Array 1 44962-43082 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMAH01000016.1 Streptococcus equi subsp. zooepidemicus strain ISU6659 contig016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 44961 32 100.0 33 ................................ TAGCCAGTCTCCGCTAAGGCAGGAGACAAGCCC 44896 32 100.0 35 ................................ CACGATGATAGCTTTATTATAGCACGCAAGGAGAA 44829 32 100.0 33 ................................ TAGCCAGTCTCCGCTAAGGCAGGAGACAAGCCC 44764 32 100.0 36 ................................ TTTAAATGTTTTTAATCACAGAACAACAATCGATAC 44696 32 100.0 35 ................................ AGAATCTCAAAGTTCAGATGTTAAGTCCCGTCAAC 44629 32 100.0 33 ................................ CACTTCCTCTCCTCAATCTGAAGTAAAGGCTCC 44564 32 100.0 35 ................................ AAAAGGGGTCAAAGGCGATATACATAAAAGCCCCT 44497 32 100.0 35 ................................ CACTTGATGAAAACATCATTAGCAGTGACTTGTAC 44430 32 100.0 34 ................................ TTGAAAGCCAAGAAACGATTGAGTTTAATAAGTT 44364 32 100.0 35 ................................ CCGTCAAAGATGTGCATCAGCCCTGTACCGTCTCC 44297 32 100.0 35 ................................ TTTTTTACCCATGAATTATAACTCCTTATGAAATC 44230 32 100.0 33 ................................ CTTTGAAATATACTATCGTAGATAGTAAATCCT 44165 32 100.0 33 ................................ TAGTCAGTCTCCGCTAAGGCAGGAGACAAGCCC 44100 32 100.0 34 ................................ CAGTATGTCAACATACTCAGACATCACACGTCTC 44034 32 100.0 33 ................................ ATCAAGTGACGGTTCGTCGTCAATCTTTTTAAA 43969 32 100.0 33 ................................ CCAGTTAAAGCTGCCTAGTGTTAAAATGTCGCT 43904 32 100.0 33 ................................ CCAGTTAAAGCTGCCTAGTGTTAAAATGTCGCT 43839 32 100.0 34 ................................ TTTAAGGCCGAATCTTTTTCGCTTGGTTCAATGT 43773 32 96.9 33 .................T.............. GTTGTAAGCTTTGAGGTCACGTCCTGCACCATC 43708 32 100.0 34 ................................ TCACCTCCTATTATCCTTATTTTATCATAAAATT 43642 32 100.0 36 ................................ TTATTGACGAATATCGTACAGAAAAAGATGCTTACC 43574 32 100.0 34 ................................ CATTGTAAATCAGGCTTGCAGCCAGAGATCATTA 43508 32 100.0 34 ................................ CCAAGACCATCTAAATGATTAACAAGTTTGACTG 43442 32 100.0 33 ................................ TCATATAAATTAACAAAATCTCTTAAGCTGTCT 43377 32 100.0 34 ................................ TTTTATCATAGTGTAAGAATCTTGATAGACTGAA 43311 32 87.5 35 ........C..TGC.................. TTTGGCATGCCTCACATCAGACTCATGTCTAGCAT 43244 32 87.5 33 ........C..TGC.................. ACAGAAATAATAAAGTCATCCGCATATCTCACG 43179 32 84.4 34 ........CCAT.C.................. AGCAACGGGTTGTTAGGAGGCTGATCATGACTAA 43113 32 84.4 0 ........CCAT.C.................. | ========== ====== ====== ====== ================================ ==================================== ================== 29 32 98.0 34 GTCTCGCCTTTCATGGGCGAGTGGATTGAAAT # Left flank : TGATAGCTTTATTATAGCACGCAAGGAGA # Right flank : TTTGCTGCTATGCAAGGAGTGACACTGATTGAAGTCGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGCTTTTTATGGTACTATGTCAAATAGATAAAAATCTCTGTGTCAAGTGTAGTGGGTGACTGATAACTAAGCACGAGAGGAGACGAAGGTCGCCTTCTCTTTTGTCATGTTCAAAGCAAGCATAGATAAGTTTCTTGAAATTGTCAAAATTTATGTACCTAAAAGCATTGCATTTGATGCCTTTGATAAATTTGTTAGTCGCTTCAAGCTTGGCGTTAGAATAAGGCAGTTCAATGGCATTGATGATATAGTCGTTATAGCGTATAAAGGTGTTTAAAGTCGTTTTGAATGGGTGATTGAGATGAGGCAAAGCGTCTTGACTTGACCCAAAGAAGAGCTCCGCTTTCTTCTCCTGCAAGTGAAAAAGAAGTAGCTGATAAAG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGCCTTTCATGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA // Array 1 1913-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMAH01000042.1 Streptococcus equi subsp. zooepidemicus strain ISU6659 contig042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1912 32 100.0 36 ................................ ATTTACTGGTGCTGTTTGAGTAACAGGTGCCGATTG 1844 32 100.0 33 ................................ TTATAGATATTTGGTTTAAAGGCTTTATAAATT 1779 32 100.0 37 ................................ AAGAGATGATGTATCATACATCTATCAGCTTGTAGCT 1710 32 100.0 35 ................................ TTTTATGCTTAGACCACGCTGATCAGGACAGTGGG 1643 32 100.0 35 ................................ TTTATCACTTTTTGTTGACGTTGACTGACCAATTC 1576 32 100.0 33 ................................ AATTTTCCCGCAAATTGATTGAGCTTAATGATG 1511 32 100.0 33 ................................ TGCTGAATCTAAAATCAATTCCTTACTAATCAA 1446 32 100.0 35 ................................ TCCTTGCCACAGGAGCAGACACACCACAGTTTACG 1379 32 100.0 34 ................................ ACAATTACGCTTGCTATTATTGATTTAGGTAAGT 1313 32 100.0 34 ................................ AAACCATTTATCATCTTGTGGAATGGGCTGATGA 1247 32 100.0 33 ................................ AGCTTGTTCATTTGCTATTTTAACAACTTTATC 1182 32 100.0 34 ................................ TTTAAAATTTTAAAAACCAAAGACAGAAATAAGA 1116 32 100.0 34 ................................ AGGTTAGTAGAAAGAGCCTAAAAAACCCTAATGG 1050 32 100.0 33 ................................ TATTGTTTTTGCGAGTAAGGATATTGCCCTTGT 985 32 100.0 35 ................................ TGCTTCACTCTTTTGTGATTCCTGCCAATCTCGAT 918 32 100.0 33 ................................ TATTAATAAGACTACTGCTGATGAATTTGTTGA 853 32 100.0 34 ................................ CTAGCTGGTCAAATCCAGACTACCAAGGCCCGAC 787 32 100.0 35 ................................ ATACTATGTCAATCAAGGCTATCTTGATGGATTGG 720 32 100.0 33 ................................ ACGAGGATAATATGCCGATTGATGTTGTTAATC 655 32 100.0 34 ................................ TCATGCAATCAACAGGCCTAAAAGACAAAAACGG 589 32 100.0 35 ................................ GGAACAATGGCAGTTTTACTGCAGCAGAAAAAAAT 522 32 100.0 34 ................................ TATTAATAAGACTACTGCTGATGAATTTGTTGAT 456 32 100.0 34 ................................ TTTAAAATTTTAAAAACCAAAGACAGAAATAAGA 390 32 100.0 33 ................................ AATACTTTGAAGGCAGAACAGGACTTAGAACTA 325 32 100.0 35 ................................ TGGTACAGGTTGGGCCTTATTTAAAGGCTCAGACC 258 32 100.0 34 ................................ ATTCCCGGCGGCTTTAGATAGGTGAATAGGGGGC 192 32 100.0 33 ................................ ACCTGCAGTTTTATTTTCTTTGGCTGCTAGCTT 127 32 100.0 35 ................................ CACGATGATAGCTTTATTATAGCACGCAAGGAGAA 60 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 29 32 100.0 34 GTCTCGCCTTTCATGGGCGAGTGGATTGAAAT # Left flank : AAGGCTATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACGGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGAGTCACTCATAAAATGCTAGGAGACTCGCGCTAAAATAAGCTAAAAAAATAGAGAAATGAGAGGTTATAGCTAAATATGTTATTAGCTAGCCTGTGTCATTTCTCTATAAACTGTGCTATGCTGCGCA # Right flank : TTAGCCAGTCTCCGCTAAGGCAGGAGACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGCCTTTCATGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : NA //