Array 1 465312-459071 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADFBK010000005.1 Streptococcus uberis strain GCPRG113 Contig_5_315.308, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 465311 36 100.0 30 .................................... AAAATATCCAGCCCATGTTCGATATATCGA 465245 36 100.0 30 .................................... ATTTTAGACGCAAAAGACCCAATTGCATTT 465179 36 100.0 30 .................................... GCTTGACTGGTTTTGTTTGTGTACTACAAG 465113 36 100.0 30 .................................... AATCTTACCTTCTTTAGTTTTCCTGTTGCT 465047 36 100.0 30 .................................... CAACTGGGGAGGTCTTACATGGACCGGTTC 464981 36 100.0 30 .................................... ATGCATATTTAGACGACATCGACAAAAAGA 464915 36 100.0 30 .................................... TAAATTTACCAACATTTGAGTTGCTGAGAT 464849 36 100.0 30 .................................... TCATGATTCTTCTCGAGTTAGAATCATTAT 464783 36 100.0 30 .................................... TTGCTCAATCGTTTCATCTTCAATCTCCAT 464717 36 100.0 30 .................................... ATCAGTCTTAGATAGTATAGCATGGGCGCT 464651 36 100.0 30 .................................... CGTTTATAATCTGATTGTGTGTAATTATTT 464585 36 100.0 30 .................................... TGATGGTGTTGAGTTGCAAGCTGCTGCTAA 464519 36 100.0 30 .................................... AAAGCAATTAAACGAGTATGCGGTCGCTCA 464453 36 100.0 30 .................................... TAACATCTTGTTCATATTTTCTACAAACAG 464387 36 100.0 30 .................................... AAGGTTCAAATCAATATTTTTTGTATTTCT 464321 36 100.0 30 .................................... CCATGTAAGATGGAATGAGTTGTCTTATCT 464255 36 100.0 30 .................................... GGTTATCTCAAGAAGAGTTACTCTCTTTAA 464189 36 100.0 30 .................................... CTTTGTTAGAGAACATCACTTGGCTCTAGA 464123 36 100.0 30 .................................... TCTGGTGACAATGTTTCCTCAACATAGTCA 464057 36 100.0 30 .................................... TGCAGCAAAGCTTGACTTACCAATTCCTTC 463991 36 100.0 30 .................................... TTGAAGATAATGCAAAAGTTGGAATTTACT 463925 36 100.0 30 .................................... ATGATTATTTTTGGTGGCGTCAAGTGTTTT 463859 36 100.0 30 .................................... TTTCTTTTGGCGTTAAATCCATTGCCGTTT 463793 36 100.0 30 .................................... CAGGTTGATTGAGATAACTTTCAAACTTAG 463727 36 100.0 30 .................................... GAGCACAAAATAACTGGGATAGTAATGCAA 463661 36 100.0 30 .................................... TTTGCGTCATCACCATTCCGAGAGATTTAA 463595 36 100.0 30 .................................... AACAGGTATTGTTCTCTTATAAGTTATACA 463529 36 100.0 30 .................................... TTGCGATGAAGGTTATTGGTACTATGTCAT 463463 36 100.0 31 .................................... TTTAAAAACCCTATAATAAAGGGATTTCAAA 463396 36 100.0 30 .................................... TCCTATTTTTTATTTCTAATATTTGCATTA 463330 36 100.0 30 .................................... AAATATCGGATATCGCTGATATAATTACTT 463264 36 100.0 30 .................................... AGATAAAAATCTATCTATTTTGAATTGGCT 463198 36 100.0 30 .................................... AAAAAATTTAAAACACATCAAAACATACTT 463132 36 100.0 31 .................................... CAAGCAAGTCTGAAGTAACAGCTAGCGTCAA 463065 36 100.0 30 .................................... ATCGCTGAAAGGATATTAAATGAGACGCTT 462999 36 100.0 30 .................................... ATGGGAAATCATCAAACAAGTTGTTATGCT 462933 36 100.0 30 .................................... CTGGCACACGGCCTATTCCAACAGCGCCGA 462867 36 100.0 30 .................................... TTTTCACCTCCTTACTATACTGTTCGAAAT 462801 36 100.0 30 .................................... GACAGAGCTATGCTTGAAAATTACTGCACT 462735 36 100.0 30 .................................... GTATTTTGTTACGTAGCCCTCGCTATTCAA 462669 36 100.0 30 .................................... GATATCAAACTTAGCTGAGATGTTAAACTG 462603 36 100.0 30 .................................... ATTAAGCTATGTGTTAATGAGACAGCCCAA 462537 36 100.0 30 .................................... AGTATTTTTCTGTGAACCTGCGACTGTGAG 462471 36 100.0 30 .................................... TCTTTTTCCATTTTTACGGAATGTTCAGTT 462405 36 100.0 30 .................................... GCATTCAATTCTGCTTGTCTCTTGTTCTTT 462339 36 100.0 30 .................................... GATGGACACCGAAGAGCACCCAGAATATGC 462273 36 100.0 30 .................................... TAAAGGTCGTTAATTGATGAATGCGTTCCT 462207 36 100.0 30 .................................... TGCAGCTTTTAATGTCAATCAGGCACGGTT 462141 36 100.0 30 .................................... CACTACGTGCAACAATGGATGTTGCTGTAA 462075 36 100.0 30 .................................... GGAATACGGTGACCTACTATCTATATATGA 462009 36 100.0 30 .................................... TGCATTATCTCCAGTTGCAGGTGGCGCATT 461943 36 100.0 30 .................................... GTCACATCACGAATAACAAACATTTCTTTA 461877 36 100.0 30 .................................... TTCGTTGTACCACTTAAGCGCTGCATCTCT 461811 36 100.0 30 .................................... GAGGAGTATTTAGAATGGTGTCATGAGCAT 461745 36 100.0 30 .................................... TCAACGACTTAACAAAATTTTTAGACGCTT 461679 36 100.0 30 .................................... TCTGGCACTTGGTTGCTTATTTGGTTGATT 461613 36 100.0 30 .................................... TCTTCTAAAAGTGGCTTTAACAGGTCCATA 461547 36 100.0 30 .................................... TTTCATCAGCCATGTTCTCAATCATCTTCT 461481 36 100.0 30 .................................... TAATTCCTCCTTTCTTAAAGTAATGACATA 461415 36 100.0 30 .................................... CATCGATTTGTTTGTTTTTTACTTTGAGTT 461349 36 100.0 30 .................................... ATGACTGGTTAGTCAAAAACGGCTATCAGT 461283 36 100.0 30 .................................... TGCTCTGGTGATTTTCGCACTGACAACCTG 461217 36 100.0 30 .................................... AGACAACACTTCGCGACGGTGACGAAGAGA 461151 36 100.0 30 .................................... CAATCGATTAAACCACTGCATGGTCCGTTT 461085 36 100.0 30 .................................... TGGTTTCTTCGTCACATTCACGCCCAGTAC 461019 36 100.0 30 .................................... TATGTTAAGAACGGCGACAAAATATTCGCT 460953 36 100.0 30 .................................... ATAATCTTGACGGCCCGTGGCTTGGTGGTG 460887 36 100.0 30 .................................... ATTATCACAGTTATTGCGACGAGTTATACT 460821 36 100.0 30 .................................... TGGCGAATTGCGTCAAGAATTGGTTTGCAT 460755 36 100.0 30 .................................... TAGCTAAGGCATTCGGTACTGAAGCGCAAA 460689 36 100.0 30 .................................... TTTCATTTTTTTGTCAGTTTATTTTCGACG 460623 36 100.0 30 .................................... CAAGAAATCCGAAAAGATTTTGACTGGGCG 460557 36 100.0 30 .................................... AACTCAGGTACAATTTCATACAATAATGCA 460491 36 100.0 30 .................................... ATAGGTATGTCGAAGTGAGTGGTTACGGAC 460425 36 100.0 30 .................................... CAGTAAATTATCCGCAAGCATTTTGCCAGA 460359 36 100.0 30 .................................... TCTATCCAACCCAGAAACAGCTAAAGGTCT 460293 36 100.0 30 .................................... ATAGACTATTTAGTGCCTTTTCAACAAAGT 460227 36 100.0 30 .................................... AGATTACGAAAAAATTAATCAAGAACTCCA 460161 36 100.0 30 .................................... TTTTAAAAATATGCAACTGTATCCATGATT 460095 36 100.0 30 .................................... ACAACGCAGAAAGACCGGTTGCGGTATATG 460029 36 100.0 30 .................................... ATCAACTGTTAGTATGCCAACAGCGACAAT 459963 36 100.0 30 .................................... AGAACAGATGAAAAAAACGTGTGCGATTTG 459897 36 100.0 30 .................................... TTGGCATACTGCCTATGCTAACTCTGCTGA 459831 36 100.0 30 .................................... CACAGAAATGTTAATGGTCGTGATGTTACT 459765 36 100.0 30 .................................... CCATAACGATCGCCCATATCATATCTAACT 459699 36 100.0 30 .................................... ATCTTCAAATGGTTTTGAAGTATTTGCCAC 459633 36 100.0 30 .................................... AGATTTTAGTAATTATATTGGTCAAAAGTT 459567 36 100.0 30 .................................... CTGAGGTTCTTGAGGCTAGCGCAGAAATTG 459501 36 100.0 30 .................................... TTGGTCAGAGATTAAAGCGTATGTTGATGC 459435 36 100.0 30 .................................... ATGAAATCATAGACTTCTTGATAGTCGTTT 459369 36 100.0 30 .................................... AAGTACGAAAGGGAGGCAATTTTGGCAAAC 459303 36 100.0 30 .................................... AACCAACGCCTCTTTCATTTCGACAGATAA 459237 36 100.0 30 .................................... ATTTAATCATGTCGAAGGTTGTCATTTCAA 459171 36 100.0 30 .................................... ATGGAAATAACCACTCAAACTAAGAAAAAA 459105 35 83.3 0 ................G....AT....G..-....T | ========== ====== ====== ====== ==================================== =============================== ================== 95 36 99.8 30 GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Left flank : AAAAGCCAGAAGTTAAATCTATGGTTGATAAACTTGCTGCAACAATTACAGAATTAATTTCTTTTGAATGTTTGGAAAATGAACTTGATTTAGAATATGATGAAATAACGGTGCTCGAATTAATAAAAGTATTGGGTGTCAAAGTTGAAACACAAAGTGATACAATTTTTGAAAAATGTCTTGAAATTTTACAGGTCTATAAATACTTAAACAAGAAAAAATTACTCGTTTTTATCAATACGGGTTCCTATTTGAGCGAAGAAGAAGTGGAACAATTGTTTGAGTACATTTCTTTGTCGAATCAATCTGTTTTATTTTTAGAACCACGGAAATTATATGATTTTCCGCAATATATTTTAGATAAAGATTTCTATCTTATGCCGCCAAAAGTGGTATAATAGTAGTAGAATATATCCCAATTAATGGAATCTTTCAAAATTGAAATCCTGCTAAGATGAGTAGCGCGATTACGAAACTTTTTGGAAAAATTCTTCCACGAG # Right flank : TACATAAAACAGCCACTTTCTAGAGTGCCTGTTTTTTCTTACTTTTCTTATTTTTGCATGATTTCTTTGATTTTGTGTGACTTTATCCAGTCTACTGTTTAAAATGTATAATTATTAATAAAATGGTCTTGAAAATGTATATCAAAAAATGCGTTTTCAGGGTTTTTCTTGTTTTTTTGATGCTTTAAACCCTATTAAAATAGGATTTTATAGTAATTAGATTTTTTAGTCAGTTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAGAAAAAATAAGAGGAGAGATTCCGGTGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATTGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGTCGTGAGCATTTGGATGAGCATTATCATCAATTGAAAGATAAAGCTTTTTATCCTGGTTTGATTGATTATATGATGAGTGGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //