Array 1 708147-709122 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQPS01000012.1 Enterocloster citroniae strain MCC335 NODE_12_length_720050_cov_44.187496, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 708147 33 100.0 34 ................................. CTTGCGTATGACCGCTCTTGCTTTTTCAAGTTCC 708214 33 100.0 34 ................................. CATAGGAACGGCAATCGCAACTTATTTCGTGGTC 708281 33 100.0 35 ................................. ACGAATGATGAACTTAAGCTGCTGTGGTCTAATGT 708349 33 100.0 34 ................................. ACATTGACAATCACCAATATTAGTGATATACTAT 708416 33 100.0 33 ................................. TCAAAATTCGCTACAACAATCACGAATGGCAAC 708482 33 100.0 34 ................................. ATGTCTGAGGATCTGTATGCAAAGTTCTGGATAT 708549 33 100.0 33 ................................. TCTTAAATACTGTAAATCCTCTTTGGCTCTGGC 708615 33 100.0 34 ................................. ATACTCAAAATCGGCTTGCTGGCAGACAACCTCC 708682 33 100.0 34 ................................. ATCTCCATTGATAAAGGTGTCATTAAACAGCGCC 708749 33 100.0 35 ................................. TCTCAACAGGGCGCTATGGAAGAATATCTCCGCAT 708817 33 100.0 35 ................................. ATTATTAGCATGGGCAAAATAAGACCATGATTAAC 708885 33 100.0 34 ................................. ATCAATCCCGTTCATTCCCACTGCATCTGTGAAA 708952 33 100.0 35 ................................. CAGTTAATTTCAGAATGTTACCCAAATTATAAAGC 709020 33 93.9 35 ..................T...C.......... ATTAGAAATTAAAATCAGCATGCGGAATTCTGACC 709088 33 87.9 0 ............A...AA.........A..... | GT [709112] ========== ====== ====== ====== ================================= =================================== ================== 15 33 98.8 34 GTCAGCTTCCGCGAGGGGGCTGTGGATTGAAAT # Left flank : CTCACTCGTGAGCGGAAGCCCGACCATACAGGATGGAAAGCTGGCCGGGGCGGTGACCCATGTGTTTGTGCAGGATGCCAGCCGGGGGTATGGGATTTTGATTGAGAATATGTTGGAGCATTGAGGGTGAGGGAGGATAGAGTGGGCATATAGGTGCTGTGATCCTGCGTTCTTGGCTCTTATAAGCCTTTGTCCACTCTATCTTATGGAGTAAAAATTTTTGGTGTTTAGACGAAGTAGTGAGCGGATAGAAGAAGAGATGTAAGGGGAGCAAGATTTTGAACCATAATTTTGGTATACAAATACTTGATAATGTAAGTTACTATATTGGTGCGAATGCCAAGTGCACATGAAAAGCATAGGAGATTCGCACTTGGTTTTTAAGAAAAATTTGAGAAAAGAGAATAATTTAGATATCATGGGTTGTAAAATGATTAAGAGAGTTGTATGATTTGTATAGAATATGTCTTGTATAAAAAAGAAAATTAGACATATTTGCA # Right flank : TCCATTGTAATATTGATGTCGCTGCTCCCTAAACGGTCAGCCCCAGCATAGGTTAATTCAATCCGAATAAATTAAGTCATATAATATAAAAAATATTAAAACATCAGATGAAAGCACTATTCTGATAAACCCGACTATCCTGTTCTTCCAGCGTACCGAATAAGTGATCGACATGCAAAAGAAATCAAAGAAATCAAATCACCCCAATACAAAGACCACATAGCCTCCCTCCATTAATTATTCCAATACACCCATCTTCCCAAAATAACATCTCCAATTTTTCCCAAAAAACAAAAACATCACTTCTACAATAAAGAAAACCAAACACACTCCCATTCCAATAACCCAAAAGTAATCACACGTTCAAACATCATATGCCTCAATTATCCATCACACTAAAAAGCATTCAACGATCATATACGGATCCTTCACCTATGTGGCAATGGAACAAAAGAAATTTTTATTCAGAAGTGGCGCAGCCTGCCTCAGAATATCATATC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCTTCCGCGAGGGGGCTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCAGCTTCCGCGAGGGGGCTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 36999-37623 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQPS01000141.1 Enterocloster citroniae strain MCC335 NODE_190_length_100941_cov_42.734577, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 36999 32 100.0 35 ................................ CTCGGACATCAGCAAGTAGGCAGTTTCGCCCTCAG 37066 32 100.0 34 ................................ AAAGGTGACAGGCTATATAGACGAGGCTGCTAAA 37132 32 100.0 33 ................................ CCTATGTACTTGGCCCTGGCGGGGGCCTGTAAG 37197 32 100.0 33 ................................ TCTTCCTTCTGGGCTTTGCAACCTTCGCGATCA 37262 32 100.0 35 ................................ TATGTAGTACGTAGTAAGGGGGGCATTGGCATTAT 37329 32 100.0 34 ................................ CGTCAGGCCCGATCCGAAGCATCAAAGGAATACT 37395 32 96.9 35 .................A.............. CTCCTCTCTCCGGCTTGCCCCGGCCATTCATTAAG 37462 32 96.9 33 .................A.............. TATATAAAACGATAAAAACGATAATAATCGAAT 37527 32 100.0 33 ................................ TTCTTGACTTTACGCCCTTTTGGGCATATAATA A [37545] 37593 31 75.0 0 A.T.......-......A..A...G..A.T.. | ========== ====== ====== ====== ================================ =================================== ================== 10 32 96.9 34 GTCGTTCCCCTTGCGGGGACGTGGATTGAAAT # Left flank : TGCATATCCGCCATTTTTGTGGAAGTGAGGTCAGAGTTTGCTGGTATTGATTACATATGATGTGAATACAGAGACAGCAGGAGGAAAAGCGAGACTTAGAAAGGTTGCCAAGCAATGCGTTAACTACGGGCGGCGAGTTCAGAATTCGGTATTTGAGTGTATTATGGATAATACGCAGTGTCTGCATCTGAAGTCAATATTGACAGAAATTATAGATGAAGAGATCGACAGCCTGCGGTTCTATTATTTGGGAAATAAGTATAAAACAAAAGTAGAGCATATGGGGGTTGATAAGGGGATTGCGGCAGATGAGATATTGTTTTTGTAGTGCGAATGTGAAGCATACATGAAAAGTACGGGGGATTCGCACCGGAAAAAGTACACAAAAGGTGCTTGGTTTGGGAGGGAGAGGCGATGATTTTGCTGTGTGGTATTCAAAGAAATGTATAGATGATATAAAAGTGTGATTGTTTTGTGTTATGATATTGGATATATTTGCT # Right flank : TTGTAATATGACATCTATAAAAAGGTATATGGAAGATATTGATAGAGAAAGATATTAATAAAGAAAGATATAAATAAAGAAGTATCTTTGCAAAGGGATACCTCAAAAAGCGGGGAGTACAATATTTTCGGCCTAAGAATATCCTTGACAGATTGGAGACAGCAGTATTCGTCTGTTTGAAGTCATCTAAGATGATAAAATATGCAGCGATTATGGTATTTGGAGGAAAAATGGAACAGTTATCTATATTTGAGTGTATAAATGGAACAGAAGAAAATAGAACCCTTTCCACGGATGAATTGGCTGCAATTCATCCACGGATGGTTTCGTTATTTAGCGGTTGCGGCGGATTGGATTGGGGATTTAAAGAGGCTGGATATGATATTGTTTATGCAAATGATTTTGATAAGGATGCACAGAGAGTGTATGAGGCAAATTTTGGCGAGATGGACGAAAGAAGTATCCTCGATGTACCGGCAGAGGAAGTGCCGGACTGCGAT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCCTTGCGGGGACGTGGATTGAAAT # Alternate repeat : GTCGTTCCCCTTGCGGGAACGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : NA // Array 1 1424-2595 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQPS01000156.1 Enterocloster citroniae strain MCC335 NODE_220_length_115875_cov_39.587376, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1424 33 100.0 34 ................................. ATCATCACCTCATTCCATTTTTCCTCACATAGCT 1491 33 100.0 34 ................................. ACTTTGAAGCATAGGATACCCCTCAAGGTCACTG 1558 33 100.0 34 ................................. CATACAACTGTCAGGACTTTGTAAATATACACTC 1625 33 100.0 36 ................................. TTTGAGAGAATCAAGGAACGCCTGGGAGAGGATGAT 1694 33 100.0 33 ................................. ATGATAAGCATCTGGTCACGCGTATCAGTGAAG 1760 33 100.0 34 ................................. AATACACTGTAGTGGCGACCCCGAAGATTGTAAA 1827 33 100.0 35 ................................. TGGAAAGCCAGCCATTAATAAACCGGTTGACGCCT 1895 33 100.0 33 ................................. ATGGTTAAGAATTCGTCATAGTTAGAGCCTGTG 1961 33 100.0 36 ................................. CCCAATTGACAAATAGTAATTTCCCTTAATCCATTC 2030 33 100.0 34 ................................. GGAAATAATGATTATTGTCCGCTCATAAAAGGTG 2097 33 100.0 33 ................................. ATATAGTCCATGCCATCACTCCCCAGTGACCGC 2163 33 100.0 35 ................................. AACGAGTATCAAACACGCTACAGACGTGAAAAGTG 2231 33 100.0 34 ................................. CCTATACAGATTCAAAAGGGAAGCAGACGACTTG 2298 33 100.0 33 ................................. CTGCTTTTTAGAATAATTTAAGCAGTATGTTAA 2364 33 100.0 33 ................................. CATGGAAAAGAAGACTGCCGACACGAAAGCGGC 2430 33 100.0 34 ................................. CTTATATTATGCACAGTCCACACCTGATACAGTG 2497 33 100.0 34 ................................. TCTGCGCATGGCGGTTATAAGTCCACCCATGCCT 2564 32 81.8 0 ..............A.........C.-..T.GC | ========== ====== ====== ====== ================================= ==================================== ================== 18 33 99.0 34 GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT # Left flank : GTCCATATTCTGTAGGGAAGGTTAATGCTTATATCAATTCCTTGAAAGACTTGTTTTCTGAAACTTTAATTTGGACCTTATCTATCATTACGGAAACGAGAAGAACATTAAAACATAAAGATAGTGAAGAAATCAAAATTGTGGAAAACGATAAGCTGGAGAAATATCATTTAAGTGATTTTGATATCAGAAATTTAAAAAAATCTCTTTGCTCTCCTTAGAGGTTCAATTGTTAAGTGTATGTTTACATATTATGGGATTGGAATAAATATTGCTTTGGGGTACAAAACTGAAAGTTTGGATTAAATATTATCAGAAAAAGGGAATACAAGTATTATGGTGCGAATCCCAAGCAAACATAAAATGTCTAGGAGATTCGCATCAAAATAAAGCACATAATATTTGATTTCGAGAGAAGATGTAGTATAATATGAAAAGAGATTTGTGCATTGTGTATGAGGGTAAGTTGTATTTAATAGTAAATATCATGCATAATTGCA # Right flank : CAGACTTGAACTTGGTAATTTTTCAATTACGATCATACCAAAGGAAAAATGTCGGGGTGTATGAATTAATTTCATATACCTCGACATTTATTATAGAATCATCTTATCAATTTGAAAGTCACAAAAATCGAAATCCCCTCAGAACGCTCCATCACACTTCCTGTCTAAACATCACCCGCGAAGCGTGGGCTCCGCCCCGGTGGATCCTGTTGTGGGCTGTTTTGATCGTCACACTGTTAAAGCCATCTCTGGTGTTCCGGTTTGGAAAGATAAAATTTTTTGCACTGGAGGTTATTGTGACTCTCAGGCAATGACCTTTGCAAAAGGTGTGGGACAGTTTGGTAGTACGGATTTTAACAGGGTAGATCTGTCCCGGTTCCATAAAGTCCGGGTGTTCAAACTGGTTACGGTACCGTACGCTGAGGACACCGTCTGCCAGTTTCATGGAACGTCCCTCCCTATCCATATCCGTGATGCGCACGACCAGATCCGTATCCTCA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: F [matched GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //