Array 1 32297-31721 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIXN01000012.1 Thermococcus thioreducens strain DSM 14981 Contig012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 32296 30 100.0 37 .............................. AGACCTTGGCGATAAGAAGAGCATCCCTGCCCTTCGG 32229 30 100.0 37 .............................. TTAGATCGGCTGGCGAAAGCTCTTCGCTGTAAAAGTG 32162 30 100.0 37 .............................. AAACACTAACAAGCTCGACACTTTCTCCGCCAGCCAT 32095 30 100.0 37 .............................. CCTTCACCAAACACAAGCTTTGTGTATTCTTTTCCAT 32028 30 100.0 37 .............................. CGGCGAATGTTGAAATCATGAGCCGTCTAATCGTCGC 31961 30 100.0 37 .............................. GCTTTGGGTGGTCTGTATAGTCCTCAGCAGGATAGTT 31894 30 100.0 38 .............................. TGCCTTAGTAGCATGGGCTGGGGCGAAAACCTAGGTGA 31826 30 86.7 46 ...................G.....CCT.. GTGTTTCATGCGTTTAAGTTCGAGGGGGTGGGGGACGGAACGTCCC 31750 30 90.0 0 CCC........................... | ========== ====== ====== ====== ============================== ============================================== ================== 9 30 97.4 38 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : CTCTAGGAGAATTGAAAGTGTAGCTCTTCTATCGCTTCTTCGATTTTCTCAAGCT # Right flank : CAAACTTACAATAACTCCCCGAACAGCAGGTCTTCCTTTTTTCCTCCCGCCTTCTTGAAAACCCTCTCGCTCCAGGAGACGCTCCCAACGCCCCTTGGCCTGTGGGCATCGCTCGCGAAGGCCAGCTTTACGCCGCGCTTTATGCACTCCCTTATGAAGTCAGTGTCGGGAACACGGTAGCGGGAGCTTATCTCGAAGGCCTTTCCGTTGGCCTCTGCCAGATCGAGAACCTCCTCCAGCTCCTCCATTGATGGATACCCTATGTGGGGAAAGTTTGCACCGAAGTGCCCTATGACCGTCACGTTCTCATCGAGAAGGGCCAGCTTCACAAGCCCGATGTACTGGCTCGGGCTCTCCAGCCACTCGTGGACGCTGGCTATCACGTAGTCGAGCTTTTTCGCCATGACGTCCGGAACATCGACTCCTCCGGATGTTATGTTGCCCTCAACCCCTGCCAGCACCGTTATATCCGTCTCCCCTCCCCACCGCTTTATCTCCCT # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 71042-71886 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIXN01000006.1 Thermococcus thioreducens strain DSM 14981 Contig006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 71042 30 100.0 37 .............................. TCAAGTCTTTGTATGGTATACCATTGAAATGATAACT 71109 30 100.0 36 .............................. TAGAATTCTCGTTAGACCACCGATGAGCAGAAAAGC 71175 30 100.0 36 .............................. GAACCCCACAATCGTCACAGTAACCTCGAACGTGAA 71241 30 100.0 36 .............................. TCAACCACTCTCGGCATTCTTCAAGGTTCATGTTCC 71307 30 100.0 37 .............................. TTTTCACTAGACCCAAGTGCATGAGCCTAGCCACCGC 71374 30 100.0 39 .............................. CAGGTGCTATTAGCGGTTTCTTTTCAATCATGCGCTCCC 71443 30 100.0 38 .............................. ATAACCACGCCGGTTTATGCACTTTAGCGGTGATTGCT 71511 30 100.0 42 .............................. TATTTTAGGTTCTCGTACAAACTTCAAAAACCCCAAATTCAG 71583 30 100.0 36 .............................. GTAGAATCAGCGCGACAACTCCCGAGACATGCGGCG 71649 30 100.0 37 .............................. ACTATCGTCGGCCGCGTGGTTGAGAAAAAGGCTGTTC 71716 30 96.7 36 .............................C GCCGAGGAGCTGTAACGGGCTGGGTTCGATGCCCCA 71782 30 83.3 45 ...G...............G.....CCT.. GTGTTTCATGCGTTTAAGTTCGAGGGGGTGGGGGACGGAACGTCC 71857 30 86.7 0 CCCG.......................... | ========== ====== ====== ====== ============================== ============================================= ================== 13 30 97.4 38 GTTCCAATAAGACTCTAGGAGAATTGAAAG # Left flank : AATCGGAGCTCAGAAATTTAACGGTTTCGGCTCTATCACGCCCAGGTTTTTCCAATTGGGTTTATCGTTCTCATCTGCTTGTTTGACTCAAAAAGCTCCCCTCAGATGGCCCAAGAAACCAAATTTTTGTTCCCTAATTATTGCCACTTTTTGTTCCATTTCTCCCATCATACTGTAACGAAATTTTTTCGAGATGTCTGGTTGAGGAAGTACTGGATCCATTAAGGCTTGAACCCTGCTAAAACTGTTTATTCTCCTATTTAATATCTGCTAAATATCGCGTTGAGGCTTTAAGGCCCCCTGGACATTCGGGAGATCCCTTGAACCTTTTTGTTCATGGCATCTTTGGAGTCCCCTCAAGGGTTTTTGCCAATATTTTCCCCGGCAAAATCTCGAATTTTGAGCCTTCTCATGACTCCCTTTCCAGCGGTTTCCAGAAAGACTTAAATATTGGGAGTGTTTTAGAGGCTTATTGGGCAAATGGGAGGAAATTCCAGCCT # Right flank : GTTGAGAAGCCCGGCAGGGAGGGTCATCTGAGCAGCATACCAAAGGAGCGCTCGAAGATCTCGCCGTGGCCGCCAAAGGCCTCGAACATCCGCTCCGAGTACGCTGATGAGGCGACCCTGAGGAACTCCCGCAGGTTCGTCTGTATCTCGTCGGTCATGGGGACGTGGAGGGGCATAGGTTCGTAGTAGTCGAGGCCCTTCATGAGACCCGTTGAGAAGTACCAGAGCGTTTTTCTGACTTTCCTCCCCTTCACCACCGAGAAACTTGCACCCGAGCAGTGAAAGGCCGCGTGAAGCACGATTATTTTTTCTATCTCAACGCCCTTCCTGAGGAGCCTCTTCCGCTCTGAATCGCCCGAAAGATCCGTTATCCTGTAGCCGCTCCTCGTCTGGGTGTCGTGAGGGATCCGCAGGTGGTGAACAATCTCAACCTTAGGGTCATAGACTAGGACATCGGTTCCCCCCACTACAAAAAGCTTTCCGTCCCGGACCTCTATAAC # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 670-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIXN01000010.1 Thermococcus thioreducens strain DSM 14981 Contig010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 669 30 100.0 37 .............................. TTATGTCCCACGTCACTGGAGCTGTAGCGGTGTTGAG 602 30 100.0 37 .............................. AAGACAAACACTGGAAACCAGAGCGCAAACCTCGCTC 535 30 100.0 36 .............................. GAACCTCCCCACGTCCTCGGTGCTGATGCTAACACT 469 30 100.0 36 .............................. CCGAAAACTTTTTAAGGAGAAGTGCGCTAACGGAGG 403 30 100.0 38 .............................. GTAATTACAAAAAGCCTTTTCCATCTACCTTTTTCAGT 335 30 100.0 36 .............................. ACAAAATCAAGGGCGACGTTATAGAAGCCCTCCACA 269 30 100.0 37 .............................. TTTAGGTGTCCCCGGTGCGGTTCCCTCCTTGATGTGG 202 30 100.0 36 .............................. ACAGCGTCACGTCTATTTTGCCGTTCAGCTCCTCGA 136 30 100.0 39 .............................. CTGGTGGCGGTTCTGGGAAGGCTATATAAGGTAGTTTAC 67 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 100.0 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : GTCTGGAGGCTGAGGGAGCTTGGATTTGACGTTCTATCACGCTGAGAGAATTTATTTTTCGGATATCTCTCCTCAGAGGGAGCAATTTCTAAAACTCCGCAGGTGAGCCTCTCGGGAAATCACTTTTTATGGTTCCGAGGGTATAACTTATTGTCGCTATTTTAAGCATTGATTGTAACGAAATTTCTTCGAGAATCATGACAGGGGAGGAGCAGGGCTCGAAAACGCCGGCAACTTGTCAAAACTGGATATTTTGGATTTTAAAATATTAATATCGCCGTTTTCGGCGTTTGGACGTATCACGGTGCTCGGGAAATCACATGGACTTTTCTGTTCACTGAACGTTTGCAGTCTCTTGGACTCCCATTTAACCCTTCCGAGCTCTCTGGCCTCACCGTTTCAGGCATTATGAGAGTCCCTTTTCTATCGGTTTCCAGAAAGGCTTAAATATTGGGGGTGTTTTAGAGGCTTATTGGGCAAATGGGAGGAAATTCCAGCCT # Right flank : GTTAACTTTCAGCTTCAATAAAACACCCATAGCAAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA //