Array 1 162812-160769 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMF01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462398, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162811 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 162750 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 162689 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 162628 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 162567 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 162506 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162445 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162384 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162323 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162262 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162201 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162140 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162079 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162018 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161957 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161896 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161835 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161774 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161713 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161652 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161591 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161530 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161469 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161408 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161347 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161286 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161225 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161164 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161103 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161042 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160981 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160920 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160859 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160798 29 93.1 0 A...........T................ | A [160771] ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181423-179319 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMF01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462398, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181422 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181361 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181300 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181239 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181178 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181117 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181056 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 180995 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180934 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180873 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180812 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180751 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180690 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180629 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180568 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180507 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180446 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180385 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180324 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 180263 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180202 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180141 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180079 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180018 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 179957 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 179896 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 179835 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 179773 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 179712 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 179651 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179590 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179529 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179468 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179407 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179346 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //