Array 1 420430-422532 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCJT01000012.1 Salmonella sp. zj-h17 contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 420430 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 420491 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 420552 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 420613 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 420675 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 420736 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 420797 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 420858 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 420919 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 420980 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 421041 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 421102 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 421163 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 421224 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 421285 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 421346 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 421407 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 421468 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 421529 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 421590 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 421651 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 421712 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 421773 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 421834 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 421895 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 421956 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 422017 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 422078 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 422139 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 422200 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 422261 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 422322 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 422383 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 422444 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 422505 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 440165-442146 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCJT01000012.1 Salmonella sp. zj-h17 contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 440165 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 440226 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 440287 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 440348 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 440409 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 440470 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 440531 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 440592 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 440653 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 440714 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 440775 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 440836 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 440897 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 440958 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 441019 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 441080 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 441141 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 441202 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 441263 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 441324 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 441385 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 441446 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 441507 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 441568 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 441629 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 441690 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 441751 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 441812 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 441873 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 441934 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 441995 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 442056 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 442117 29 100.0 0 ............................. | A [442144] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //