Array 1 23604-27841 **** Predicted by CRISPRDetect 2.4 *** >NZ_AONB01000001.1 Nitrincola nitratireducens strain AK23 contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 23604 29 100.0 32 ............................. CTGATGGCAGCATTAAAAGAGCGCCGAATCAT 23665 29 100.0 30 ............................. GTCTCAGCTTACGGGTAAAAGTCTCTCATG 23724 29 100.0 32 ............................. TAAATTCAACAAGAATTTTGTTTTGAGGTGAT 23785 29 100.0 32 ............................. TATGGATTTACGCAGGCTCAGATTGCCAACAT 23846 29 100.0 32 ............................. TGTCGTCTCCAGAGTCATCATCGCCCCAGTTA 23907 29 100.0 32 ............................. CTATTGCAAGAATAGAGCAGTTATCACAAACC 23968 29 100.0 32 ............................. CATTTCTGTCAGTGGGCAGATGAATTCAAATC 24029 29 100.0 32 ............................. CGTAATCAGCAGCTCGTTAGGATTGGCAATCA 24090 29 100.0 32 ............................. TATTGGATTAGTTCGTTCATGATTCACTTTCT 24151 29 100.0 32 ............................. AGAGTAGCGAACATCATCAGTTTTACCCTTGA 24212 29 100.0 33 ............................. CTTGCAGTGACCCGCGCCACGACACCGGACGGC 24274 29 100.0 32 ............................. GCGTCAGAATTATAGTATCTGCCATGGTGTTG 24335 29 100.0 32 ............................. CATTTGCTATCGCCTCCAGATTGCTAACGGTC 24396 29 100.0 32 ............................. TAATTCGTTCATTTCTTTCACCAATACTCAAT 24457 29 100.0 32 ............................. CACTAATCCAGCAAGCTCTTATCACCCTAGAA 24518 29 100.0 32 ............................. ATATGAAACAAATCTTTATTCGCGACGGCGCC 24579 29 100.0 32 ............................. CTTTGGGTTCAATTCAATTGTCATGGCATCAG 24640 29 100.0 32 ............................. CCCTGCCTATCTGGACAGGGTTGCATTTGTTA 24701 29 100.0 32 ............................. ATCGTAGCGGTTCGGGCAAGCTGCCAACACCA 24762 29 100.0 32 ............................. TTTTTTGTAAATGTAAATATGGCGGTCAATAA 24823 29 100.0 32 ............................. TGCCCTGCCCCCTATCAGTCTGCTACAATAGA 24884 29 100.0 32 ............................. TCGGGCGTACAACCACGGGCGGCAAGGGTGGC 24945 29 100.0 32 ............................. CCTTAGCATTCAGCCACGTGCTTGGATGTTTT 25006 29 100.0 32 ............................. CGTCGCGCCTTATGGGGGTGGCGAGGCCAGAA 25067 29 100.0 32 ............................. GCTGGACTCGGCGCGCTGAGGAGACATTACAG 25128 29 100.0 32 ............................. GCTTCAGCAGCTCTTCTGGCGTAGTTATAGCA 25189 29 100.0 32 ............................. TTAGGGAGGCTGTATGATTCGCTGTAGCTCAA 25250 29 100.0 32 ............................. CAAACTAGGATCCGTCAAAACAAAACCCTGAT 25311 29 100.0 32 ............................. CTGTCAAGGCTGAGCGATTAAGAGTAGAGCAG 25372 29 100.0 31 ............................. GATTTAGTACAAGCTGGCTATGAGTTGCAGC 25432 29 100.0 32 ............................. CAATAGGATTGCCAATAGCTGCAGAAATTCGC 25493 29 100.0 32 ............................. ACTATCAACGCGCTGCCCGAGCCGATCCAGTA 25554 29 100.0 32 ............................. TTAATTAGCCGGATTAACTCCAGCTCCATTTG 25615 29 100.0 32 ............................. AGTTATCACGGGTAGAGAAGCGCCTAAACGAT 25676 29 100.0 32 ............................. CCATTAGCGCGACTGTGGCTGATTGCAAAAAC 25737 29 100.0 32 ............................. TCTCTTTCATACCCATGGTTGTCCCTTACCAT 25798 29 100.0 32 ............................. GCTGATGCCGATGCCGATTACCAACATAGCTA 25859 29 100.0 32 ............................. TCCGGCAGGAGCGTTAAAGGAATCGCTGAGGA 25920 29 100.0 32 ............................. TTTGATTCTGAATACGCTGAATACAGTGTAGT 25981 29 100.0 32 ............................. ATGTCAGTATTGTAGAACTCGATAGGATACTG 26042 29 100.0 32 ............................. CGTGTTTAGATCGACAACATAGAGACGCACAC 26103 29 100.0 32 ............................. GGTTCTGGTTCTGCTTGCTGGCCACAAGATGG 26164 29 100.0 32 ............................. AATTGTGTCTTTCATCGCCACACCTCCCGCAG 26225 29 100.0 32 ............................. ATGGCTGCAAACTGCGCAGGTAATGACGGTGT 26286 29 96.6 32 ............................T TTGTTAGGTAACATGCTCGGTCTAGTGCACTC 26347 29 100.0 32 ............................. TACCAGTCGGATGAAGAATACTTCATGGATTA 26408 29 100.0 32 ............................. TTATCAAGTGGTGCAATGTCAGCGGCAGAACG 26469 29 100.0 32 ............................. TATATCTTTTAATGTTAGTTCACGGGCATAGT 26530 29 100.0 32 ............................. GCTTTTATTACAAATAATACCGTTTGTGAGGT 26591 29 100.0 32 ............................. TCATCTGAATACGTCAACTGGTGGAAGCAAGC 26652 29 100.0 32 ............................. TTCTCTGCAGCTGCATCACTAGCAGGACGTGA 26713 29 100.0 32 ............................. ATCTTTAGTCTCTTTCTTAATAGGTATCTTGT 26774 29 100.0 32 ............................. ACACTGGATGTGATCAGCCTGCATCAGGCCAG 26835 29 100.0 32 ............................. TTTTCATTTTCTTCAGTTAATTCGTCACGTTC 26896 29 100.0 32 ............................. TTCTAAATCTTCGAGTTTGTAGCCGTCTGGGA 26957 29 100.0 32 ............................. TTACTGCGGCGGTTGCGGGTGCTGTTGCTAGA 27018 29 100.0 32 ............................. GCGTCCATTACTGCGACGAGCATTTCTCGCGG 27079 29 100.0 32 ............................. CCATAGACGCAATTCTAGGGGCTTTGTTAAAT 27140 29 100.0 32 ............................. TCGTTAATTAACGGCTTAGTAATTGGATGATC 27201 29 100.0 32 ............................. CGGGTCTTTGTCATCAAACGGGTTATCGTGTG 27262 29 100.0 32 ............................. TTACTGGCTTTGTCCCGTGTCGGTATAGATTG 27323 29 100.0 32 ............................. ATGAGCCGATATTTCCAGCTCTTCTTGATTGA 27384 29 100.0 32 ............................. AAAACACCTGATAAATCGGTGCTTTTTCACTA 27445 29 100.0 32 ............................. TCATCATCCAGAACCGGCTCTGGCAACTCATG 27506 29 100.0 32 ............................. AGGACGTGCAACTCATGAACCTGAAGCGCCTC 27567 29 100.0 32 ............................. CATTACGTCTTGAGACATATCTGGCAATGCTA 27628 29 96.6 32 ............................A ATCTGTTCATCTGTTAGTGAAACCGGATCTCC 27689 29 100.0 32 ............................. TTTCGTTATAAGTGCGACAGACAATGGGTATG 27750 29 100.0 32 ............................. ACCTTCCATTTTAGCCCCCGAATACTAAGCGA 27811 29 86.2 0 ....................C.....ATT | C,C [27830,27835] ========== ====== ====== ====== ============================= ================================= ================== 70 29 99.7 32 CTGTTCCCCGTAGGCACGGGGATTAACCG # Left flank : AGAGGTTTTGGCAGCAGGTGAGATCACACCACCTGAGCCTTATTCAGATGCACAACCACCAGCGTTACCTGAGCCACTTTCAATCGGTGATGCGGGACATAGGAGTGGTTGAATATGAGTATGTGCATGATTGTGACCGAAGCGGTGCCACCTAGATTGAGAGGTCGTTTAGCGATATGGCTGCTGGAAATCAGGGCGGGTGTCTATGTCGGCGATGTGAGTAAACGAATCAGAGAAATGCTCTGGGAGCAGGTATCTGTTATGGCAGAAGACGGTAATGTGGTGATGGCTTGGGCAACTAATACAGAGTCTGGATTTGACTTTGTAACCTATGGTCAGAACCGACGAGAACCAATTGATTTTGATGGTTTAAGGCTGGTCACATTCTTACCATTGCAAAATGAAAATTAGAGCCTAATAACGCTCTTTAACAATATGGAATATTTGGTAGAAAAATGCATATGCTTTTTTCTTCATTAAATCAACTATATACTTTTAGT # Right flank : TGATTTCTGCAAGTTAAAAAACGCACAAGGGCGATAGAAGAAGCTCAAAGTATGAGTCAGTGATAGCAATGGGCATAGACACCACACTAGTGAATTTTATAATCTAGGTGCTGTGTAGAATCTATGCAGGGGGAAGGCCCCCAAGGGCTATCCAATGACCTTGCTGATGGTATACAGGCGCAGCGACTATGCTGCACACCGCAAGCTTTTATCCAGAACAGTCTATATTAGCTTCCTCTCAACCTTCATCCGAATACACACAGACATTCCAATCGGCCGCTAATCCATCTTCAGCTAAACAATAGCGCTCAAAAAAACCGCTGATCTCATCGCGTTGGCAGTGGGTTTCGAAGCTTTGCATGTCTTGCCAGATTTCATGGAAAACGATGGGAAAGCTTGTGCCTTCTGCAAATGGGCTTTGGATGTGTTTCGTGACAATGTATTGAATGCAACCATCTTCCCTGAGGGTGTTGGGTTCCAGAGATTGTAAAACTTTGAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTAGGCACGGGGATTAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //