Array 1 74067-71391 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKFY01000023.1 Lacticaseibacillus paracasei strain RI-210 20150702.X-R210_S12_R1_001_(paired)_contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 74066 36 100.0 30 .................................... TACAACGAAGCCATTCGGAAATTAGCAGCG 74000 36 100.0 30 .................................... TTGCTCATATTGGAATCAATGTCTTTCGCG 73934 36 100.0 30 .................................... CAGTAGCAACATAAACCCTAGTACCAATAA 73868 36 100.0 30 .................................... CAACCTTACAGAAGTTCTTCAAGAGCGGTT 73802 36 100.0 30 .................................... GGACGAGCAAATCTAACCGCTTCGGGCCAA 73736 36 100.0 30 .................................... CCGAAGGATAAGCCAATATTTGTACCAGAC 73670 36 100.0 30 .................................... GACTTCGAATGCTGAAGAACTAGCTGATCA 73604 36 100.0 30 .................................... GGGGCACCTCGATATACGGGTACCCCATCT 73538 36 100.0 30 .................................... CGAATTTAAGACGATGAAACTGCCGTATGG 73472 36 100.0 30 .................................... AGAGTTTATTCAGCATGATAGTACCAAATT 73406 36 100.0 30 .................................... TCAAATAGCCTCTTCGAAAGTTAAAGGAGG 73340 36 100.0 30 .................................... AGCGTGGCGTAGCGCTAACTTGTCATTTTT 73274 36 100.0 30 .................................... AAAAATTGGGGATTGGCAAGATTACGACTG 73208 36 100.0 30 .................................... TATTTCGCACTTCCAAAATCATAGCCATCA 73142 36 100.0 30 .................................... CGCCTGAACATTGCATCGATGGTTTGATCA 73076 36 100.0 30 .................................... GTTGGTGGCAGCGATTCATTGCTGACGTCC 73010 36 100.0 30 .................................... AACAATTGAAGCGGTGGAAGCTATAGCCGC 72944 36 100.0 30 .................................... ACGTCGCCGCGAATTTTCCGCATTACCGTA 72878 36 100.0 30 .................................... TCGACAATTGTGACACGGGTTTCAACGTCA 72812 36 100.0 30 .................................... AACGGTGCTGCCAACTGGGTGCTCGCGCGC 72746 36 100.0 30 .................................... TTGAGTTCTGATTGTTAGTTGTATCTTGGT 72680 36 100.0 30 .................................... CTTCATCTAATGATGAATTAACTAACAAGT 72614 36 100.0 30 .................................... AACGGTGCTGCCAACTGGGTGCTCGCGCGC 72548 36 100.0 30 .................................... CTAACCACTGGACTGGCTGGAGGGGTCGCC 72482 36 100.0 30 .................................... CATCGTACCCTCACAAAAGCTAACGCCGGC 72416 36 100.0 30 .................................... CTTTTATGAAGAACTGTTTACACCGGTTAT 72350 36 100.0 30 .................................... TCTTCAAGGTCTTGTGTGGCAATAGCGTTT 72284 36 100.0 30 .................................... TCAATATAACTCGCATCATAATCAAGATTA 72218 36 100.0 30 .................................... AAGGTGAGCAAATCTTTGATGTTAGTCAGC 72152 36 100.0 30 .................................... ATCTCACTGATGTTATCGGCGATTTACGAG 72086 36 100.0 30 .................................... GGGATTGTGGGCTGACGATAGATATACGCT 72020 36 100.0 30 .................................... CTAACCTTGGCTGTGAATACTGGAGGCGTC 71954 36 100.0 30 .................................... GTAAAACCATCATTCGTCTTGGAGTCAATC 71888 36 100.0 30 .................................... CATATTGACGTTGTGAACGTTGCATTTCTG 71822 36 100.0 30 .................................... CTTACGTCAACGGTTATACCGTGCGCAAGG 71756 36 100.0 30 .................................... AAGGGTTAGCGCCACTTAATCCTGACAACT 71690 36 97.2 30 ................................A... AAAGGCTTACGTTCAGGCGATTGAATCCGG 71624 36 100.0 30 .................................... ACCCAGTTTCCTCGTTGCGCAGATGTTTGT 71558 36 100.0 30 .................................... CCGAGAAGGTCGGACGATCAACTACTTTCG 71492 36 100.0 30 .................................... AGGAAATTCGAGTTCTTCCCGCAATTGATG 71426 36 83.3 0 C.............C..............G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 41 36 99.5 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGTGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAATCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTCATTCTCATCGAGTTCTCAAAAGTGAACCGAAAGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGTGAACTAGATTGATTAGGAGATTGTGTGAAAACAACG # Right flank : AAACAGCAGTGAGACTAAACTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGCGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAATGCTAAGGTGAAGATTAATACCGGCGCCGATGCGAGTGCCAAGGTGCCGGCAGCCGGCACCTTAGTGATGCGTCAGCTTTATGCTGCACCACACGGCAAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //