Array 1 27157-25403 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXA01000023.1 Neisseria wadsworthii strain C2008000421 C2008000421_S15_ctg_2825, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 27156 36 94.4 30 ..C...................T............. TGCAGCATCGCAGTATCAACGACTTTATTG 27090 36 100.0 30 .................................... AGAACCCAATACCATATTGGATTGCTGCGG 27024 36 100.0 30 .................................... ATAATTTCCGCCTGCTCCAGCTTGATTAAC 26958 36 100.0 30 .................................... AATATACGATCAGCAGTGCCCGTTAGTTCG 26892 36 100.0 30 .................................... TGCCCATCAGAAACCCTAAGATGGTAAACC 26826 36 100.0 30 .................................... TTAAGGAGCTGAATCTTGATGCAAGCGAAT 26760 36 100.0 30 .................................... ATATGCCGTTGAACTAGCTTACGGACAAAA 26694 36 100.0 30 .................................... AAGCTCGCCGATAACGATACTGCGGTGGTG 26628 36 100.0 30 .................................... ATAAAAGCCAAACAGGGCAAAGAAAAAAGC 26562 36 100.0 30 .................................... CCGAGCCACTACCCGAACCACTGCCGTTGG 26496 36 100.0 30 .................................... GACAGCACATAATCATGTGCCTGTTCGCTT 26430 36 100.0 30 .................................... ACATGTTCACGGTTCATGTTGTAAAGCTCT 26364 36 100.0 30 .................................... GCTTTCGCGATGCCGATAGTGATGTCTGTT 26298 36 100.0 30 .................................... ACAAGAATCAACCGGTTGCGACTTAAATTG 26232 36 100.0 30 .................................... TTATGATGTAGAAGATAATGGTGTTACAAC 26166 36 100.0 30 .................................... ATACGACCGGTATTTTGATTGGTTACGACA 26100 36 100.0 30 .................................... AACATACTGATAGCTTTAACCTTGTCCATT 26034 36 100.0 30 .................................... AAAATCCAGCTTATTCATTTTCAGACAGCC 25968 36 100.0 30 .................................... GCCAATATCGCGGAGCGCGACCGCATCAGC 25902 36 100.0 30 .................................... TTTTGCATGGTTAAATCGTCAAGATTCATT 25836 36 100.0 30 .................................... ACGCGTAGCGAATCGGCACGCCGTGCCGGC 25770 36 100.0 30 .................................... GAAAAGGGCGATATTGACGTTGTTGCCATT 25704 36 100.0 30 .................................... AAATTTAATATACGTTGGGATGATTCTAAT 25638 36 100.0 31 .................................... TTTCCGTTTTCGTCCCAAGCTGTTGTTGTGA 25571 36 100.0 30 .................................... AAACCACACATCACTACCGATGGTACTCTA 25505 36 100.0 31 .................................... GCGGTTTTGCGTTGTAGTTCTTTTAAAGAAG 25438 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 99.8 30 GTTGTAGCTTCCTCTCTCATCTCGTAGTGCTACAAT # Left flank : GCTGGAGTTTCCCGAGTGCAAAAGGTTGGAGAGCGAACTCTTGGCGGTGCAAAAAGCATTTCAAGCGGATTTTGTGTGGCGCGACACGGCGTACAGCCAAACTTTACAGCAAGAGTTGAATCTGTATTTTGAAGGCCGTCTGAAAAACTTCGCCACGCCGCTCGACCCGGTCGGCACACCGTTTCAGCAGCAAGTTTGGCGCGCATTGCAAAGCATTCCTTACGGCGAAACCCGCAGCTACAAGCAGCAGGCGGAACGCATCGGCAAACCGCAGGCCGTGCGCGCCGTAGCTTCTGCCAACGGGCAGAACAAAATTTCCATCCTGATACCGTGCCACCGCGTGATCGGCAGTAACGGCGATTTAACCGGCTACGGCGGCGGCCTTGCGCGGAAAAAGGCATTGTTGGAATTGGAAGGCGCAATGCCTGTCTGAAAAAAGATAAGATGGAAATTGATATGGTCGTGACGGTGAAAAAGAAGAAAATAAAACTTCAAGCGTG # Right flank : CCTTCAATAGGGAAGCCTTATAAAATAAGGTTTCCCTGTTTTATTTTGGTTAAAAAAAACGACTTTAAAAAAGTAAAAGTTGGTCGGCATTGACCTTTTTTTCGCGGGGTTTTGGCTCTCCAATAAGCATAACCATGCTTGCATATTGTTTTTCTGTTACCTCTAAATAGCGGACTTGGCCTTCTTCGGGCAAATGTACTAACAGTCTTTTGTGGTGTTTCTGCAACGAGTCGCGTCCTTTTACAATGCGTGAATAAACCGATAATTGCAGCATGTGATAACCGTCTTTCTGTAGAAATTTACGGAATTGGTTGGCTGCTTTTCTTTTGGCAGCGGTGGTTACAGGCAAGTCAAAGAAAACGATTAAGCGCATAAATTTGGCCTCACTCATAATCATGTACCTTTAAGCGCAGCATTTGTGGCAGTTTTAAAAGTTTGGGTTTGTTTTGGCTGATGGCCGTCTGAAAAGATTGTATGGTGCGGTCTATGGCAGCCAATAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTTCCTCTCTCATCTCGTAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //