Array 1 847139-847288 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVJM01000010.1 Bacillus pseudomycoides strain AFS062349 AFS062349_61_B10_Contig10_140312, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 847139 30 100.0 30 .............................. TAGCCAACCTGTTTGCATTGCTCCGTTGCT 847199 30 96.7 30 ......A....................... CAACCAGCCTGTTTGCATTGCTCCACTATT 847259 30 93.3 0 .........A.....G.............. | ========== ====== ====== ====== ============================== ============================== ================== 3 30 96.7 30 TTGCAGGTAGTACCAAGTTGTTCCTTCCTG # Left flank : TTTAACACACGAAGTTCTGGTCGATCTTTTACAAATCTATTTTTAGCACCTGTATTTTTAATTAAAGCATTCTGTACAGCATTTGCTAAAGTAAGTGCTTGTTTACTTTTTGGGTGTTCAGAATTATATAACGTTTCAATTCCTTCTGCTGCAGTCGCATCAGCTGAATTTACATGCACACTAACAAAAATATCTGCTTTGTTTTCATTTGAAATACGAACACGATCTCCTAATGGAATAAAGATATCTGTTGCTCGTGTCATCACAACATTTGAACCACTCTGAGCTAATAAACTCTTTAACTTCAAACCTACTTGCAGGGCAATCGTTTTTTCATATATATTTTCATATAATGTCCCCGAATCATATCCACCATGTCCTGGATCAACTATAATTGTTTTACCAAATATGATTGGATTGTCAATCCAAACACCATTTGTATCAAAATAGTATACTTTACCATTCTCATCTAACCAGCCTATTTTCATTGCCCCATTGCC # Right flank : GCAACCAGCCCATTTGCATTGCTCCACTTCCGTTGAAGTAGTACCATGCTCCATTAATTGACTGCCAACCTGTTTTCGCTGCTCCGCTGCTTTCTAAATAATATTTTTTATCCCCAAGCTGCAGCCAACCTGTTTTCATTACTCCATCGCTTTCGAAGTAATATTTTTTATCCCCAAGCTGCAACCAGCCCGTTTTCATTGCTCCATTGCTTTCTAAATAATATTTTTTATCTCCAAGCTGTAGCCAGCCTATTTTCATTGCTCCATTGCTTTCTAAATAATACCAAGTTGTTCCTTCCTGCAACCAGCCCGTTTTCATTGCTCCACTACTTTGCAGGTAATACCAGGTTGTCCCTTCCTGTAACCAGCCCGTTTTCATTGCTCCATTGCTTTGCAAGTAATACCAGGCTGTCCCTTCTTTCAACCAGCCTGTTTTCATTGCTCCATCTTGTTGCAAATAGTACCAAGTAGTCCCTTCTTGCAGCCAACCCGTTTTCTGT # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGCAGGTAGTACCAAGTTGTTCCTTCCTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 1010-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVJM01000127.1 Bacillus pseudomycoides strain AFS062349 AFS062349_61_B10_Contig127_140312, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1009 29 100.0 36 ............................. AACGATGTAAGCTGCGCTTCAGTTTGTGTTATAAGG 944 29 100.0 35 ............................. GCAGTCCCAGCAGGATACTGTGAGGTGGAAATACC 880 29 100.0 36 ............................. TTAGATATTGCATTGGTTTACGACCCAGAGAAAAAC 815 29 100.0 36 ............................. ATGGCAGCTAAAATCTCAGCAGCTATTGCTCGTAAG 750 29 100.0 36 ............................. CTAAATACTTTGTATACGTATACTCAAAAAGCCACT 685 29 100.0 36 ............................. GTAGCTTTACTAACAAGTGAAACTGATCTAAACTTA 620 29 100.0 37 ............................. AGCACTTACGATTCCATCCTTCTTCGCTTCTGTATAG 554 29 100.0 36 ............................. ACAAAATCTTTGGACAAATCAATTTTGTTTCCTTTT 489 29 100.0 36 ............................. TTAAAAATGTGATTACGTACTTCACAGTTTACAAAC 424 29 100.0 35 ............................. GCTTTAGAAATAGAAAAATTGGTTCAAGCAGGAAA 360 29 100.0 36 ............................. TAAGTTTTCTTCGTTCTCTGATTTCCTTCCACACTT 295 29 100.0 36 ............................. CTCTATTTGGAAGCACGGGCAATCGGTGCAGAGGAA 230 29 100.0 35 ............................. CAGCAACGATCCTTACAGGATGTAAAAAAAACTCG 166 29 100.0 37 ............................. ATAGCGGTAACCACTCCTAAGACAACTATTACAAAGT 100 29 96.6 35 ....................T........ GATTTATCTGTTGCTGTAACTGTTACTTGAATATC 36 29 82.8 0 .................G.TTC......A | CG,G [8,11] ========== ====== ====== ====== ============================= ===================================== ================== 16 29 98.7 36 GTTTTATAAGAACTATATGGAATGTAAAT # Left flank : TTTATTGGAGAAGATGCTTATAAACCGTTAAAGGCATGGTGGTAATATGTTTGTAATTGTCTCATATGATGTGGAAGTAAAAAGGGTTAGTAAAGTTCATAAAGTATTGAAAAAATATTTACAGTGGACACAAAATTCTGTATTTGAAGGAGAGATTACAGAAGGAAAGTTAAAAAAATGTATGCATGAAATTTCGGAGAAAATTAATCCTGCTTTTGATTCTGTCTATGTCTACAGAGTTGCTAATCCGAGGAATATTCGAAAAGATATCTATGGGTGTGAAAAAGATTTTGAAACGATGTTTTTATAAAGCTATTTTGCCGTAAAGCTTCTTTTGAGCTTTATTTCGCTAAGTGTTGATATATTTGATATGAAGAGAGTTTCTTAGAAGAATCTAAAGACACAACTATCACTTTACGGCAAAATGTTATAAAATAAATGTAAATAAAGTGTCAAAAACCCTTGGTGTTTAAGGCTTTTTGTTCGGTGAAAATATCAGG # Right flank : AACCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATAAGAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //