762 30 100.0 31 .............................. AGTACCCGCCCGGGACGAAACTGTTCCAGCT 54823 30 96.7 31 .............................A TCGTCGCCGCCTTCTACGACTTCGGTGTCTC 54884 30 96.7 31 .............................T ACTACCCCCAAGCCGAACCGACCAGCGTGAC 54945 30 100.0 31 .............................. CTGAGGTTCGGGTCGTCGATGAACTCGTTGC 55006 30 96.7 31 .............................C TGTCCGGGCGGCCCGAGCGGGTGCTGTCGCC 55067 30 100.0 31 .............................. GCCAGACCGACATGCGAGAGCGCGCCGCCAT 55128 30 100.0 31 .............................. CCGCACCAGGAAGGAGACCCCCGGTGAGTGA 55189 30 100.0 31 .............................. CCGCACCAGGAAGGAGACCCCCGGTGAGTGA 55250 30 96.7 31 .............................C TCAGCACAGCCGCCCGCGTCGCCTGGGCAGT 55311 30 96.7 31 .............................A GTGAGGGCTGCGACGTTTTCCAAGAAGACGA 55372 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== =============================== ================== 11 30 98.2 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CGGAGCCGACATGGAGTCCGGCCGCAACTACGCCGACGCCTTCGAACACGGAGTGATCTGGTGACCGTCATCGTGCTCACGAACTGCCCCGCAGGACTGCGGGGCTTTCTCACACGCTGGCTCCTGGAGATCTCCCCTGGCGTCTTCATTGGAGGCCCTTCAACCCGTATCCGAGAGGTGCTCTGGGCCGAGGTGAAGGAATACGCAGGCAACGGGCGCGCCCTGCTGGCCTACAACACCGACAACGAGCAGGGCTTCGCCTTCAAAACCTACGACCACAAGTGGATCCCGGTAGACCACGAAGGCTTGGTGCTCATCCGTCGGCCCAGCGAACCGCAGACTGTCACCTCACAGGTCAAGCCCCAGGGGTGGAGCAAGGCAGCGAAACGCCGCCGATTCGGGAGGCGGTAGTAGTTCGAGTGCCAATGGCTGATTTGTCCGATTTTCAAGAAGTGAATGAAATCCGCTCCGACGGCAGGTAAAGGTGCAGGTCATTCAGT # Right flank : TCCCCGGTGCGCCGTAGATCCACGCGAGAGAAGTGCTCCCCGCGCATAGAGATTTCCGCGCGTGGGTTTGGAAACTCCGTCACCGCTTGCTTCACTTCCCTATTGGTGAGTTCGCACCTATCTGTCAACTGATAGGCAATCGGTTGGCGTTCTGACGGTTTCGTCCTCGGATGTTGGCGAGTGCGTCAAGCGCGGTGTCGTCGGCGTTCGGGAGCGTGTGCAGGTAGCGCTCGGTTGTGGTGATCGATGCGTGGCCGAGGCGCTCCTTGACGACCATGAGGTCGGCTCCGCCGGCCAGGAGCCAGGATGCGTGGGCGTGGCGGAGTTCGTGCGGGGTGATGTCCTTGGGCAGGTCGGCCTCCTCGCGGGCCGGGTGCCAGATGTTGGTGCGGAAACACTGGGCGGGGATGTGGCCGTCGGTGTTGACCTGGCGGCGCCTGCGTGGTTGGTCCTTGCCTTCGGCGCGGCGCAGAGCGCGGTAGCGGGCGAACGCCGTGCGG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10161-8728 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRUV01000187.1 Thermobifida halotolerans strain DSM 44931 contig187, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10160 29 100.0 32 ............................. CGTCCCACGTCCACGTGTAGTCGGCGGGCTCG 10099 29 100.0 32 ............................. GATCGGCCGTTCCGGATCAATGTCAACAGTGA 10038 29 100.0 32 ............................. GACGGTGCGTTGCGTAAGCACACCGTGGACGG 9977 29 100.0 32 ............................. CGTCCCCGGTAGAGGGGCCGGCCTTTGCGGTC 9916 29 100.0 32 ............................. GACTCGGTGGTGGCCGCGCACATCGCGTTGCA 9855 29 100.0 32 ............................. GCTGATGACGACTACGCCGCCCAGATCGCTGG 9794 29 100.0 32 ............................. GACTCAGTCCGGCCGCGTAGGGGGTGGCGCGG 9733 29 100.0 32 ............................. CGAAATGGACATGATGGAGTGGCGCATCATCG 9672 29 100.0 32 ............................. GCACCGCCATGCCACGTCCGAAGACCAACTGG 9611 29 100.0 33 ............................. CTGGCGAAGGTGGCCTGGGGCGCCAGCCACCGC 9549 29 100.0 32 ............................. TCGCCACTAGAAATAGCCGCCACCTGGGCAGC 9488 29 100.0 32 ............................. TCGGCGGTGATGGGCATCGTCAACGGGATTGT 9427 29 100.0 32 ............................. TCCTCGCCCACGCCACTCAGCTCAGCCACCGT 9366 29 96.6 32 ............................T GTTGAGGCTGCTGCGGACACCCCGGAGGTTGG 9305 29 100.0 32 ............................. CACGGGCCGCTGCGCACCCACCCGATCGACGA 9244 29 100.0 32 ............................. CCCATCCCGGTGAGGCGGGGCGGTACGGGTAC 9183 29 100.0 32 ............................. CGGATCGCCGCGACCCCCAGCGGGTCCTGCGG 9122 29 100.0 32 ............................. CGGATCGCCGCGACCCCCAGCGGGTCCTGCGG 9061 29 100.0 32 ............................. CGGATCGCCGCGACCCCCAGCGGGTCCTGCGG 9000 29 100.0 32 ............................. TCGCTGAGAAACTTCTCGCGGTGACCGGTAGC 8939 29 100.0 32 ............................. CGACCCGACGCCGAGGTCCTGGACGTGGTCAA 8878 29 96.6 32 ...........................T. CACCCGTTCCCGCTGCCCTCCGGCCACTACTT 8817 29 100.0 32 ............................. ACCACAGCCTTGGCCGCCCCTCTCTTTCCCGC 8756 29 89.7 0 ..A........................TC | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.3 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : CGCGGGCGACGTGCGCGCGGCCCTGGCCGCCTACCGGGGCGAGCTGCTGGGCCGCTCGGAGGCGCCCGGCGTCCGCACGGTGCGCGACGAGGTCGCGGCCACCCTGCGCACCAGTGTCCTGGAACTCGGCGACAGCGAGCTGCTGTGGCAGCTCGCCTGCCGCGACCTGGGCCGGGAGGACGCACAGGTGCTGGAGGCCCTGGTCGCGTCCCTGCCCCGCACCTCCCCGCGCCGGGCCAGCGCGCTCGAACGGCTCCGCGCCCTGCTGGCGTCCGACGGTTAGGACGAGGCCACTCCGGGAAACAGAGAGCGGTCCGGACGTCCGCCCCCACTCCCCCACTGGTCACGGCGTCGTCCCGGTACGCGCGGAACGTAGCGGGCGAGCCCGCCGTGAGCGGGACGTTTCCGCAAAGCTGGTCTAGAGTGGTCCTGTGGGTGGAGGCCACTCGCGGGGTGGATAACGCGGAGATAACGCTCCACAAAACCGCAGGTCAACTTCT # Right flank : CCAACTGGATCCCGGTGTGCTGACCCGGACGAGCCGGGTCGAGGAGTGGGCGGTGTCGTCCGATTTCCCCCTATCAAGGAGCTGGACGAACGCGCCCAGGCCCGGCACCTGCTGCACGTCCAACGGTGCGCCCCCGGTCCGGCCCCGATCGTGTGCGACAAGGGCTTCGCCGGAGCCAAGATCGAGAACGCGGCCGCTGGCCTGGGCCATCCGCTCATCCGCCCGGTGCGCGCAGACGAGCCCGAACCCGAAGTGAAGGTGTTTCCGTCCTGGCTGCGCCAGCGGATCGAGGCGATCATCTGGACGCTGAAGAACCAGCTCAGGTTGGAACGCCACAACGCGCGCACCACCGAGGGACTGTGGGCCAGGGTGTGTCAGAGGATCTGCGCGCTCAGCGCCGTCACCTGGCACAACTGGCTGATCGGTGCCCCCCGTCAAACGCTCCCTGACCGCCTACGACCACTGACCAACACACCCACAACCCCCATCAACGATCTAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //